RNA–Protein interactions for RNA: ENST00000636172.1

CLN3-245, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,536 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-245ENST00000636172 SGK494Q96LW2 274 aa15.24■□□□□ 0.03
CLN3-245ENST00000636172 RPL35P42766 123 aaKnown RBP15.23■□□□□ 0.03
CLN3-245ENST00000636172 CNN1P51911 297 aaKnown RBP15.23■□□□□ 0.03
CLN3-245ENST00000636172 Q8N1Y9 231 aa15.23■□□□□ 0.03
CLN3-245ENST00000636172 AGPAT4-IT1Q9H0P7 198 aa15.23■□□□□ 0.03
CLN3-245ENST00000636172 ZMAT5Q9UDW3 170 aaKnown RBP15.23■□□□□ 0.03
CLN3-245ENST00000636172 SFTA3P0C7M3 94 aa15.22■□□□□ 0.03
CLN3-245ENST00000636172 HLA-DRB4P13762 266 aa15.22■□□□□ 0.03
CLN3-245ENST00000636172 TMEM183BQ1AE95 376 aa15.22■□□□□ 0.03
CLN3-245ENST00000636172 PARLQ9H300 379 aa15.22■□□□□ 0.03
CLN3-245ENST00000636172 HLA-DRB4X5D2U9 266 aa15.22■□□□□ 0.03
CLN3-245ENST00000636172 DEFB125Q8N687 156 aa15.22■□□□□ 0.03
CLN3-245ENST00000636172 Q8TAT8 98 aa15.22■□□□□ 0.03
CLN3-245ENST00000636172 FMC1Q96HJ9 113 aa15.22■□□□□ 0.03
CLN3-245ENST00000636172 CITED4Q96RK1 184 aa15.22■□□□□ 0.03
CLN3-245ENST00000636172 DNAH3Q8TD57 4116 aa15.22■□□□□ 0.03
CLN3-245ENST00000636172 H3BMM0 161 aa15.21■□□□□ 0.03
CLN3-245ENST00000636172 UBE2G1P62253 170 aa15.21■□□□□ 0.03
CLN3-245ENST00000636172 FLI1Q01543 452 aaPredicted RBP15.21■□□□□ 0.03
CLN3-245ENST00000636172 Q86TA4 180 aa15.21■□□□□ 0.03
CLN3-245ENST00000636172 ASCL2Q99929 193 aa15.21■□□□□ 0.03
CLN3-245ENST00000636172 PSG8Q9UQ74 426 aa15.21■□□□□ 0.03
CLN3-245ENST00000636172 DUSP14O95147 198 aaKnown RBP15.2■□□□□ 0.02
CLN3-245ENST00000636172 S100A9P06702 114 aaKnown RBP15.2■□□□□ 0.02
CLN3-245ENST00000636172 CT45A10P0DMU9 189 aa15.2■□□□□ 0.02
CLN3-245ENST00000636172 ZNF674Q2M3X9 581 aa15.2■□□□□ 0.02
CLN3-245ENST00000636172 TMEM78Q5T7P6 136 aa15.2■□□□□ 0.02
CLN3-245ENST00000636172 PRNTQ86SH4 94 aa15.2■□□□□ 0.02
CLN3-245ENST00000636172 TRBV20OR9-2A0A075B6H5 130 aa15.19■□□□□ 0.02
CLN3-245ENST00000636172 TRBV6-1A0A0K0K1D8 114 aa15.19■□□□□ 0.02
CLN3-245ENST00000636172 TMEM218A2RU14 115 aa15.19■□□□□ 0.02
CLN3-245ENST00000636172 FBLL1A6NHQ2 334 aaKnown RBP15.19■□□□□ 0.02
CLN3-245ENST00000636172 IGKV3-20P01619 116 aa15.19■□□□□ 0.02
CLN3-245ENST00000636172 ZNF138P52744 262 aa15.19■□□□□ 0.02
CLN3-245ENST00000636172 KPRPQ5T749 579 aaPredicted RBP15.19■□□□□ 0.02
CLN3-245ENST00000636172 OR4B1Q8NGF8 309 aa15.19■□□□□ 0.02
CLN3-245ENST00000636172 IGF2BP2-AS1Q96M15 143 aa15.19■□□□□ 0.02
CLN3-245ENST00000636172 LINC00477Q96M19 166 aa15.19■□□□□ 0.02
CLN3-245ENST00000636172 ZNF492Q9P255 531 aa15.19■□□□□ 0.02
CLN3-245ENST00000636172 A8MTW9 85 aa15.18■□□□□ 0.02
CLN3-245ENST00000636172 TAS2R60P59551 318 aa15.18■□□□□ 0.02
CLN3-245ENST00000636172 CENPWQ5EE01 88 aa15.18■□□□□ 0.02
CLN3-245ENST00000636172 SOHLH1Q5JUK2 328 aa15.18■□□□□ 0.02
CLN3-245ENST00000636172 TVP23CQ96ET8 276 aa15.18■□□□□ 0.02
CLN3-245ENST00000636172 SMIM7Q9BQ49 75 aa15.18■□□□□ 0.02
CLN3-245ENST00000636172 RBMY1BA6NDE4 496 aaKnown RBP15.17■□□□□ 0.02
CLN3-245ENST00000636172 RBMY1EA6NEQ0 496 aaKnown RBP15.17■□□□□ 0.02
CLN3-245ENST00000636172 LTAP01374 205 aa15.17■□□□□ 0.02
CLN3-245ENST00000636172 RBMY1DP0C7P1 496 aaKnown RBP15.17■□□□□ 0.02
CLN3-245ENST00000636172 AMTNQ6UX39 209 aa15.17■□□□□ 0.02
CLN3-245ENST00000636172 TRPT1Q86TN4 253 aaKnown RBP15.17■□□□□ 0.02
CLN3-245ENST00000636172 STHQ8IWL8 128 aa15.17■□□□□ 0.02
CLN3-245ENST00000636172 PPP1R14DQ9NXH3 145 aa15.17■□□□□ 0.02
CLN3-245ENST00000636172 ZNF727A8MUV8 499 aa15.17■□□□□ 0.02
CLN3-245ENST00000636172 ADCYAP1P18509 176 aa15.17■□□□□ 0.02
CLN3-245ENST00000636172 FAM19A4Q96LR4 140 aa15.17■□□□□ 0.02
CLN3-245ENST00000636172 C9JCJ5 164 aa15.16■□□□□ 0.02
CLN3-245ENST00000636172 GNG4P50150 75 aa15.16■□□□□ 0.02
CLN3-245ENST00000636172 CLUHP3Q96NS8 147 aa15.16■□□□□ 0.02
CLN3-245ENST00000636172 SRD5A3Q9H8P0 318 aa15.16■□□□□ 0.02
CLN3-245ENST00000636172 PGPEP1LA6NFU8 196 aa15.15■□□□□ 0.02
CLN3-245ENST00000636172 FAM74A3Q4VXF1 159 aa15.15■□□□□ 0.02
CLN3-245ENST00000636172 BAGE2Q86Y30 109 aa15.15■□□□□ 0.02
CLN3-245ENST00000636172 ODF3Q96PU9 254 aa15.15■□□□□ 0.02
CLN3-245ENST00000636172 ZFP30Q9Y2G7 519 aa15.15■□□□□ 0.02
CLN3-245ENST00000636172 LENEPQ9Y5L5 61 aa15.15■□□□□ 0.02
CLN3-245ENST00000636172 IGLV2-8P01709 118 aa15.14■□□□□ 0.01
CLN3-245ENST00000636172 NHLRC2Q8NBF2 726 aa15.14■□□□□ 0.01
CLN3-245ENST00000636172 C8orf49Q96NF6 230 aa15.14■□□□□ 0.01
CLN3-245ENST00000636172 SAPCD1Q5SSQ6 148 aa15.13■□□□□ 0.01
CLN3-245ENST00000636172 ZFAND2AQ8N6M9 145 aa15.13■□□□□ 0.01
CLN3-245ENST00000636172 NDFIP1Q9BT67 221 aa15.13■□□□□ 0.01
CLN3-245ENST00000636172 MLST8Q9BVC4 326 aa15.13■□□□□ 0.01
CLN3-245ENST00000636172 TRBV7-9A0A0J9YWB2 115 aa15.12■□□□□ 0.01
CLN3-245ENST00000636172 F8W036 122 aa15.12■□□□□ 0.01
CLN3-245ENST00000636172 CRISP2P16562 243 aa15.12■□□□□ 0.01
CLN3-245ENST00000636172 RPL35AP18077 110 aaKnown RBP15.12■□□□□ 0.01
CLN3-245ENST00000636172 TMEM183AQ8IXX5 376 aa15.12■□□□□ 0.01
CLN3-245ENST00000636172 SEC11CQ9BY50 192 aa15.12■□□□□ 0.01
CLN3-245ENST00000636172 M0R2Z0 102 aa15.12■□□□□ 0.01
CLN3-245ENST00000636172 PRB2P02812 416 aaPredicted RBP15.12■□□□□ 0.01
CLN3-245ENST00000636172 IGHV4-30-4P0DP06 118 aa15.12■□□□□ 0.01
CLN3-245ENST00000636172 KIR3DS1Q14943 382 aa15.12■□□□□ 0.01
CLN3-245ENST00000636172 SPINK13Q1W4C9 94 aa15.12■□□□□ 0.01
CLN3-245ENST00000636172 PRR9Q5T870 116 aa15.12■□□□□ 0.01
CLN3-245ENST00000636172 LEPP41159 167 aa15.11■□□□□ 0.01
CLN3-245ENST00000636172 FXYD7P58549 80 aa15.11■□□□□ 0.01
CLN3-245ENST00000636172 TMEM241Q24JQ0 296 aa15.11■□□□□ 0.01
CLN3-245ENST00000636172 C10orf91Q5T1B1 145 aa15.11■□□□□ 0.01
CLN3-245ENST00000636172 COX8CQ7Z4L0 72 aa15.11■□□□□ 0.01
CLN3-245ENST00000636172 OCC1Q8TAD7 63 aa15.11■□□□□ 0.01
CLN3-245ENST00000636172 SMIM12Q96EX1 92 aa15.11■□□□□ 0.01
CLN3-245ENST00000636172 ZC2HC1AQ96GY0 325 aa15.11■□□□□ 0.01
CLN3-245ENST00000636172 AURKAIP1Q9NWT8 199 aaPredicted RBP15.11■□□□□ 0.01
CLN3-245ENST00000636172 NAT8Q9UHE5 227 aa15.11■□□□□ 0.01
CLN3-245ENST00000636172 KLLNB2CW77 178 aa15.1■□□□□ 0.01
CLN3-245ENST00000636172 J3KRW8 73 aa15.1■□□□□ 0.01
CLN3-245ENST00000636172 LINC01551Q86U37 167 aa15.1■□□□□ 0.01
CLN3-245ENST00000636172 NIPSNAP3BQ9BS92 247 aa15.1■□□□□ 0.01
CLN3-245ENST00000636172 TUBA4BQ9H853 241 aa15.1■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms