RNA–Protein interactions for RNA: ENST00000642141.1

SCN1A-222, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 921 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-222ENST00000642141 C1orf134Q5TEV5 83 aa7.2□□□□□ -1.26
SCN1A-222ENST00000642141 Q6ZQT7 251 aa7.2□□□□□ -1.26
SCN1A-222ENST00000642141 ZNF493Q6ZR52 646 aa7.2□□□□□ -1.26
SCN1A-222ENST00000642141 VGLL1Q99990 258 aa7.2□□□□□ -1.26
SCN1A-222ENST00000642141 SLC25A31Q9H0C2 315 aa7.2□□□□□ -1.26
SCN1A-222ENST00000642141 AGPAT4-IT1Q9H0P7 198 aa7.2□□□□□ -1.26
SCN1A-222ENST00000642141 GSN-AS1Q9NRJ2 163 aa7.2□□□□□ -1.26
SCN1A-222ENST00000642141 TMEM14CQ9P0S9 112 aa7.2□□□□□ -1.26
SCN1A-222ENST00000642141 PKD1P98161 4303 aa7.2□□□□□ -1.26
SCN1A-222ENST00000642141 KIAA1109Q2LD37 5005 aa7.2□□□□□ -1.26
SCN1A-222ENST00000642141 SNURFLB1AK76 121 aa7.19□□□□□ -1.26
SCN1A-222ENST00000642141 SSNA1O43805 119 aa7.19□□□□□ -1.26
SCN1A-222ENST00000642141 MPDU1O75352 247 aa7.19□□□□□ -1.26
SCN1A-222ENST00000642141 HOXA5P20719 270 aa7.19□□□□□ -1.26
SCN1A-222ENST00000642141 H2BFSP57053 126 aa7.19□□□□□ -1.26
SCN1A-222ENST00000642141 Q6ZTI0 123 aa7.19□□□□□ -1.26
SCN1A-222ENST00000642141 FAM167A-AS1Q96KT0 104 aa7.19□□□□□ -1.26
SCN1A-222ENST00000642141 SMIM3Q9BZL3 60 aa7.19□□□□□ -1.26
SCN1A-222ENST00000642141 NMES1Q9C002 83 aa7.19□□□□□ -1.26
SCN1A-222ENST00000642141 TMPRSS5Q9H3S3 457 aa7.19□□□□□ -1.26
SCN1A-222ENST00000642141 LINC00588Q9Y4M8 146 aa7.19□□□□□ -1.26
SCN1A-222ENST00000642141 C7orf71A4D174 169 aa7.18□□□□□ -1.26
SCN1A-222ENST00000642141 SLC25A5P05141 298 aaKnown RBP7.18□□□□□ -1.26
SCN1A-222ENST00000642141 GPX1P07203 203 aa7.18□□□□□ -1.26
SCN1A-222ENST00000642141 NBEAP1P0C6P0 100 aa7.18□□□□□ -1.26
SCN1A-222ENST00000642141 CCL18P55774 89 aa7.18□□□□□ -1.26
SCN1A-222ENST00000642141 SSX7Q7RTT5 188 aa7.18□□□□□ -1.26
SCN1A-222ENST00000642141 ZNRF2Q8NHG8 242 aa7.18□□□□□ -1.26
SCN1A-222ENST00000642141 PPP1R1CQ8WVI7 109 aa7.18□□□□□ -1.26
SCN1A-222ENST00000642141 GNPNAT1Q96EK6 184 aaPredicted RBP7.18□□□□□ -1.26
SCN1A-222ENST00000642141 C20orf144Q9BQM9 153 aa7.18□□□□□ -1.26
SCN1A-222ENST00000642141 WDR61Q9GZS3 305 aaKnown RBP7.18□□□□□ -1.26
SCN1A-222ENST00000642141 OR51M1Q9H341 326 aa7.18□□□□□ -1.26
SCN1A-222ENST00000642141 AAMDCQ9H7C9 122 aa7.18□□□□□ -1.26
SCN1A-222ENST00000642141 NACAE9PAV3 2078 aa7.18□□□□□ -1.26
SCN1A-222ENST00000642141 PCLOQ9Y6V0 5065 aa7.17□□□□□ -1.26
SCN1A-222ENST00000642141 OR7C2O60412 319 aa7.17□□□□□ -1.26
SCN1A-222ENST00000642141 ZNF253O75346 499 aa7.17□□□□□ -1.26
SCN1A-222ENST00000642141 M6PRP20645 277 aa7.17□□□□□ -1.26
SCN1A-222ENST00000642141 RANP62826 216 aaKnown RBP7.17□□□□□ -1.26
SCN1A-222ENST00000642141 NDUFA5Q16718 116 aa7.17□□□□□ -1.26
SCN1A-222ENST00000642141 SOHLH1Q5JUK2 328 aa7.17□□□□□ -1.26
SCN1A-222ENST00000642141 PRR9Q5T870 116 aa7.17□□□□□ -1.26
SCN1A-222ENST00000642141 Q8TAT8 98 aa7.17□□□□□ -1.26
SCN1A-222ENST00000642141 FXYD5Q96DB9 178 aa7.17□□□□□ -1.26
SCN1A-222ENST00000642141 MRPL53Q96EL3 112 aaKnown RBP7.17□□□□□ -1.26
SCN1A-222ENST00000642141 PHYHIPLQ96FC7 376 aa7.17□□□□□ -1.26
SCN1A-222ENST00000642141 LINC00477Q96M19 166 aa7.17□□□□□ -1.26
SCN1A-222ENST00000642141 ODF3Q96PU9 254 aa7.17□□□□□ -1.26
SCN1A-222ENST00000642141 PYGO2Q9BRQ0 406 aa7.17□□□□□ -1.26
SCN1A-222ENST00000642141 PAXXQ9BUH6 204 aa7.17□□□□□ -1.26
SCN1A-222ENST00000642141 TP53TG3Q9ULZ0 132 aa7.17□□□□□ -1.26
SCN1A-222ENST00000642141 PRELID1Q9Y255 219 aa7.17□□□□□ -1.26
SCN1A-222ENST00000642141 KLF12Q9Y4X4 402 aa7.17□□□□□ -1.26
SCN1A-222ENST00000642141 TRGV2A0A075B6R0 118 aa7.16□□□□□ -1.26
SCN1A-222ENST00000642141 TRGV1A0A0A0MS02 117 aa7.16□□□□□ -1.26
SCN1A-222ENST00000642141 NBDYA0A0U1RRE5 68 aa7.16□□□□□ -1.26
SCN1A-222ENST00000642141 PRAF2O60831 178 aa7.16□□□□□ -1.26
SCN1A-222ENST00000642141 ZNF324O75467 553 aaPredicted RBP7.16□□□□□ -1.26
SCN1A-222ENST00000642141 MPC2O95563 127 aa7.16□□□□□ -1.26
SCN1A-222ENST00000642141 CYCSP99999 105 aaKnown RBP7.16□□□□□ -1.26
SCN1A-222ENST00000642141 TNP2Q05952 138 aa7.16□□□□□ -1.26
SCN1A-222ENST00000642141 PDE6HQ13956 83 aa7.16□□□□□ -1.26
SCN1A-222ENST00000642141 FFAR4Q5NUL3 377 aa7.16□□□□□ -1.26
SCN1A-222ENST00000642141 TMEM78Q5T7P6 136 aa7.16□□□□□ -1.26
SCN1A-222ENST00000642141 ZNF575Q86XF7 245 aa7.16□□□□□ -1.26
SCN1A-222ENST00000642141 LINC00612Q8N6U2 182 aa7.16□□□□□ -1.26
SCN1A-222ENST00000642141 FAM19A4Q96LR4 140 aa7.16□□□□□ -1.26
SCN1A-222ENST00000642141 HYLS1Q96M11 299 aa7.16□□□□□ -1.26
SCN1A-222ENST00000642141 ATP5SQ99766 215 aa7.16□□□□□ -1.26
SCN1A-222ENST00000642141 MARVELD1Q9BSK0 173 aa7.16□□□□□ -1.26
SCN1A-222ENST00000642141 FUT9Q9Y231 359 aa7.16□□□□□ -1.26
SCN1A-222ENST00000642141 hCG_2014768A0A024R1R8 64 aa7.15□□□□□ -1.26
SCN1A-222ENST00000642141 KLLNB2CW77 178 aa7.15□□□□□ -1.26
SCN1A-222ENST00000642141 RGS13O14921 159 aa7.15□□□□□ -1.26
SCN1A-222ENST00000642141 IGHV3-53P01767 116 aa7.15□□□□□ -1.26
SCN1A-222ENST00000642141 RPL12P30050 165 aaKnown RBP7.15□□□□□ -1.26
SCN1A-222ENST00000642141 FAM3BP58499 235 aaPredicted RBP7.15□□□□□ -1.26
SCN1A-222ENST00000642141 ESRGQ1W209 222 aa7.15□□□□□ -1.26
SCN1A-222ENST00000642141 MUC21Q5SSG8 566 aa7.15□□□□□ -1.26
SCN1A-222ENST00000642141 C9orf47Q6ZRZ4 202 aa7.15□□□□□ -1.26
SCN1A-222ENST00000642141 EIF4E3Q8N5X7 224 aaKnown RBP7.15□□□□□ -1.26
SCN1A-222ENST00000642141 ZFAND2AQ8N6M9 145 aa7.15□□□□□ -1.26
SCN1A-222ENST00000642141 C11orf72Q8NBR9 251 aa7.15□□□□□ -1.26
SCN1A-222ENST00000642141 SCGB1C1Q8TD33 95 aa7.15□□□□□ -1.26
SCN1A-222ENST00000642141 RXFP4Q8TDU9 374 aa7.15□□□□□ -1.26
SCN1A-222ENST00000642141 ZNF503Q96F45 646 aa7.15□□□□□ -1.26
SCN1A-222ENST00000642141 WFDC1Q9HC57 220 aa7.15□□□□□ -1.26
SCN1A-222ENST00000642141 HSPB11Q9Y547 144 aa7.15□□□□□ -1.26
SCN1A-222ENST00000642141 C17orf112F2Z3M2 114 aa7.14□□□□□ -1.27
SCN1A-222ENST00000642141 IFNA5P01569 189 aa7.14□□□□□ -1.27
SCN1A-222ENST00000642141 ZNF138P52744 262 aa7.14□□□□□ -1.27
SCN1A-222ENST00000642141 UBE2L3P68036 154 aaKnown RBP7.14□□□□□ -1.27
SCN1A-222ENST00000642141 DAZ2Q13117 558 aaKnown RBP7.14□□□□□ -1.27
SCN1A-222ENST00000642141 C6orf223Q8N319 242 aa7.14□□□□□ -1.27
SCN1A-222ENST00000642141 MRPL32Q9BYC8 188 aaKnown RBP7.14□□□□□ -1.27
SCN1A-222ENST00000642141 Q9H3A6 140 aa7.14□□□□□ -1.27
SCN1A-222ENST00000642141 Q9H8V8 135 aa7.14□□□□□ -1.27
SCN1A-222ENST00000642141 KCNIP2Q9NS61 270 aa7.14□□□□□ -1.27
SCN1A-222ENST00000642141 MRPL16Q9NX20 251 aaKnown RBP7.14□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms