RNA–Protein interactions for RNA: ENST00000600868.5

UPF1-211, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-211ENST00000600868 KLF12Q9Y4X4 402 aa10.58□□□□□ -0.72
UPF1-211ENST00000600868 LINC00862A6NCI5 91 aa10.57□□□□□ -0.72
UPF1-211ENST00000600868 TMEM250H0YL14 139 aa10.57□□□□□ -0.72
UPF1-211ENST00000600868 K7EIL1 84 aa10.57□□□□□ -0.72
UPF1-211ENST00000600868 IGLV2-11P01706 119 aa10.57□□□□□ -0.72
UPF1-211ENST00000600868 PRB2P02812 416 aaPredicted RBP10.57□□□□□ -0.72
UPF1-211ENST00000600868 S100A9P06702 114 aaKnown RBP10.57□□□□□ -0.72
UPF1-211ENST00000600868 CT45A10P0DMU9 189 aa10.57□□□□□ -0.72
UPF1-211ENST00000600868 AKR1C3P42330 323 aa10.57□□□□□ -0.72
UPF1-211ENST00000600868 ERCC8Q13216 396 aa10.57□□□□□ -0.72
UPF1-211ENST00000600868 PEA15Q15121 130 aa10.57□□□□□ -0.72
UPF1-211ENST00000600868 TMEM78Q5T7P6 136 aa10.57□□□□□ -0.72
UPF1-211ENST00000600868 OR4B1Q8NGF8 309 aa10.57□□□□□ -0.72
UPF1-211ENST00000600868 ODF3Q96PU9 254 aa10.57□□□□□ -0.72
UPF1-211ENST00000600868 ZNF492Q9P255 531 aa10.57□□□□□ -0.72
UPF1-211ENST00000600868 AGRNO00468 2067 aa10.57□□□□□ -0.72
UPF1-211ENST00000600868 LOC102724200A0A096LPH7 203 aaPredicted RBP10.56□□□□□ -0.72
UPF1-211ENST00000600868 TRAV8-1A0A0A6YYK1 113 aa10.56□□□□□ -0.72
UPF1-211ENST00000600868 TRBV7-9A0A0J9YWB2 115 aa10.56□□□□□ -0.72
UPF1-211ENST00000600868 RBMY1BA6NDE4 496 aaKnown RBP10.56□□□□□ -0.72
UPF1-211ENST00000600868 RBMY1EA6NEQ0 496 aaKnown RBP10.56□□□□□ -0.72
UPF1-211ENST00000600868 RBMY1DP0C7P1 496 aaKnown RBP10.56□□□□□ -0.72
UPF1-211ENST00000600868 ZNF138P52744 262 aa10.56□□□□□ -0.72
UPF1-211ENST00000600868 FLI1Q01543 452 aaPredicted RBP10.56□□□□□ -0.72
UPF1-211ENST00000600868 TMEM183BQ1AE95 376 aa10.56□□□□□ -0.72
UPF1-211ENST00000600868 AMTNQ6UX39 209 aa10.56□□□□□ -0.72
UPF1-211ENST00000600868 LINC00322Q6ZN03 302 aaPredicted RBP10.56□□□□□ -0.72
UPF1-211ENST00000600868 FMC1Q96HJ9 113 aa10.56□□□□□ -0.72
UPF1-211ENST00000600868 LINC00479Q96M42 142 aa10.56□□□□□ -0.72
UPF1-211ENST00000600868 LENEPQ9Y5L5 61 aa10.56□□□□□ -0.72
UPF1-211ENST00000600868 TRAV34A0A0B4J273 112 aa10.55□□□□□ -0.72
UPF1-211ENST00000600868 TRBV6-1A0A0K0K1D8 114 aa10.55□□□□□ -0.72
UPF1-211ENST00000600868 IGKV3-20P01619 116 aa10.55□□□□□ -0.72
UPF1-211ENST00000600868 SRP19P09132 144 aaKnown RBP10.55□□□□□ -0.72
UPF1-211ENST00000600868 RPL35AP18077 110 aaKnown RBP10.55□□□□□ -0.72
UPF1-211ENST00000600868 SRSF3P84103 164 aaKnown RBP10.55□□□□□ -0.72
UPF1-211ENST00000600868 MORN3Q6PF18 240 aaPredicted RBP10.55□□□□□ -0.72
UPF1-211ENST00000600868 FAM19A4Q96LR4 140 aa10.55□□□□□ -0.72
UPF1-211ENST00000600868 PSG8Q9UQ74 426 aa10.55□□□□□ -0.72
UPF1-211ENST00000600868 TSPOP30536 169 aa10.54□□□□□ -0.72
UPF1-211ENST00000600868 TAS2R60P59551 318 aa10.54□□□□□ -0.72
UPF1-211ENST00000600868 NUTF2P61970 127 aaKnown RBP10.54□□□□□ -0.72
UPF1-211ENST00000600868 UBE2G1P62253 170 aa10.54□□□□□ -0.72
UPF1-211ENST00000600868 Q8TAT8 98 aa10.54□□□□□ -0.72
UPF1-211ENST00000600868 SGK494Q96LW2 274 aa10.54□□□□□ -0.72
UPF1-211ENST00000600868 KIR2DL5BA0A0G2JN68 375 aa10.53□□□□□ -0.72
UPF1-211ENST00000600868 KIR2DL5BA0A0G2JPC4 375 aa10.53□□□□□ -0.72
UPF1-211ENST00000600868 C9JQL5 133 aa10.53□□□□□ -0.72
UPF1-211ENST00000600868 CRISP2P16562 243 aa10.53□□□□□ -0.72
UPF1-211ENST00000600868 LEPP41159 167 aa10.53□□□□□ -0.72
UPF1-211ENST00000600868 RPL35P42766 123 aaKnown RBP10.53□□□□□ -0.72
UPF1-211ENST00000600868 UQCC3Q6UW78 93 aa10.53□□□□□ -0.72
UPF1-211ENST00000600868 PRNTQ86SH4 94 aa10.53□□□□□ -0.72
UPF1-211ENST00000600868 KIR2DL5AQ8N109 375 aa10.53□□□□□ -0.72
UPF1-211ENST00000600868 KIR2DL5BQ8NHK3 375 aa10.53□□□□□ -0.72
UPF1-211ENST00000600868 CSTL1Q9H114 145 aa10.53□□□□□ -0.72
UPF1-211ENST00000600868 SLC35B3Q9H1N7 401 aa10.53□□□□□ -0.72
UPF1-211ENST00000600868 LTAP01374 205 aa10.52□□□□□ -0.73
UPF1-211ENST00000600868 AMBPP02760 352 aa10.52□□□□□ -0.73
UPF1-211ENST00000600868 FRMD6-AS1P0C7T7 363 aa10.52□□□□□ -0.73
UPF1-211ENST00000600868 CDKN1BP46527 198 aa10.52□□□□□ -0.73
UPF1-211ENST00000600868 APOC4P55056 127 aa10.52□□□□□ -0.73
UPF1-211ENST00000600868 SAPCD1Q5SSQ6 148 aa10.52□□□□□ -0.73
UPF1-211ENST00000600868 Q86TA4 180 aa10.52□□□□□ -0.73
UPF1-211ENST00000600868 COMMD7Q86VX2 200 aa10.52□□□□□ -0.73
UPF1-211ENST00000600868 EIF4E3Q8N5X7 224 aaKnown RBP10.52□□□□□ -0.73
UPF1-211ENST00000600868 TVP23CQ96ET8 276 aa10.52□□□□□ -0.73
UPF1-211ENST00000600868 NDFIP1Q9BT67 221 aa10.52□□□□□ -0.73
UPF1-211ENST00000600868 DERL1Q9BUN8 251 aa10.52□□□□□ -0.73
UPF1-211ENST00000600868 TREM1Q9NP99 234 aa10.52□□□□□ -0.73
UPF1-211ENST00000600868 ZFP30Q9Y2G7 519 aa10.52□□□□□ -0.73
UPF1-211ENST00000600868 KLLNB2CW77 178 aa10.51□□□□□ -0.73
UPF1-211ENST00000600868 UBE2CO00762 179 aa10.51□□□□□ -0.73
UPF1-211ENST00000600868 GIG44P09565 113 aaPredicted RBP10.51□□□□□ -0.73
UPF1-211ENST00000600868 SPINK13Q1W4C9 94 aa10.51□□□□□ -0.73
UPF1-211ENST00000600868 ZFAND2AQ8N6M9 145 aa10.51□□□□□ -0.73
UPF1-211ENST00000600868 C1QTNF4Q9BXJ3 329 aa10.51□□□□□ -0.73
UPF1-211ENST00000600868 PARLQ9H300 379 aa10.51□□□□□ -0.73
UPF1-211ENST00000600868 M0R2Z0 102 aa10.5□□□□□ -0.73
UPF1-211ENST00000600868 CEBPGP53567 150 aa10.5□□□□□ -0.73
UPF1-211ENST00000600868 FXYD7P58549 80 aa10.5□□□□□ -0.73
UPF1-211ENST00000600868 DEFB121Q5J5C9 76 aa10.5□□□□□ -0.73
UPF1-211ENST00000600868 COX8CQ7Z4L0 72 aa10.5□□□□□ -0.73
UPF1-211ENST00000600868 BAGE2Q86Y30 109 aa10.5□□□□□ -0.73
UPF1-211ENST00000600868 TMEM183AQ8IXX5 376 aa10.5□□□□□ -0.73
UPF1-211ENST00000600868 MRAPQ8TCY5 172 aa10.5□□□□□ -0.73
UPF1-211ENST00000600868 IGF2BP2-AS1Q96M15 143 aa10.5□□□□□ -0.73
UPF1-211ENST00000600868 ASCL2Q99929 193 aa10.5□□□□□ -0.73
UPF1-211ENST00000600868 C9JCJ5 164 aa10.49□□□□□ -0.73
UPF1-211ENST00000600868 CRXO43186 299 aaPredicted RBP10.49□□□□□ -0.73
UPF1-211ENST00000600868 CA1P00915 261 aaPredicted RBP10.49□□□□□ -0.73
UPF1-211ENST00000600868 GPX1P07203 203 aa10.49□□□□□ -0.73
UPF1-211ENST00000600868 DEFA6Q01524 100 aa10.49□□□□□ -0.73
UPF1-211ENST00000600868 ZNF674Q2M3X9 581 aa10.49□□□□□ -0.73
UPF1-211ENST00000600868 FAM74A3Q4VXF1 159 aa10.49□□□□□ -0.73
UPF1-211ENST00000600868 CENPWQ5EE01 88 aa10.49□□□□□ -0.73
UPF1-211ENST00000600868 SMIM12Q96EX1 92 aa10.49□□□□□ -0.73
UPF1-211ENST00000600868 C8orf49Q96NF6 230 aa10.49□□□□□ -0.73
UPF1-211ENST00000600868 XCL2Q9UBD3 114 aa10.49□□□□□ -0.73
UPF1-211ENST00000600868 TRBV20OR9-2A0A075B6H5 130 aa10.48□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 1001.6 ms