RNA–Protein interactions for RNA: ENST00000271628.8

SF3B4-201, Transcript of splicing factor 3b subunit 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B4, Length 2,085 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B4-201ENST00000271628 FOSL1P15407 271 aa11.7□□□□□ -0.54
SF3B4-201ENST00000271628 HLA-DMBP28068 263 aa11.7□□□□□ -0.54
SF3B4-201ENST00000271628 HNRNPA3P51991 378 aaKnown RBP11.7□□□□□ -0.54
SF3B4-201ENST00000271628 URB1-AS1Q96HZ7 61 aa11.7□□□□□ -0.54
SF3B4-201ENST00000271628 TMEM70Q9BUB7 260 aa11.7□□□□□ -0.54
SF3B4-201ENST00000271628 DAZ1Q9NQZ3 744 aaKnown RBP11.7□□□□□ -0.54
SF3B4-201ENST00000271628 LOC102724200A0A096LPH7 203 aaPredicted RBP11.69□□□□□ -0.54
SF3B4-201ENST00000271628 BATFQ16520 125 aa11.69□□□□□ -0.54
SF3B4-201ENST00000271628 ITPR3Q14573 2671 aa11.69□□□□□ -0.54
SF3B4-201ENST00000271628 OR5AL1P0C617 328 aa11.69□□□□□ -0.54
SF3B4-201ENST00000271628 LINC00614P0C842 121 aa11.69□□□□□ -0.54
SF3B4-201ENST00000271628 CRIP1P50238 77 aa11.69□□□□□ -0.54
SF3B4-201ENST00000271628 Q8N2B8 174 aa11.69□□□□□ -0.54
SF3B4-201ENST00000271628 C16orf92Q96LL3 132 aa11.69□□□□□ -0.54
SF3B4-201ENST00000271628 LAMTOR2Q9Y2Q5 125 aa11.69□□□□□ -0.54
SF3B4-201ENST00000271628 MRPS16Q9Y3D3 137 aaKnown RBP11.69□□□□□ -0.54
SF3B4-201ENST00000271628 IGHV7-4-1A0A0J9YVY3 117 aa11.68□□□□□ -0.54
SF3B4-201ENST00000271628 BMI1P35226 326 aa11.68□□□□□ -0.54
SF3B4-201ENST00000271628 C8orf49Q96NF6 230 aa11.68□□□□□ -0.54
SF3B4-201ENST00000271628 VGLL1Q99990 258 aa11.68□□□□□ -0.54
SF3B4-201ENST00000271628 TRAV8-2A0A0B4J237 113 aa11.67□□□□□ -0.54
SF3B4-201ENST00000271628 A0A1B0GW15 77 aa11.67□□□□□ -0.54
SF3B4-201ENST00000271628 ATOH7Q8N100 152 aa11.67□□□□□ -0.54
SF3B4-201ENST00000271628 RNF182Q8N6D2 247 aa11.67□□□□□ -0.54
SF3B4-201ENST00000271628 UBE2E2Q96LR5 201 aa11.67□□□□□ -0.54
SF3B4-201ENST00000271628 UFC1Q9Y3C8 167 aa11.67□□□□□ -0.54
SF3B4-201ENST00000271628 A0A1B0GUT8 65 aa11.67□□□□□ -0.54
SF3B4-201ENST00000271628 RIGQ13278 110 aa11.67□□□□□ -0.54
SF3B4-201ENST00000271628 Q6AWC8 147 aa11.67□□□□□ -0.54
SF3B4-201ENST00000271628 C10orf99Q6UWK7 81 aa11.67□□□□□ -0.54
SF3B4-201ENST00000271628 RNF152Q8N8N0 203 aa11.67□□□□□ -0.54
SF3B4-201ENST00000271628 GATD1Q8NB37 220 aa11.67□□□□□ -0.54
SF3B4-201ENST00000271628 MYOZ3Q8TDC0 251 aa11.67□□□□□ -0.54
SF3B4-201ENST00000271628 IGHV1-24A0A0C4DH33 117 aa11.66□□□□□ -0.54
SF3B4-201ENST00000271628 CD5LO43866 347 aa11.66□□□□□ -0.54
SF3B4-201ENST00000271628 LEPROTL1O95214 131 aa11.66□□□□□ -0.54
SF3B4-201ENST00000271628 PRB4P10163 310 aaPredicted RBP11.66□□□□□ -0.54
SF3B4-201ENST00000271628 TSPOP30536 169 aa11.66□□□□□ -0.54
SF3B4-201ENST00000271628 IL17RELQ6ZVW7 336 aa11.66□□□□□ -0.54
SF3B4-201ENST00000271628 ASCL2Q99929 193 aa11.66□□□□□ -0.54
SF3B4-201ENST00000271628 RHPN1-AS1Q9BWJ2 59 aa11.66□□□□□ -0.54
SF3B4-201ENST00000271628 SMPXQ9UHP9 88 aa11.66□□□□□ -0.54
SF3B4-201ENST00000271628 GOLT1BQ9Y3E0 138 aa11.66□□□□□ -0.54
SF3B4-201ENST00000271628 TM4SF20Q53R12 229 aa11.66□□□□□ -0.54
SF3B4-201ENST00000271628 TMEM78Q5T7P6 136 aa11.66□□□□□ -0.54
SF3B4-201ENST00000271628 Q71RC1 249 aaPredicted RBP11.66□□□□□ -0.54
SF3B4-201ENST00000271628 PRAC2D3DTV9 90 aa11.65□□□□□ -0.54
SF3B4-201ENST00000271628 LGALS1P09382 135 aaKnown RBP11.65□□□□□ -0.54
SF3B4-201ENST00000271628 MAJINQ3KP22 176 aa11.65□□□□□ -0.54
SF3B4-201ENST00000271628 PPP1R14DQ9NXH3 145 aa11.65□□□□□ -0.54
SF3B4-201ENST00000271628 TMEM189A5PLL7 270 aa11.64□□□□□ -0.55
SF3B4-201ENST00000271628 SYS1-DBNDD2H3BUS1 97 aa11.64□□□□□ -0.55
SF3B4-201ENST00000271628 IGLL1P15814 213 aa11.64□□□□□ -0.55
SF3B4-201ENST00000271628 RPL11P62913 178 aaKnown RBP11.64□□□□□ -0.55
SF3B4-201ENST00000271628 Q8TAT8 98 aa11.64□□□□□ -0.55
SF3B4-201ENST00000271628 DUX5Q96PT3 197 aa11.64□□□□□ -0.55
SF3B4-201ENST00000271628 FABP5P3A8MUU1 101 aa11.64□□□□□ -0.55
SF3B4-201ENST00000271628 SH2D1AO60880 128 aa11.64□□□□□ -0.55
SF3B4-201ENST00000271628 RPS20P60866 119 aaKnown RBP11.64□□□□□ -0.55
SF3B4-201ENST00000271628 SRSF2Q01130 221 aaKnown RBP11.64□□□□□ -0.55
SF3B4-201ENST00000271628 ERCC8Q13216 396 aa11.64□□□□□ -0.55
SF3B4-201ENST00000271628 SAMD13Q5VXD3 122 aa11.64□□□□□ -0.55
SF3B4-201ENST00000271628 C9orf47Q6ZRZ4 202 aa11.64□□□□□ -0.55
SF3B4-201ENST00000271628 OR4C46A6NHA9 309 aa11.63□□□□□ -0.55
SF3B4-201ENST00000271628 ZNF138P52744 262 aa11.63□□□□□ -0.55
SF3B4-201ENST00000271628 AGPAT4-IT1Q9H0P7 198 aa11.63□□□□□ -0.55
SF3B4-201ENST00000271628 ST20Q9HBF5 79 aa11.63□□□□□ -0.55
SF3B4-201ENST00000271628 ITPR2Q14571 2701 aa11.63□□□□□ -0.55
SF3B4-201ENST00000271628 M0QZ24 198 aa11.63□□□□□ -0.55
SF3B4-201ENST00000271628 SOCS3O14543 225 aa11.63□□□□□ -0.55
SF3B4-201ENST00000271628 SCGB2A2Q13296 93 aa11.63□□□□□ -0.55
SF3B4-201ENST00000271628 STPG4Q8N801 248 aa11.63□□□□□ -0.55
SF3B4-201ENST00000271628 MAP1LC3CQ9BXW4 147 aa11.63□□□□□ -0.55
SF3B4-201ENST00000271628 HSPB8Q9UJY1 196 aa11.63□□□□□ -0.55
SF3B4-201ENST00000271628 LENEPQ9Y5L5 61 aa11.63□□□□□ -0.55
SF3B4-201ENST00000271628 LGALS9O00182 355 aa11.62□□□□□ -0.55
SF3B4-201ENST00000271628 OVOL1O14753 267 aa11.62□□□□□ -0.55
SF3B4-201ENST00000271628 ARMS2P0C7Q2 107 aa11.62□□□□□ -0.55
SF3B4-201ENST00000271628 TFPI2P48307 235 aa11.62□□□□□ -0.55
SF3B4-201ENST00000271628 ZNF738Q8NE65 137 aa11.62□□□□□ -0.55
SF3B4-201ENST00000271628 TMEM191AQ9H0A3 160 aa11.62□□□□□ -0.55
SF3B4-201ENST00000271628 YAE1D1Q9NRH1 226 aa11.62□□□□□ -0.55
SF3B4-201ENST00000271628 FLNAP21333 2647 aaKnown RBP11.62□□□□□ -0.55
SF3B4-201ENST00000271628 AKAP9Q99996 3911 aa11.61□□□□□ -0.55
SF3B4-201ENST00000271628 KRTAP1-1Q07627 177 aa11.61□□□□□ -0.55
SF3B4-201ENST00000271628 PRR31Q5SQ13 230 aa11.61□□□□□ -0.55
SF3B4-201ENST00000271628 PET117Q6UWS5 81 aa11.61□□□□□ -0.55
SF3B4-201ENST00000271628 SPATA12Q7Z6I5 190 aa11.61□□□□□ -0.55
SF3B4-201ENST00000271628 LINC00477Q96M19 166 aa11.61□□□□□ -0.55
SF3B4-201ENST00000271628 UNC79Q9P2D8 2635 aa11.61□□□□□ -0.55
SF3B4-201ENST00000271628 CCDC168Q8NDH2 2452 aa11.61□□□□□ -0.55
SF3B4-201ENST00000271628 NPSP0C0P6 89 aa11.61□□□□□ -0.55
SF3B4-201ENST00000271628 ZNF80P51504 273 aaPredicted RBP11.61□□□□□ -0.55
SF3B4-201ENST00000271628 ZNF493Q6ZR52 646 aa11.61□□□□□ -0.55
SF3B4-201ENST00000271628 GCN1Q92616 2671 aaKnown RBP11.61□□□□□ -0.55
SF3B4-201ENST00000271628 OR10J6PQ8NGY7 276 aa11.6□□□□□ -0.55
SF3B4-201ENST00000271628 DNAJC9-AS1A6NH13 148 aa11.59□□□□□ -0.55
SF3B4-201ENST00000271628 C20orf173Q96LM9 149 aa11.59□□□□□ -0.55
SF3B4-201ENST00000271628 AP5S1Q9NUS5 200 aa11.59□□□□□ -0.55
SF3B4-201ENST00000271628 IGHV4OR15-8A0A075B7B6 117 aa11.59□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 84 ms