RNA–Protein interactions for RNA: ENST00000616053.4

TCF4-248, Transcript of transcription factor 4, humanhuman

TSL 5 BASIC

Gene TCF4, Length 8,140 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCF4-248ENST00000616053 PRR20CP86479 221 aa10.19□□□□□ -0.78
TCF4-248ENST00000616053 PRR20DP86480 221 aa10.19□□□□□ -0.78
TCF4-248ENST00000616053 PRR20BP86481 221 aa10.19□□□□□ -0.78
TCF4-248ENST00000616053 PRR20AP86496 221 aa10.19□□□□□ -0.78
TCF4-248ENST00000616053 RNASE13Q5GAN3 156 aaKnown RBP10.19□□□□□ -0.78
TCF4-248ENST00000616053 DOCK2Q92608 1830 aa10.19□□□□□ -0.78
TCF4-248ENST00000616053 KIR2DL5BA0A0G2JN68 375 aa10.19□□□□□ -0.78
TCF4-248ENST00000616053 KIR2DL5BA0A0G2JPC4 375 aa10.19□□□□□ -0.78
TCF4-248ENST00000616053 E7EQL1 145 aa10.19□□□□□ -0.78
TCF4-248ENST00000616053 GUSBP1Q15486 140 aa10.19□□□□□ -0.78
TCF4-248ENST00000616053 GGNQ86UU5 652 aa10.19□□□□□ -0.78
TCF4-248ENST00000616053 KIR2DL5AQ8N109 375 aa10.19□□□□□ -0.78
TCF4-248ENST00000616053 C11orf45Q8TAV5 145 aa10.19□□□□□ -0.78
TCF4-248ENST00000616053 SHISA3A0PJX4 238 aa10.19□□□□□ -0.78
TCF4-248ENST00000616053 PRR31Q5SQ13 230 aa10.19□□□□□ -0.78
TCF4-248ENST00000616053 C5orf24Q7Z6I8 188 aa10.19□□□□□ -0.78
TCF4-248ENST00000616053 ATP6V0E2Q8NHE4 81 aa10.19□□□□□ -0.78
TCF4-248ENST00000616053 FGFBP3Q8TAT2 258 aa10.19□□□□□ -0.78
TCF4-248ENST00000616053 PPP1R3EQ9H7J1 279 aa10.18□□□□□ -0.78
TCF4-248ENST00000616053 GAGE12HA6NDE8 117 aa10.18□□□□□ -0.78
TCF4-248ENST00000616053 ZNF837Q96EG3 531 aaPredicted RBP10.18□□□□□ -0.78
TCF4-248ENST00000616053 MESP1Q9BRJ9 268 aa10.18□□□□□ -0.78
TCF4-248ENST00000616053 IGKV1-27A0A075B6S5 117 aa10.18□□□□□ -0.78
TCF4-248ENST00000616053 G3V318 75 aa10.18□□□□□ -0.78
TCF4-248ENST00000616053 DEFB136Q30KP8 78 aa10.18□□□□□ -0.78
TCF4-248ENST00000616053 RSPO3Q9BXY4 272 aaPredicted RBP10.18□□□□□ -0.78
TCF4-248ENST00000616053 PTPRQQ9UMZ3 2332 aa10.18□□□□□ -0.78
TCF4-248ENST00000616053 A8MWP6 167 aa10.18□□□□□ -0.78
TCF4-248ENST00000616053 H0YJW9 148 aa10.18□□□□□ -0.78
TCF4-248ENST00000616053 LYPD2Q6UXB3 125 aa10.18□□□□□ -0.78
TCF4-248ENST00000616053 LRRC37A3O60309 1634 aa10.18□□□□□ -0.78
TCF4-248ENST00000616053 LAMB4A4D0S4 1761 aa10.18□□□□□ -0.78
TCF4-248ENST00000616053 C9JQL5 133 aa10.18□□□□□ -0.78
TCF4-248ENST00000616053 AMTNQ6UX39 209 aa10.18□□□□□ -0.78
TCF4-248ENST00000616053 DDX60Q8IY21 1712 aaKnown RBP10.18□□□□□ -0.78
TCF4-248ENST00000616053 COX7B2Q8TF08 81 aa10.18□□□□□ -0.78
TCF4-248ENST00000616053 USP17L23D6RBM5 183 aa10.17□□□□□ -0.78
TCF4-248ENST00000616053 CXCL2P19875 107 aa10.17□□□□□ -0.78
TCF4-248ENST00000616053 BVES-AS1Q5T3Y7 98 aa10.17□□□□□ -0.78
TCF4-248ENST00000616053 RPRMLQ8N4K4 120 aa10.17□□□□□ -0.78
TCF4-248ENST00000616053 SIGLEC8Q9NYZ4 499 aa10.17□□□□□ -0.78
TCF4-248ENST00000616053 USP54Q70EL1 1684 aa10.17□□□□□ -0.78
TCF4-248ENST00000616053 A0A1B0GTI1 187 aa10.17□□□□□ -0.78
TCF4-248ENST00000616053 GLI3P10071 1580 aa10.17□□□□□ -0.78
TCF4-248ENST00000616053 DOCK1Q14185 1865 aa10.17□□□□□ -0.78
TCF4-248ENST00000616053 A0A087WWC5 75 aa10.17□□□□□ -0.78
TCF4-248ENST00000616053 TRBV6-7A0A0A0MS04 114 aa10.17□□□□□ -0.78
TCF4-248ENST00000616053 SDHAF1A6NFY7 115 aa10.17□□□□□ -0.78
TCF4-248ENST00000616053 C16orf74Q96GX8 76 aa10.17□□□□□ -0.78
TCF4-248ENST00000616053 TBX6O95947 436 aaPredicted RBP10.17□□□□□ -0.78
TCF4-248ENST00000616053 DEFB135Q30KP9 77 aa10.17□□□□□ -0.78
TCF4-248ENST00000616053 ECM29Q5VYK3 1845 aa10.17□□□□□ -0.78
TCF4-248ENST00000616053 IGHV4-59P01825 116 aa10.17□□□□□ -0.78
TCF4-248ENST00000616053 ZC2HC1BQ5TFG8 222 aa10.17□□□□□ -0.78
TCF4-248ENST00000616053 LYPD1Q8N2G4 141 aa10.17□□□□□ -0.78
TCF4-248ENST00000616053 PRR15LQ9BU68 103 aa10.17□□□□□ -0.78
TCF4-248ENST00000616053 TM2D1Q9BX74 207 aa10.17□□□□□ -0.78
TCF4-248ENST00000616053 IGKV1-6A0A0C4DH72 117 aa10.16□□□□□ -0.78
TCF4-248ENST00000616053 ODF3L1Q8IXM7 274 aa10.16□□□□□ -0.78
TCF4-248ENST00000616053 HIGD2AQ9BW72 106 aa10.16□□□□□ -0.78
TCF4-248ENST00000616053 SRRM5B3KS81 715 aa10.16□□□□□ -0.78
TCF4-248ENST00000616053 HILS1P60008 231 aa10.16□□□□□ -0.78
TCF4-248ENST00000616053 HIGD2BQ4VC39 106 aa10.16□□□□□ -0.78
TCF4-248ENST00000616053 SERP1Q9Y6X1 66 aa10.16□□□□□ -0.78
TCF4-248ENST00000616053 GFI1Q99684 422 aa10.16□□□□□ -0.78
TCF4-248ENST00000616053 DEFB4AO15263 64 aa10.16□□□□□ -0.78
TCF4-248ENST00000616053 HIST2H2BCQ6DN03 193 aa10.16□□□□□ -0.78
TCF4-248ENST00000616053 NBASA2RRP1 2371 aa10.16□□□□□ -0.78
TCF4-248ENST00000616053 ADAMTS7Q9UKP4 1686 aa10.16□□□□□ -0.78
TCF4-248ENST00000616053 PCP2Q8IVA1 136 aa10.16□□□□□ -0.78
TCF4-248ENST00000616053 BRCA1P38398 1863 aaKnown RBP10.16□□□□□ -0.78
TCF4-248ENST00000616053 LINC00271P0C7V0 271 aa10.16□□□□□ -0.78
TCF4-248ENST00000616053 TRBV5-7A0A0A0MS05 114 aa10.15□□□□□ -0.78
TCF4-248ENST00000616053 AMN1Q8IY45 258 aa10.15□□□□□ -0.78
TCF4-248ENST00000616053 SMIM27A0A1W2PRY6 76 aa10.15□□□□□ -0.78
TCF4-248ENST00000616053 DEFB112Q30KQ8 113 aa10.15□□□□□ -0.79
TCF4-248ENST00000616053 FAM120AOSQ5T036 256 aa10.15□□□□□ -0.79
TCF4-248ENST00000616053 OCC1Q8TAD7 63 aa10.15□□□□□ -0.79
TCF4-248ENST00000616053 C2orf16Q68DN1 1984 aa10.15□□□□□ -0.79
TCF4-248ENST00000616053 SLC25A29Q8N8R3 303 aa10.15□□□□□ -0.79
TCF4-248ENST00000616053 PINLYPA6NC86 204 aa10.14□□□□□ -0.79
TCF4-248ENST00000616053 APRG1Q8IVJ8 170 aa10.14□□□□□ -0.79
TCF4-248ENST00000616053 SRP19P09132 144 aaKnown RBP10.14□□□□□ -0.79
TCF4-248ENST00000616053 MRPL53Q96EL3 112 aaKnown RBP10.14□□□□□ -0.79
TCF4-248ENST00000616053 C5orf63A6NC05 138 aa10.14□□□□□ -0.79
TCF4-248ENST00000616053 ZNF134P52741 427 aa10.14□□□□□ -0.79
TCF4-248ENST00000616053 LYPD6BQ8NI32 183 aa10.13□□□□□ -0.79
TCF4-248ENST00000616053 FGF6P10767 208 aa10.13□□□□□ -0.79
TCF4-248ENST00000616053 CRYBA4P53673 196 aa10.13□□□□□ -0.79
TCF4-248ENST00000616053 GAFA1Q96PS6 74 aa10.13□□□□□ -0.79
TCF4-248ENST00000616053 SRSF8Q9BRL6 282 aaKnown RBP10.13□□□□□ -0.79
TCF4-248ENST00000616053 TCF20Q9UGU0 1960 aaKnown RBP10.13□□□□□ -0.79
TCF4-248ENST00000616053 RIF1Q5UIP0 2472 aaKnown RBP10.13□□□□□ -0.79
TCF4-248ENST00000616053 UBE2D2P62837 147 aa10.13□□□□□ -0.79
TCF4-248ENST00000616053 Q6ZS92 163 aa10.13□□□□□ -0.79
TCF4-248ENST00000616053 WIPF2Q8TF74 440 aaPredicted RBP10.13□□□□□ -0.79
TCF4-248ENST00000616053 RETNQ9HD89 108 aa10.13□□□□□ -0.79
TCF4-248ENST00000616053 M0R2N4 97 aa10.13□□□□□ -0.79
TCF4-248ENST00000616053 NDUFC2O95298 119 aa10.13□□□□□ -0.79
TCF4-248ENST00000616053 C2orf66Q6UXQ4 117 aa10.13□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms