RNA–Protein interactions for RNA: ENST00000311351.8

LSM1-201, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM1, Length 1,147 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-201ENST00000311351 RGS13O14921 159 aa11.4□□□□□ -0.58
LSM1-201ENST00000311351 MBP02144 154 aa11.4□□□□□ -0.58
LSM1-201ENST00000311351 SERF2P84101 59 aa11.4□□□□□ -0.58
LSM1-201ENST00000311351 OR5I1Q13606 314 aa11.4□□□□□ -0.58
LSM1-201ENST00000311351 ANXA2RQ3ZCQ2 193 aa11.4□□□□□ -0.58
LSM1-201ENST00000311351 GNPNAT1Q96EK6 184 aaPredicted RBP11.4□□□□□ -0.58
LSM1-201ENST00000311351 ATG101Q9BSB4 218 aa11.4□□□□□ -0.58
LSM1-201ENST00000311351 KLF12Q9Y4X4 402 aa11.4□□□□□ -0.58
LSM1-201ENST00000311351 IGHV1OR15-1A0A075B7D0 117 aa11.39□□□□□ -0.59
LSM1-201ENST00000311351 TRAV26-1A0A087WT03 109 aa11.39□□□□□ -0.59
LSM1-201ENST00000311351 TRGV1A0A0A0MS02 117 aa11.39□□□□□ -0.59
LSM1-201ENST00000311351 A0A0J9YY99 117 aa11.39□□□□□ -0.59
LSM1-201ENST00000311351 PGPA6NDG6 321 aa11.39□□□□□ -0.59
LSM1-201ENST00000311351 G3V3Q6 166 aa11.39□□□□□ -0.59
LSM1-201ENST00000311351 TCL1AP56279 114 aa11.39□□□□□ -0.59
LSM1-201ENST00000311351 GNG5P63218 68 aa11.39□□□□□ -0.59
LSM1-201ENST00000311351 CMTM2Q8TAZ6 248 aa11.39□□□□□ -0.59
LSM1-201ENST00000311351 RXFP4Q8TDU9 374 aa11.39□□□□□ -0.59
LSM1-201ENST00000311351 MUC4Q99102 2169 aa11.39□□□□□ -0.59
LSM1-201ENST00000311351 TRBV7-9A0A0J9YWB2 115 aa11.38□□□□□ -0.59
LSM1-201ENST00000311351 ARPC5O15511 151 aa11.38□□□□□ -0.59
LSM1-201ENST00000311351 LGALS9BQ3B8N2 356 aa11.38□□□□□ -0.59
LSM1-201ENST00000311351 MUC21Q5SSG8 566 aa11.38□□□□□ -0.59
LSM1-201ENST00000311351 RPL7L1Q6DKI1 246 aaKnown RBP11.38□□□□□ -0.59
LSM1-201ENST00000311351 Q6ZR54 194 aa11.38□□□□□ -0.59
LSM1-201ENST00000311351 GOLT1AQ6ZVE7 132 aa11.38□□□□□ -0.59
LSM1-201ENST00000311351 RTL8CO15255 209 aa11.37□□□□□ -0.59
LSM1-201ENST00000311351 STAG3L2P0CL84 134 aa11.37□□□□□ -0.59
LSM1-201ENST00000311351 STAG3L3P0CL85 134 aa11.37□□□□□ -0.59
LSM1-201ENST00000311351 FAM74A1Q5RGS3 127 aa11.37□□□□□ -0.59
LSM1-201ENST00000311351 IBA57Q5T440 356 aaKnown RBP11.37□□□□□ -0.59
LSM1-201ENST00000311351 SSX7Q7RTT5 188 aa11.37□□□□□ -0.59
LSM1-201ENST00000311351 RAB24Q969Q5 203 aa11.37□□□□□ -0.59
LSM1-201ENST00000311351 ARPC5LQ9BPX5 153 aa11.37□□□□□ -0.59
LSM1-201ENST00000311351 MRPL16Q9NX20 251 aaKnown RBP11.37□□□□□ -0.59
LSM1-201ENST00000311351 TRGV2A0A075B6R0 118 aa11.36□□□□□ -0.59
LSM1-201ENST00000311351 TRAV8-1A0A0A6YYK1 113 aa11.36□□□□□ -0.59
LSM1-201ENST00000311351 SPINK4O60575 86 aa11.36□□□□□ -0.59
LSM1-201ENST00000311351 GCHFRP30047 84 aa11.36□□□□□ -0.59
LSM1-201ENST00000311351 ZNF345Q14585 488 aa11.36□□□□□ -0.59
LSM1-201ENST00000311351 LENEPQ9Y5L5 61 aa11.36□□□□□ -0.59
LSM1-201ENST00000311351 HMSDA8MTL9 139 aa11.35□□□□□ -0.59
LSM1-201ENST00000311351 F6UZH7 168 aa11.35□□□□□ -0.59
LSM1-201ENST00000311351 SMLR1H3BR10 107 aa11.35□□□□□ -0.59
LSM1-201ENST00000311351 ZNF415Q09FC8 603 aa11.35□□□□□ -0.59
LSM1-201ENST00000311351 Q6AWC8 147 aa11.35□□□□□ -0.59
LSM1-201ENST00000311351 ZNRF2Q8NHG8 242 aa11.35□□□□□ -0.59
LSM1-201ENST00000311351 TMED6Q8WW62 240 aa11.35□□□□□ -0.59
LSM1-201ENST00000311351 LINC00588Q9Y4M8 146 aa11.35□□□□□ -0.59
LSM1-201ENST00000311351 IGHV3-53P01767 116 aa11.34□□□□□ -0.59
LSM1-201ENST00000311351 FAM3BP58499 235 aaPredicted RBP11.34□□□□□ -0.59
LSM1-201ENST00000311351 LINC00336Q6ZUF6 198 aa11.34□□□□□ -0.59
LSM1-201ENST00000311351 TVP23CQ96ET8 276 aa11.34□□□□□ -0.59
LSM1-201ENST00000311351 SGK494Q96LW2 274 aa11.34□□□□□ -0.59
LSM1-201ENST00000311351 C18orf15Q96N68 181 aa11.34□□□□□ -0.59
LSM1-201ENST00000311351 NAGKQ9UJ70 344 aa11.34□□□□□ -0.59
LSM1-201ENST00000311351 PKHD1P08F94 4074 aa11.33□□□□□ -0.6
LSM1-201ENST00000311351 A0A0D9SG52 128 aa11.33□□□□□ -0.6
LSM1-201ENST00000311351 GGTLC3B5MD39 225 aa11.33□□□□□ -0.6
LSM1-201ENST00000311351 CCL18P55774 89 aa11.33□□□□□ -0.6
LSM1-201ENST00000311351 ZNF726P1Q15940 193 aa11.33□□□□□ -0.6
LSM1-201ENST00000311351 TMEM183BQ1AE95 376 aa11.33□□□□□ -0.6
LSM1-201ENST00000311351 IQCF2Q8IXL9 164 aa11.33□□□□□ -0.6
LSM1-201ENST00000311351 TMEM183AQ8IXX5 376 aa11.33□□□□□ -0.6
LSM1-201ENST00000311351 SUN5Q8TC36 379 aa11.33□□□□□ -0.6
LSM1-201ENST00000311351 VSIG2Q96IQ7 327 aa11.33□□□□□ -0.6
LSM1-201ENST00000311351 ST6GAL2Q96JF0 529 aa11.33□□□□□ -0.6
LSM1-201ENST00000311351 ACTR3CQ9C0K3 210 aaPredicted RBP11.33□□□□□ -0.6
LSM1-201ENST00000311351 MDFICQ9P1T7 246 aa11.33□□□□□ -0.6
LSM1-201ENST00000311351 A0A1B0GVY2 172 aa11.32□□□□□ -0.6
LSM1-201ENST00000311351 PRSS29PA6NIE9 313 aa11.32□□□□□ -0.6
LSM1-201ENST00000311351 KCNRGQ8N5I3 272 aa11.32□□□□□ -0.6
LSM1-201ENST00000311351 ARL6IP6Q8N6S5 226 aa11.32□□□□□ -0.6
LSM1-201ENST00000311351 C5orf17Q8NAS9 161 aa11.32□□□□□ -0.6
LSM1-201ENST00000311351 TREM1Q9NP99 234 aa11.32□□□□□ -0.6
LSM1-201ENST00000311351 KANTRA0A1W2PQU2 76 aa11.31□□□□□ -0.6
LSM1-201ENST00000311351 CXorf1O96002 111 aa11.31□□□□□ -0.6
LSM1-201ENST00000311351 TCRAP04437 139 aa11.31□□□□□ -0.6
LSM1-201ENST00000311351 EIF5AP63241 154 aaKnown RBP11.31□□□□□ -0.6
LSM1-201ENST00000311351 AKR1C8PQ5T2L2 129 aa11.31□□□□□ -0.6
LSM1-201ENST00000311351 FAM159AQ6UWV7 190 aa11.31□□□□□ -0.6
LSM1-201ENST00000311351 Q6ZNX1 250 aa11.31□□□□□ -0.6
LSM1-201ENST00000311351 KIAA1109Q2LD37 5005 aa11.31□□□□□ -0.6
LSM1-201ENST00000311351 HERC2O95714 4834 aa11.3□□□□□ -0.6
LSM1-201ENST00000311351 PKD1P98161 4303 aa11.3□□□□□ -0.6
LSM1-201ENST00000311351 TRGV11A0A075B6L2 103 aa11.3□□□□□ -0.6
LSM1-201ENST00000311351 A0A096LPF7 62 aa11.3□□□□□ -0.6
LSM1-201ENST00000311351 NBDYA0A0U1RRE5 68 aa11.3□□□□□ -0.6
LSM1-201ENST00000311351 H3BNG1 76 aa11.3□□□□□ -0.6
LSM1-201ENST00000311351 CYTL1Q9NRR1 136 aa11.3□□□□□ -0.6
LSM1-201ENST00000311351 TMEM167BQ9NRX6 74 aa11.3□□□□□ -0.6
LSM1-201ENST00000311351 TRAV21A0A0B4J279 112 aa11.29□□□□□ -0.6
LSM1-201ENST00000311351 CTXND1A0A1B0GTU2 59 aa11.29□□□□□ -0.6
LSM1-201ENST00000311351 FGF8P55075 233 aaPredicted RBP11.29□□□□□ -0.6
LSM1-201ENST00000311351 SUMO1P63165 101 aaKnown RBP11.29□□□□□ -0.6
LSM1-201ENST00000311351 ESRGQ1W209 222 aa11.29□□□□□ -0.6
LSM1-201ENST00000311351 C1orf134Q5TEV5 83 aa11.29□□□□□ -0.6
LSM1-201ENST00000311351 TCTE3Q8IZS6 198 aa11.29□□□□□ -0.6
LSM1-201ENST00000311351 C8orf49Q96NF6 230 aa11.29□□□□□ -0.6
LSM1-201ENST00000311351 DYNC1H1Q14204 4646 aaKnown RBP11.29□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 72.5 ms