RNA–Protein interactions for RNA: ENST00000304636.7

COL3A1-201, Transcript of collagen type III alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL3A1, Length 5,543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-201ENST00000304636 NDUFA12Q9UI09 145 aa10.17□□□□□ -0.78
COL3A1-201ENST00000304636 EGR2P11161 476 aaPredicted RBP10.17□□□□□ -0.78
COL3A1-201ENST00000304636 C17orf77Q96MU5 243 aa10.17□□□□□ -0.78
COL3A1-201ENST00000304636 NDUFA4O00483 81 aa10.17□□□□□ -0.78
COL3A1-201ENST00000304636 SOCS3O14543 225 aa10.17□□□□□ -0.78
COL3A1-201ENST00000304636 AKAP6Q13023 2319 aa10.16□□□□□ -0.78
COL3A1-201ENST00000304636 PLXNB3Q9ULL4 1909 aa10.16□□□□□ -0.78
COL3A1-201ENST00000304636 IGHV1OR15-1A0A075B7D0 117 aa10.16□□□□□ -0.78
COL3A1-201ENST00000304636 SRSF2Q01130 221 aaKnown RBP10.16□□□□□ -0.78
COL3A1-201ENST00000304636 MORN5Q5VZ52 161 aa10.16□□□□□ -0.78
COL3A1-201ENST00000304636 LINC00173Q6ZV60 143 aa10.16□□□□□ -0.78
COL3A1-201ENST00000304636 KAAG1Q9UBP8 84 aa10.16□□□□□ -0.78
COL3A1-201ENST00000304636 TRBV25-1A0A075B6N4 114 aa10.16□□□□□ -0.78
COL3A1-201ENST00000304636 ZNF493Q6ZR52 646 aa10.16□□□□□ -0.78
COL3A1-201ENST00000304636 RBAKDNA6NC62 111 aa10.16□□□□□ -0.78
COL3A1-201ENST00000304636 VWC2LB2RUY7 222 aa10.16□□□□□ -0.78
COL3A1-201ENST00000304636 GP9P14770 177 aa10.16□□□□□ -0.78
COL3A1-201ENST00000304636 IGLL5B9A064 214 aa10.16□□□□□ -0.78
COL3A1-201ENST00000304636 G3V318 75 aa10.16□□□□□ -0.78
COL3A1-201ENST00000304636 TEX48A0A1B0GUV7 120 aa10.15□□□□□ -0.78
COL3A1-201ENST00000304636 TRIOBPQ9H2D6 2365 aa10.15□□□□□ -0.78
COL3A1-201ENST00000304636 TICRRQ7Z2Z1 1910 aa10.15□□□□□ -0.78
COL3A1-201ENST00000304636 ANKRD39Q53RE8 183 aa10.15□□□□□ -0.78
COL3A1-201ENST00000304636 YLPM1P49750 1951 aaKnown RBP10.15□□□□□ -0.78
COL3A1-201ENST00000304636 PRSS29PA6NIE9 313 aa10.15□□□□□ -0.78
COL3A1-201ENST00000304636 TAX1BP3O14907 124 aa10.15□□□□□ -0.78
COL3A1-201ENST00000304636 BPESC1Q9GZL8 116 aa10.15□□□□□ -0.78
COL3A1-201ENST00000304636 CARD19Q96LW7 228 aa10.15□□□□□ -0.79
COL3A1-201ENST00000304636 MSRB2Q9Y3D2 182 aa10.15□□□□□ -0.79
COL3A1-201ENST00000304636 FRMPD3Q5JV73 1810 aa10.15□□□□□ -0.79
COL3A1-201ENST00000304636 DOCK9Q9BZ29 2069 aa10.14□□□□□ -0.79
COL3A1-201ENST00000304636 SYNJ2BPP57105 145 aa10.14□□□□□ -0.79
COL3A1-201ENST00000304636 SPINK13Q1W4C9 94 aa10.14□□□□□ -0.79
COL3A1-201ENST00000304636 GAGE12JA6NER3 117 aa10.14□□□□□ -0.79
COL3A1-201ENST00000304636 GAGE7O76087 117 aa10.14□□□□□ -0.79
COL3A1-201ENST00000304636 GAGE12FP0CL80 117 aa10.14□□□□□ -0.79
COL3A1-201ENST00000304636 GAGE12GP0CL81 117 aa10.14□□□□□ -0.79
COL3A1-201ENST00000304636 GAGE12IP0CL82 117 aa10.14□□□□□ -0.79
COL3A1-201ENST00000304636 DEFB131AP59861 70 aa10.14□□□□□ -0.79
COL3A1-201ENST00000304636 GAGE4Q13068 117 aa10.14□□□□□ -0.79
COL3A1-201ENST00000304636 SS18Q15532 418 aa10.14□□□□□ -0.79
COL3A1-201ENST00000304636 FOXI2Q6ZQN5 318 aa10.14□□□□□ -0.79
COL3A1-201ENST00000304636 MRPL53Q96EL3 112 aaKnown RBP10.14□□□□□ -0.79
COL3A1-201ENST00000304636 KLK9Q9UKQ9 250 aa10.14□□□□□ -0.79
COL3A1-201ENST00000304636 SAP30O75446 220 aa10.14□□□□□ -0.79
COL3A1-201ENST00000304636 CFC1BP0CG36 223 aa10.14□□□□□ -0.79
COL3A1-201ENST00000304636 CFC1P0CG37 223 aa10.14□□□□□ -0.79
COL3A1-201ENST00000304636 DYNAPQ8N1N2 210 aa10.14□□□□□ -0.79
COL3A1-201ENST00000304636 KNCNA6PVL3 124 aa10.13□□□□□ -0.79
COL3A1-201ENST00000304636 PATE2Q6UY27 113 aa10.13□□□□□ -0.79
COL3A1-201ENST00000304636 IGFL3Q6UXB1 125 aa10.13□□□□□ -0.79
COL3A1-201ENST00000304636 NTN5Q8WTR8 489 aaPredicted RBP10.13□□□□□ -0.79
COL3A1-201ENST00000304636 TANC1Q9C0D5 1861 aa10.13□□□□□ -0.79
COL3A1-201ENST00000304636 CFHR4Q92496 578 aa10.13□□□□□ -0.79
COL3A1-201ENST00000304636 UBE2E2Q96LR5 201 aa10.13□□□□□ -0.79
COL3A1-201ENST00000304636 IGLV2-14P01704 120 aa10.13□□□□□ -0.79
COL3A1-201ENST00000304636 FAM167A-AS1Q96KT0 104 aa10.13□□□□□ -0.79
COL3A1-201ENST00000304636 LENEPQ9Y5L5 61 aa10.13□□□□□ -0.79
COL3A1-201ENST00000304636 HIGD1BQ9P298 99 aa10.12□□□□□ -0.79
COL3A1-201ENST00000304636 LHBP01229 141 aa10.12□□□□□ -0.79
COL3A1-201ENST00000304636 IGHG4P01861 327 aa10.12□□□□□ -0.79
COL3A1-201ENST00000304636 AGPAT4-IT1Q9H0P7 198 aa10.12□□□□□ -0.79
COL3A1-201ENST00000304636 DOCK8Q8NF50 2099 aa10.12□□□□□ -0.79
COL3A1-201ENST00000304636 DENND4CQ5VZ89 1909 aa10.12□□□□□ -0.79
COL3A1-201ENST00000304636 C11orf44Q8N8P7 122 aa10.12□□□□□ -0.79
COL3A1-201ENST00000304636 GTSF1Q8WW33 167 aa10.12□□□□□ -0.79
COL3A1-201ENST00000304636 DOPEY2Q9Y3R5 2298 aa10.12□□□□□ -0.79
COL3A1-201ENST00000304636 SH2D6Q7Z4S9 175 aa10.11□□□□□ -0.79
COL3A1-201ENST00000304636 C15orf53Q8NAA6 179 aa10.11□□□□□ -0.79
COL3A1-201ENST00000304636 GAGE5Q13069 117 aa10.11□□□□□ -0.79
COL3A1-201ENST00000304636 GAGE6Q13070 117 aa10.11□□□□□ -0.79
COL3A1-201ENST00000304636 MYO7BQ6PIF6 2116 aa10.11□□□□□ -0.79
COL3A1-201ENST00000304636 COL4A3Q01955 1670 aa10.11□□□□□ -0.79
COL3A1-201ENST00000304636 IGHV1-69DA0A0B4J2H0 117 aa10.11□□□□□ -0.79
COL3A1-201ENST00000304636 RUSC1-AS1Q66K80 236 aa10.11□□□□□ -0.79
COL3A1-201ENST00000304636 INS-IGF2F8WCM5 200 aa10.11□□□□□ -0.79
COL3A1-201ENST00000304636 RHOHQ15669 191 aa10.11□□□□□ -0.79
COL3A1-201ENST00000304636 IGHV1-69P01742 117 aa10.1□□□□□ -0.79
COL3A1-201ENST00000304636 ANKRD29Q8N6D5 301 aa10.1□□□□□ -0.79
COL3A1-201ENST00000304636 CDK2AP2O75956 126 aa10.1□□□□□ -0.79
COL3A1-201ENST00000304636 SPANXCQ9NY87 97 aa10.1□□□□□ -0.79
COL3A1-201ENST00000304636 GVINP1Q7Z2Y8 2422 aa10.1□□□□□ -0.79
COL3A1-201ENST00000304636 TRAV13-2A0A0B4J235 113 aa10.1□□□□□ -0.79
COL3A1-201ENST00000304636 I3L2K1 104 aa10.1□□□□□ -0.79
COL3A1-201ENST00000304636 GATA1P15976 413 aaPredicted RBP10.09□□□□□ -0.79
COL3A1-201ENST00000304636 HERVK_113P63121 156 aa10.09□□□□□ -0.79
COL3A1-201ENST00000304636 KLHL30-AS1Q8NEE0 82 aa10.09□□□□□ -0.79
COL3A1-201ENST00000304636 ZNF407Q9C0G0 2248 aa10.09□□□□□ -0.79
COL3A1-201ENST00000304636 DENND4AQ7Z401 1863 aa10.09□□□□□ -0.79
COL3A1-201ENST00000304636 TRACP01848 142 aa10.09□□□□□ -0.79
COL3A1-201ENST00000304636 FAM215AQ9Y5M1 114 aa10.09□□□□□ -0.79
COL3A1-201ENST00000304636 C22orf46C9J442 243 aa10.09□□□□□ -0.79
COL3A1-201ENST00000304636 RPL35AP18077 110 aaKnown RBP10.09□□□□□ -0.79
COL3A1-201ENST00000304636 UBL5Q9BZL1 73 aa10.09□□□□□ -0.79
COL3A1-201ENST00000304636 TRAV12-2A0A075B6T6 113 aa10.08□□□□□ -0.8
COL3A1-201ENST00000304636 FOXE3Q13461 319 aa10.08□□□□□ -0.8
COL3A1-201ENST00000304636 LY6DQ14210 128 aa10.08□□□□□ -0.8
COL3A1-201ENST00000304636 MRAPQ8TCY5 172 aa10.08□□□□□ -0.8
COL3A1-201ENST00000304636 KMT2EQ8IZD2 1858 aa10.08□□□□□ -0.8
COL3A1-201ENST00000304636 SHANK1Q9Y566 2161 aa10.08□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms