RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 CCL28Q9NRJ3 127 aa2.3□□□□□ -2.04
SCN1A-219ENST00000641575 TENM3Q9P273 2699 aa2.3□□□□□ -2.04
SCN1A-219ENST00000641575 ATOX1O00244 68 aa2.3□□□□□ -2.04
SCN1A-219ENST00000641575 RND2P52198 227 aa2.3□□□□□ -2.04
SCN1A-219ENST00000641575 FOXA3P55318 350 aaPredicted RBP2.3□□□□□ -2.04
SCN1A-219ENST00000641575 MP68P56378 58 aa2.3□□□□□ -2.04
SCN1A-219ENST00000641575 BSPH1Q075Z2 132 aa2.3□□□□□ -2.04
SCN1A-219ENST00000641575 GUSBP1Q15486 140 aa2.3□□□□□ -2.04
SCN1A-219ENST00000641575 RPUSD1Q9UJJ7 312 aaKnown RBP2.3□□□□□ -2.04
SCN1A-219ENST00000641575 A0A0A6YYD5 115 aa2.3□□□□□ -2.04
SCN1A-219ENST00000641575 IGHV3-21A0A0B4J1V1 117 aa2.3□□□□□ -2.04
SCN1A-219ENST00000641575 A0A1B0GWJ7 208 aa2.3□□□□□ -2.04
SCN1A-219ENST00000641575 TRBV12-3P01733 135 aa2.3□□□□□ -2.04
SCN1A-219ENST00000641575 GFERP55789 205 aa2.3□□□□□ -2.04
SCN1A-219ENST00000641575 IGHV3-20A0A0C4DH32 117 aa2.3□□□□□ -2.04
SCN1A-219ENST00000641575 GREM1O60565 184 aa2.3□□□□□ -2.04
SCN1A-219ENST00000641575 FOXF1Q12946 379 aa2.3□□□□□ -2.04
SCN1A-219ENST00000641575 NMSQ5H8A3 153 aa2.3□□□□□ -2.04
SCN1A-219ENST00000641575 LINC01465Q8N7H1 131 aa2.3□□□□□ -2.04
SCN1A-219ENST00000641575 WFDC9Q8NEX5 89 aa2.3□□□□□ -2.04
SCN1A-219ENST00000641575 ICOSQ9Y6W8 199 aa2.3□□□□□ -2.04
SCN1A-219ENST00000641575 PLA2G10O15496 165 aa2.3□□□□□ -2.04
SCN1A-219ENST00000641575 ITGBL1O95965 494 aaPredicted RBP2.3□□□□□ -2.04
SCN1A-219ENST00000641575 LYL1P12980 280 aa2.3□□□□□ -2.04
SCN1A-219ENST00000641575 ATRAIDQ6UW56 229 aa2.3□□□□□ -2.04
SCN1A-219ENST00000641575 TMEM61Q8N0U2 210 aa2.3□□□□□ -2.04
SCN1A-219ENST00000641575 ZNF708P17019 499 aa2.3□□□□□ -2.04
SCN1A-219ENST00000641575 MRPL27Q9P0M9 148 aaKnown RBP2.3□□□□□ -2.04
SCN1A-219ENST00000641575 TRGV1A0A0A0MS02 117 aa2.3□□□□□ -2.04
SCN1A-219ENST00000641575 TRAV24A0A0B4J272 114 aa2.3□□□□□ -2.04
SCN1A-219ENST00000641575 IGHV5-51A0A0C4DH38 117 aa2.3□□□□□ -2.04
SCN1A-219ENST00000641575 PIN1P1O15428 100 aa2.3□□□□□ -2.04
SCN1A-219ENST00000641575 C8orf88P0DMB2 117 aa2.3□□□□□ -2.04
SCN1A-219ENST00000641575 PIGYQ3MUY2 71 aa2.3□□□□□ -2.04
SCN1A-219ENST00000641575 OR11H6Q8NGC7 330 aa2.3□□□□□ -2.04
SCN1A-219ENST00000641575 ITPR1Q14643 2758 aa2.29□□□□□ -2.04
SCN1A-219ENST00000641575 hDV102S1A0JD36 115 aa2.29□□□□□ -2.04
SCN1A-219ENST00000641575 FAM90A9PA6NNJ1 464 aa2.29□□□□□ -2.04
SCN1A-219ENST00000641575 IGKV3-20P01619 116 aa2.29□□□□□ -2.04
SCN1A-219ENST00000641575 IGHMP01871 453 aa2.29□□□□□ -2.04
SCN1A-219ENST00000641575 ACYP1P07311 99 aa2.29□□□□□ -2.04
SCN1A-219ENST00000641575 PSG7Q13046 419 aa2.29□□□□□ -2.04
SCN1A-219ENST00000641575 C20orf173Q96LM9 149 aa2.29□□□□□ -2.04
SCN1A-219ENST00000641575 YPEL2Q96QA6 119 aa2.29□□□□□ -2.04
SCN1A-219ENST00000641575 MRPL36Q9P0J6 103 aaKnown RBP2.29□□□□□ -2.04
SCN1A-219ENST00000641575 RPL36A-HNRNPH2H7BZ11 118 aa2.29□□□□□ -2.04
SCN1A-219ENST00000641575 K7EP13 123 aa2.29□□□□□ -2.04
SCN1A-219ENST00000641575 SOCS1O15524 211 aa2.29□□□□□ -2.04
SCN1A-219ENST00000641575 ZG16O60844 167 aa2.29□□□□□ -2.04
SCN1A-219ENST00000641575 FAM27BQ5VT28 67 aa2.29□□□□□ -2.04
SCN1A-219ENST00000641575 KCNE3Q9Y6H6 103 aa2.29□□□□□ -2.04
SCN1A-219ENST00000641575 H3BUA1 57 aa2.29□□□□□ -2.04
SCN1A-219ENST00000641575 SUPT4H1P63272 117 aaKnown RBP2.29□□□□□ -2.04
SCN1A-219ENST00000641575 TCF15Q12870 199 aa2.29□□□□□ -2.04
SCN1A-219ENST00000641575 ZFP2Q6ZN57 461 aa2.29□□□□□ -2.04
SCN1A-219ENST00000641575 CCL25O15444 150 aa2.29□□□□□ -2.04
SCN1A-219ENST00000641575 TRIAP1O43715 76 aa2.29□□□□□ -2.04
SCN1A-219ENST00000641575 PRB3Q04118 309 aaPredicted RBP2.29□□□□□ -2.04
SCN1A-219ENST00000641575 DMKNQ6E0U4 476 aaPredicted RBP2.29□□□□□ -2.04
SCN1A-219ENST00000641575 LINC00322Q6ZN03 302 aaPredicted RBP2.29□□□□□ -2.04
SCN1A-219ENST00000641575 CYP2G1PQ6ZSU1 146 aa2.29□□□□□ -2.04
SCN1A-219ENST00000641575 LRRC75A-AS1Q8N1F1 130 aa2.29□□□□□ -2.04
SCN1A-219ENST00000641575 C11orf44Q8N8P7 122 aa2.29□□□□□ -2.04
SCN1A-219ENST00000641575 AMELYQ99218 206 aa2.29□□□□□ -2.04
SCN1A-219ENST00000641575 EGR4Q05215 589 aa2.29□□□□□ -2.04
SCN1A-219ENST00000641575 ZNF79Q15937 498 aa2.29□□□□□ -2.04
SCN1A-219ENST00000641575 HCP5Q6MZN7 132 aa2.29□□□□□ -2.04
SCN1A-219ENST00000641575 HEPN1Q6WQI6 88 aa2.29□□□□□ -2.04
SCN1A-219ENST00000641575 TIMM21Q9BVV7 248 aa2.29□□□□□ -2.04
SCN1A-219ENST00000641575 IGKV3D-20A0A0C4DH25 116 aa2.29□□□□□ -2.04
SCN1A-219ENST00000641575 J3QRE1 110 aa2.29□□□□□ -2.04
SCN1A-219ENST00000641575 TCL1BO95988 128 aa2.29□□□□□ -2.04
SCN1A-219ENST00000641575 EDN2P20800 178 aa2.29□□□□□ -2.04
SCN1A-219ENST00000641575 UBE2D3P61077 147 aa2.29□□□□□ -2.04
SCN1A-219ENST00000641575 C1orf195Q5TG92 126 aa2.29□□□□□ -2.04
SCN1A-219ENST00000641575 CDCP2Q5VXM1 449 aa2.29□□□□□ -2.04
SCN1A-219ENST00000641575 LINC00482Q8N8I6 264 aa2.29□□□□□ -2.04
SCN1A-219ENST00000641575 IGHV3OR15-7A0A075B7D8 119 aa2.29□□□□□ -2.04
SCN1A-219ENST00000641575 IGKV2D-26A0A0A0MRZ7 120 aa2.29□□□□□ -2.04
SCN1A-219ENST00000641575 NPIPB13A6NJU9 1138 aa2.29□□□□□ -2.04
SCN1A-219ENST00000641575 ELANEP08246 267 aa2.29□□□□□ -2.04
SCN1A-219ENST00000641575 NPSP0C0P6 89 aa2.29□□□□□ -2.04
SCN1A-219ENST00000641575 LOXL1Q08397 574 aaPredicted RBP2.29□□□□□ -2.04
SCN1A-219ENST00000641575 CSTL1Q9H114 145 aa2.29□□□□□ -2.04
SCN1A-219ENST00000641575 MYMXA0A1B0GTQ4 84 aa2.29□□□□□ -2.04
SCN1A-219ENST00000641575 SYS1-DBNDD2H3BUS1 97 aa2.29□□□□□ -2.04
SCN1A-219ENST00000641575 EFNA2O43921 213 aa2.29□□□□□ -2.04
SCN1A-219ENST00000641575 PROP1O75360 226 aa2.29□□□□□ -2.04
SCN1A-219ENST00000641575 ZAR1Q86SH2 424 aa2.29□□□□□ -2.04
SCN1A-219ENST00000641575 CCL13Q99616 98 aa2.29□□□□□ -2.04
SCN1A-219ENST00000641575 REG4Q9BYZ8 158 aa2.29□□□□□ -2.04
SCN1A-219ENST00000641575 IGKV6D-21A0A0A0MT36 114 aa2.29□□□□□ -2.04
SCN1A-219ENST00000641575 TRAV12-1A0A0B4J245 112 aa2.29□□□□□ -2.04
SCN1A-219ENST00000641575 SCO2A0A1W2PP80 73 aa2.29□□□□□ -2.04
SCN1A-219ENST00000641575 SRP19P09132 144 aaKnown RBP2.29□□□□□ -2.04
SCN1A-219ENST00000641575 KLRD1Q13241 179 aa2.29□□□□□ -2.04
SCN1A-219ENST00000641575 TRPT1Q86TN4 253 aaKnown RBP2.29□□□□□ -2.04
SCN1A-219ENST00000641575 A0A0U1RQS6 177 aa2.29□□□□□ -2.04
SCN1A-219ENST00000641575 IL15RAQ13261 267 aa2.29□□□□□ -2.04
SCN1A-219ENST00000641575 CR1LQ2VPA4 569 aa2.29□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms