RNA–Protein interactions for RNA: ENST00000252597.7

USHBP1-201, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USHBP1, Length 3,335 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-201ENST00000252597 LINC00311Q8N616 119 aa9.35□□□□□ -0.91
USHBP1-201ENST00000252597 SMIM12Q96EX1 92 aa9.35□□□□□ -0.91
USHBP1-201ENST00000252597 PKD1L2Q7Z442 2459 aa9.35□□□□□ -0.91
USHBP1-201ENST00000252597 TEX48A0A1B0GUV7 120 aa9.34□□□□□ -0.91
USHBP1-201ENST00000252597 SHISA9B4DS77 424 aa9.34□□□□□ -0.91
USHBP1-201ENST00000252597 NPIPB6E9PJ23 425 aa9.34□□□□□ -0.91
USHBP1-201ENST00000252597 H3BVH4 76 aa9.34□□□□□ -0.91
USHBP1-201ENST00000252597 C15orf32Q32M92 178 aa9.34□□□□□ -0.91
USHBP1-201ENST00000252597 PVRIGQ6DKI7 326 aa9.34□□□□□ -0.91
USHBP1-201ENST00000252597 ZNF502Q8TBZ5 544 aa9.34□□□□□ -0.91
USHBP1-201ENST00000252597 MYOZ3Q8TDC0 251 aa9.34□□□□□ -0.91
USHBP1-201ENST00000252597 CHAC1Q9BUX1 264 aa9.34□□□□□ -0.91
USHBP1-201ENST00000252597 RAXQ9Y2V3 346 aa9.34□□□□□ -0.91
USHBP1-201ENST00000252597 SRD5A1P18405 259 aa9.34□□□□□ -0.91
USHBP1-201ENST00000252597 NEGR1Q7Z3B1 354 aa9.34□□□□□ -0.91
USHBP1-201ENST00000252597 SH2D6Q7Z4S9 175 aa9.34□□□□□ -0.91
USHBP1-201ENST00000252597 TIMD4Q96H15 378 aa9.34□□□□□ -0.91
USHBP1-201ENST00000252597 MRPL35Q9NZE8 188 aaKnown RBP9.34□□□□□ -0.91
USHBP1-201ENST00000252597 H3BMG7 143 aa9.34□□□□□ -0.91
USHBP1-201ENST00000252597 C5orf64Q2M2E5 130 aa9.34□□□□□ -0.91
USHBP1-201ENST00000252597 ETDBQ3ZM63 59 aa9.34□□□□□ -0.91
USHBP1-201ENST00000252597 TMEM219Q86XT9 240 aa9.34□□□□□ -0.91
USHBP1-201ENST00000252597 PIP4P2Q8N4L2 257 aa9.34□□□□□ -0.91
USHBP1-201ENST00000252597 UBTD1Q9HAC8 227 aa9.34□□□□□ -0.91
USHBP1-201ENST00000252597 CSMD2Q7Z408 3487 aa9.34□□□□□ -0.91
USHBP1-201ENST00000252597 NACAE9PAV3 2078 aa9.34□□□□□ -0.92
USHBP1-201ENST00000252597 BSNQ9UPA5 3926 aa9.33□□□□□ -0.92
USHBP1-201ENST00000252597 LOC107984156A0A0G2JMH3 177 aa9.33□□□□□ -0.92
USHBP1-201ENST00000252597 A0A1W2PPM0 123 aa9.33□□□□□ -0.92
USHBP1-201ENST00000252597 FABP5P3A8MUU1 101 aa9.33□□□□□ -0.92
USHBP1-201ENST00000252597 IGKCP01834 107 aa9.33□□□□□ -0.92
USHBP1-201ENST00000252597 CEACAM3P40198 252 aa9.33□□□□□ -0.92
USHBP1-201ENST00000252597 SCGB1D4Q6XE38 83 aa9.33□□□□□ -0.92
USHBP1-201ENST00000252597 ARL17AQ8IVW1 177 aa9.33□□□□□ -0.92
USHBP1-201ENST00000252597 TMEM14CQ9P0S9 112 aa9.33□□□□□ -0.92
USHBP1-201ENST00000252597 CYSLTR1Q9Y271 337 aa9.33□□□□□ -0.92
USHBP1-201ENST00000252597 H3BRM9 83 aa9.33□□□□□ -0.92
USHBP1-201ENST00000252597 K7EP34 96 aa9.33□□□□□ -0.92
USHBP1-201ENST00000252597 PAX2Q02962 417 aa9.33□□□□□ -0.92
USHBP1-201ENST00000252597 SMIM17P0DL12 118 aa9.33□□□□□ -0.92
USHBP1-201ENST00000252597 Q6AWC8 147 aa9.33□□□□□ -0.92
USHBP1-201ENST00000252597 B9A039 149 aa9.32□□□□□ -0.92
USHBP1-201ENST00000252597 INS-IGF2F8WCM5 200 aa9.32□□□□□ -0.92
USHBP1-201ENST00000252597 LGALS9BQ3B8N2 356 aa9.32□□□□□ -0.92
USHBP1-201ENST00000252597 TMEM78Q5T7P6 136 aa9.32□□□□□ -0.92
USHBP1-201ENST00000252597 LGALS9CQ6DKI2 356 aa9.32□□□□□ -0.92
USHBP1-201ENST00000252597 DTX2Q86UW9 622 aa9.32□□□□□ -0.92
USHBP1-201ENST00000252597 CFHR4Q92496 578 aa9.32□□□□□ -0.92
USHBP1-201ENST00000252597 IGFL3Q6UXB1 125 aa9.32□□□□□ -0.92
USHBP1-201ENST00000252597 ADAMTSL5Q6ZMM2 481 aa9.32□□□□□ -0.92
USHBP1-201ENST00000252597 BOD1L2Q8IYS8 172 aa9.32□□□□□ -0.92
USHBP1-201ENST00000252597 VKORC1Q9BQB6 163 aa9.32□□□□□ -0.92
USHBP1-201ENST00000252597 TMEM238C9JI98 176 aa9.31□□□□□ -0.92
USHBP1-201ENST00000252597 IGHV3-11P01762 117 aa9.31□□□□□ -0.92
USHBP1-201ENST00000252597 FGF6P10767 208 aa9.31□□□□□ -0.92
USHBP1-201ENST00000252597 WFDC2Q14508 124 aa9.31□□□□□ -0.92
USHBP1-201ENST00000252597 FANCD2OSQ96PS1 177 aa9.31□□□□□ -0.92
USHBP1-201ENST00000252597 H7C2G1 150 aa9.31□□□□□ -0.92
USHBP1-201ENST00000252597 IGKV3-20P01619 116 aa9.31□□□□□ -0.92
USHBP1-201ENST00000252597 C16orf92Q96LL3 132 aa9.31□□□□□ -0.92
USHBP1-201ENST00000252597 RAB1BQ9H0U4 201 aa9.31□□□□□ -0.92
USHBP1-201ENST00000252597 APOMO95445 188 aa9.31□□□□□ -0.92
USHBP1-201ENST00000252597 SRSF9Q13242 221 aaKnown RBP eCLIP9.31□□□□□ -0.92
USHBP1-201ENST00000252597 OR4X2Q8NGF9 303 aa9.31□□□□□ -0.92
USHBP1-201ENST00000252597 ZNF418Q8TF45 676 aaPredicted RBP9.31□□□□□ -0.92
USHBP1-201ENST00000252597 TRBV25-1A0A075B6N4 114 aa9.3□□□□□ -0.92
USHBP1-201ENST00000252597 F5H697 171 aa9.3□□□□□ -0.92
USHBP1-201ENST00000252597 SCGB2A1O75556 95 aa9.3□□□□□ -0.92
USHBP1-201ENST00000252597 DPM2O94777 84 aa9.3□□□□□ -0.92
USHBP1-201ENST00000252597 CRYGBP07316 175 aa9.3□□□□□ -0.92
USHBP1-201ENST00000252597 OR9G4Q8NGQ1 327 aa9.3□□□□□ -0.92
USHBP1-201ENST00000252597 PPBPP02775 128 aa9.3□□□□□ -0.92
USHBP1-201ENST00000252597 ZNF479Q96JC4 524 aa9.3□□□□□ -0.92
USHBP1-201ENST00000252597 A0A1B0GW15 77 aa9.3□□□□□ -0.92
USHBP1-201ENST00000252597 LINC01548A6NM66 108 aa9.3□□□□□ -0.92
USHBP1-201ENST00000252597 SAMD13Q5VXD3 122 aa9.3□□□□□ -0.92
USHBP1-201ENST00000252597 TSSC4Q9Y5U2 329 aaPredicted RBP9.3□□□□□ -0.92
USHBP1-201ENST00000252597 IGF1P05019 195 aa9.29□□□□□ -0.92
USHBP1-201ENST00000252597 C14orf178Q8N769 122 aaPredicted RBP9.29□□□□□ -0.92
USHBP1-201ENST00000252597 MTORP42345 2549 aa9.29□□□□□ -0.92
USHBP1-201ENST00000252597 CTSGP08311 255 aa9.29□□□□□ -0.92
USHBP1-201ENST00000252597 HTN1P15515 57 aa9.29□□□□□ -0.92
USHBP1-201ENST00000252597 VMO1Q7Z5L0 202 aa9.29□□□□□ -0.92
USHBP1-201ENST00000252597 MAPKAPK5-AS1Q8N8E1 139 aa9.29□□□□□ -0.92
USHBP1-201ENST00000252597 NPFFR1Q9GZQ6 430 aa9.29□□□□□ -0.92
USHBP1-201ENST00000252597 MSRB2Q9Y3D2 182 aa9.29□□□□□ -0.92
USHBP1-201ENST00000252597 A0A1B0GWB2 263 aa9.28□□□□□ -0.92
USHBP1-201ENST00000252597 LY6EQ16553 131 aa9.28□□□□□ -0.92
USHBP1-201ENST00000252597 C3orf36Q3SXR2 165 aa9.28□□□□□ -0.92
USHBP1-201ENST00000252597 CD300EQ496F6 205 aaPredicted RBP9.28□□□□□ -0.92
USHBP1-201ENST00000252597 KAAG1Q9UBP8 84 aa9.28□□□□□ -0.92
USHBP1-201ENST00000252597 F6UB75 175 aa9.28□□□□□ -0.92
USHBP1-201ENST00000252597 AGPAT4-IT1Q9H0P7 198 aa9.28□□□□□ -0.92
USHBP1-201ENST00000252597 TMEM238LA0A1B0GVL6 79 aa9.28□□□□□ -0.92
USHBP1-201ENST00000252597 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP9.28□□□□□ -0.92
USHBP1-201ENST00000252597 ODF1Q14990 250 aa9.28□□□□□ -0.92
USHBP1-201ENST00000252597 TNFRSF14Q92956 283 aa9.28□□□□□ -0.92
USHBP1-201ENST00000252597 SCGB3A1Q96QR1 104 aa9.28□□□□□ -0.92
USHBP1-201ENST00000252597 SMAD5-AS1Q9Y6J3 95 aa9.28□□□□□ -0.92
USHBP1-201ENST00000252597 FAM74A4Q5TZK3 123 aa9.27□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms