RNA–Protein interactions for RNA: ENST00000619079.1

UPF3A-212, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 2,423 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-212ENST00000619079 IGLV2-23P01705 113 aa8.52□□□□□ -1.05
UPF3A-212ENST00000619079 LEPP41159 167 aa8.52□□□□□ -1.05
UPF3A-212ENST00000619079 CCL21O00585 134 aa8.52□□□□□ -1.05
UPF3A-212ENST00000619079 GTSCR1Q86UQ5 136 aa8.52□□□□□ -1.05
UPF3A-212ENST00000619079 CNEP1R1Q8N9A8 125 aa8.52□□□□□ -1.05
UPF3A-212ENST00000619079 SYT8Q8NBV8 401 aa8.52□□□□□ -1.05
UPF3A-212ENST00000619079 HIST1H4GQ99525 98 aa8.52□□□□□ -1.05
UPF3A-212ENST00000619079 TTTY13Q9BZ97 58 aa8.52□□□□□ -1.05
UPF3A-212ENST00000619079 ZNRD1Q9P1U0 126 aa8.52□□□□□ -1.05
UPF3A-212ENST00000619079 NCBP2LA6PVI3 153 aaKnown RBP8.51□□□□□ -1.05
UPF3A-212ENST00000619079 HCP5Q6MZN7 132 aa8.51□□□□□ -1.05
UPF3A-212ENST00000619079 AMTNQ6UX39 209 aa8.51□□□□□ -1.05
UPF3A-212ENST00000619079 SIGLEC15Q6ZMC9 328 aa8.51□□□□□ -1.05
UPF3A-212ENST00000619079 WFDC3Q8IUB2 231 aa8.51□□□□□ -1.05
UPF3A-212ENST00000619079 FOXC2Q99958 501 aa8.51□□□□□ -1.05
UPF3A-212ENST00000619079 C20orf78Q9BR46 151 aa8.51□□□□□ -1.05
UPF3A-212ENST00000619079 ERG28Q9UKR5 140 aa8.51□□□□□ -1.05
UPF3A-212ENST00000619079 INSL3P51460 131 aa8.51□□□□□ -1.05
UPF3A-212ENST00000619079 CFAP161Q6P656 301 aa8.51□□□□□ -1.05
UPF3A-212ENST00000619079 DUX4L9Q6RFH8 374 aaPredicted RBP8.51□□□□□ -1.05
UPF3A-212ENST00000619079 Q71RC1 249 aaPredicted RBP8.51□□□□□ -1.05
UPF3A-212ENST00000619079 C8orf31Q8N9H6 132 aa8.51□□□□□ -1.05
UPF3A-212ENST00000619079 RASL11BQ9BPW5 248 aa8.51□□□□□ -1.05
UPF3A-212ENST00000619079 SHANK2-AS3Q9BTD1 123 aa8.51□□□□□ -1.05
UPF3A-212ENST00000619079 CDIP1Q9H305 208 aa8.51□□□□□ -1.05
UPF3A-212ENST00000619079 SPRY3O43610 288 aa8.5□□□□□ -1.05
UPF3A-212ENST00000619079 SH2D1AO60880 128 aa8.5□□□□□ -1.05
UPF3A-212ENST00000619079 RPL27AP46776 148 aaKnown RBP8.5□□□□□ -1.05
UPF3A-212ENST00000619079 FAM201AQ5SY85 155 aa8.5□□□□□ -1.05
UPF3A-212ENST00000619079 COX8CQ7Z4L0 72 aa8.5□□□□□ -1.05
UPF3A-212ENST00000619079 FAM216BQ8N7L0 139 aa8.5□□□□□ -1.05
UPF3A-212ENST00000619079 DLX4Q92988 240 aaPredicted RBP8.5□□□□□ -1.05
UPF3A-212ENST00000619079 CCL13Q99616 98 aa8.5□□□□□ -1.05
UPF3A-212ENST00000619079 FAM215AQ9Y5M1 114 aa8.5□□□□□ -1.05
UPF3A-212ENST00000619079 POLEQ07864 2286 aa8.5□□□□□ -1.05
UPF3A-212ENST00000619079 NAV3Q8IVL0 2385 aa8.5□□□□□ -1.05
UPF3A-212ENST00000619079 PLNP26678 52 aa8.5□□□□□ -1.05
UPF3A-212ENST00000619079 PDE6HQ13956 83 aa8.5□□□□□ -1.05
UPF3A-212ENST00000619079 LYRM7Q5U5X0 104 aa8.5□□□□□ -1.05
UPF3A-212ENST00000619079 CFAP126Q5VTH2 177 aa8.5□□□□□ -1.05
UPF3A-212ENST00000619079 RUSC1-AS1Q66K80 236 aa8.5□□□□□ -1.05
UPF3A-212ENST00000619079 Q6ZUT4 128 aa8.5□□□□□ -1.05
UPF3A-212ENST00000619079 TMEM158Q8WZ71 300 aa8.5□□□□□ -1.05
UPF3A-212ENST00000619079 VKORC1Q9BQB6 163 aa8.5□□□□□ -1.05
UPF3A-212ENST00000619079 AAMDCQ9H7C9 122 aa8.5□□□□□ -1.05
UPF3A-212ENST00000619079 SMKR1H3BMG3 65 aa8.49□□□□□ -1.05
UPF3A-212ENST00000619079 C16orf97H3BN30 126 aa8.49□□□□□ -1.05
UPF3A-212ENST00000619079 J3QKU1 62 aa8.49□□□□□ -1.05
UPF3A-212ENST00000619079 PLA2G2AP14555 144 aa8.49□□□□□ -1.05
UPF3A-212ENST00000619079 SPRNQ5BIV9 151 aa8.49□□□□□ -1.05
UPF3A-212ENST00000619079 LINC00311Q8N616 119 aa8.49□□□□□ -1.05
UPF3A-212ENST00000619079 C9orf106Q8NAJ2 232 aa8.49□□□□□ -1.05
UPF3A-212ENST00000619079 TMSB15BA0A087X1C1 80 aa8.49□□□□□ -1.05
UPF3A-212ENST00000619079 A6NJY4 79 aa8.49□□□□□ -1.05
UPF3A-212ENST00000619079 H3BRN7 92 aa8.49□□□□□ -1.05
UPF3A-212ENST00000619079 IL4P05112 153 aa8.49□□□□□ -1.05
UPF3A-212ENST00000619079 DEFB108BQ8NET1 73 aa8.49□□□□□ -1.05
UPF3A-212ENST00000619079 C8orf49Q96NF6 230 aa8.49□□□□□ -1.05
UPF3A-212ENST00000619079 TMEM133Q9H2Q1 129 aa8.49□□□□□ -1.05
UPF3A-212ENST00000619079 TRBV7-3A0A075B6L6 115 aa8.48□□□□□ -1.05
UPF3A-212ENST00000619079 HOXA3O43365 443 aaPredicted RBP8.48□□□□□ -1.05
UPF3A-212ENST00000619079 GLRXP35754 106 aa8.48□□□□□ -1.05
UPF3A-212ENST00000619079 SRSF2Q01130 221 aaKnown RBP8.48□□□□□ -1.05
UPF3A-212ENST00000619079 PPDPFLQ8WWR9 84 aa8.48□□□□□ -1.05
UPF3A-212ENST00000619079 RPEQ96AT9 228 aa8.48□□□□□ -1.05
UPF3A-212ENST00000619079 TMEM160Q9NX00 188 aa8.48□□□□□ -1.05
UPF3A-212ENST00000619079 MBD3L4A6NDZ8 208 aaPredicted RBP8.48□□□□□ -1.05
UPF3A-212ENST00000619079 MBD3L3A6NE82 208 aaPredicted RBP8.48□□□□□ -1.05
UPF3A-212ENST00000619079 MBD3L5A6NJ08 208 aaPredicted RBP8.48□□□□□ -1.05
UPF3A-212ENST00000619079 TNFRSF6BO95407 300 aa8.48□□□□□ -1.05
UPF3A-212ENST00000619079 TNFAIP6P98066 277 aaPredicted RBP8.48□□□□□ -1.05
UPF3A-212ENST00000619079 MSMPQ1L6U9 139 aa8.48□□□□□ -1.05
UPF3A-212ENST00000619079 TEX36Q5VZQ5 186 aa8.48□□□□□ -1.05
UPF3A-212ENST00000619079 SEM1Q6ZVN7 128 aa8.48□□□□□ -1.05
UPF3A-212ENST00000619079 Q8N8P6 123 aa8.48□□□□□ -1.05
UPF3A-212ENST00000619079 MBD3L2Q8NHZ7 208 aaPredicted RBP8.48□□□□□ -1.05
UPF3A-212ENST00000619079 MYOZ3Q8TDC0 251 aa8.48□□□□□ -1.05
UPF3A-212ENST00000619079 CNFNQ9BYD5 112 aa8.48□□□□□ -1.05
UPF3A-212ENST00000619079 TPSG1Q9NRR2 321 aa8.48□□□□□ -1.05
UPF3A-212ENST00000619079 DSCAMO60469 2012 aa8.47□□□□□ -1.05
UPF3A-212ENST00000619079 TRAV40A0A0B4J280 105 aa8.47□□□□□ -1.05
UPF3A-212ENST00000619079 IGLC6P0CF74 106 aa8.47□□□□□ -1.05
UPF3A-212ENST00000619079 GAGE5Q13069 117 aa8.47□□□□□ -1.05
UPF3A-212ENST00000619079 GAGE6Q13070 117 aa8.47□□□□□ -1.05
UPF3A-212ENST00000619079 ANAPC13Q9BS18 74 aa8.47□□□□□ -1.05
UPF3A-212ENST00000619079 COL12A1Q99715 3063 aa8.47□□□□□ -1.05
UPF3A-212ENST00000619079 IGLV3-9A0A075B6K5 115 aa8.46□□□□□ -1.05
UPF3A-212ENST00000619079 IGHV3-21A0A0B4J1V1 117 aa8.46□□□□□ -1.05
UPF3A-212ENST00000619079 A0A0G2JNJ9 132 aa8.46□□□□□ -1.05
UPF3A-212ENST00000619079 RBP4P02753 201 aa8.46□□□□□ -1.05
UPF3A-212ENST00000619079 MT-ATP8P03928 68 aa8.46□□□□□ -1.05
UPF3A-212ENST00000619079 MRGPRG-AS1Q2M3A8 158 aa8.46□□□□□ -1.05
UPF3A-212ENST00000619079 MAPKAPK5-AS1Q8N8E1 139 aa8.46□□□□□ -1.05
UPF3A-212ENST00000619079 RNF185Q96GF1 192 aa8.46□□□□□ -1.05
UPF3A-212ENST00000619079 MRPL35Q9NZE8 188 aaKnown RBP8.46□□□□□ -1.05
UPF3A-212ENST00000619079 Q9UFV3 132 aa8.46□□□□□ -1.05
UPF3A-212ENST00000619079 A0A087WX48 190 aa8.46□□□□□ -1.06
UPF3A-212ENST00000619079 TMEM262E9PQX1 116 aa8.46□□□□□ -1.06
UPF3A-212ENST00000619079 XGP55808 180 aa8.46□□□□□ -1.06
UPF3A-212ENST00000619079 RNF183Q96D59 192 aa8.46□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 54.8 ms