RNA–Protein interactions for RNA: ENST00000597172.5

TRIM28-208, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 577 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-208ENST00000597172 PSMG4Q5JS54 123 aa6.98□□□□□ -1.29
TRIM28-208ENST00000597172 EIF4E3Q8N5X7 224 aaKnown RBP6.98□□□□□ -1.29
TRIM28-208ENST00000597172 ARL6IP6Q8N6S5 226 aa6.98□□□□□ -1.29
TRIM28-208ENST00000597172 C5orf17Q8NAS9 161 aa6.98□□□□□ -1.29
TRIM28-208ENST00000597172 RPUSD4Q96CM3 377 aaKnown RBP6.98□□□□□ -1.29
TRIM28-208ENST00000597172 SMDT1Q9H4I9 107 aa6.98□□□□□ -1.29
TRIM28-208ENST00000597172 MAP6D1Q9H9H5 199 aa6.98□□□□□ -1.29
TRIM28-208ENST00000597172 DMBT1Q9UGM3 2413 aaPredicted RBP6.98□□□□□ -1.29
TRIM28-208ENST00000597172 IGKV2-40A0A087WW87 121 aaPredicted RBP6.97□□□□□ -1.29
TRIM28-208ENST00000597172 F6UZH7 168 aa6.97□□□□□ -1.29
TRIM28-208ENST00000597172 PEX7O00628 323 aa6.97□□□□□ -1.29
TRIM28-208ENST00000597172 PDE6DO43924 150 aa6.97□□□□□ -1.29
TRIM28-208ENST00000597172 IGKV2D-40P01614 121 aaPredicted RBP6.97□□□□□ -1.29
TRIM28-208ENST00000597172 IGLV2-11P01706 119 aa6.97□□□□□ -1.29
TRIM28-208ENST00000597172 ZNF705DP0CH99 300 aaPredicted RBP6.97□□□□□ -1.29
TRIM28-208ENST00000597172 ZNF705BP0CI00 300 aaPredicted RBP6.97□□□□□ -1.29
TRIM28-208ENST00000597172 CSN1S1P47710 185 aa6.97□□□□□ -1.29
TRIM28-208ENST00000597172 GDF5OSQ5U4N7 250 aa6.97□□□□□ -1.29
TRIM28-208ENST00000597172 APRG1Q8IVJ8 170 aa6.97□□□□□ -1.29
TRIM28-208ENST00000597172 Q8N1Y9 231 aa6.97□□□□□ -1.29
TRIM28-208ENST00000597172 ZNF738Q8NE65 137 aa6.97□□□□□ -1.29
TRIM28-208ENST00000597172 CMTM2Q8TAZ6 248 aa6.97□□□□□ -1.29
TRIM28-208ENST00000597172 C2CD4CQ8TF44 421 aa6.97□□□□□ -1.29
TRIM28-208ENST00000597172 HIST1H2BAQ96A08 127 aa6.97□□□□□ -1.29
TRIM28-208ENST00000597172 C11orf52Q96A22 123 aa6.97□□□□□ -1.29
TRIM28-208ENST00000597172 PRR25Q96S07 402 aa6.97□□□□□ -1.29
TRIM28-208ENST00000597172 VGLL1Q99990 258 aa6.97□□□□□ -1.29
TRIM28-208ENST00000597172 DERL1Q9BUN8 251 aa6.97□□□□□ -1.29
TRIM28-208ENST00000597172 ZMAT4Q9H898 229 aa6.97□□□□□ -1.29
TRIM28-208ENST00000597172 EDA2RQ9HAV5 297 aa6.97□□□□□ -1.29
TRIM28-208ENST00000597172 TREM1Q9NP99 234 aa6.97□□□□□ -1.29
TRIM28-208ENST00000597172 TRAV34A0A0B4J273 112 aa6.96□□□□□ -1.3
TRIM28-208ENST00000597172 KNCNA6PVL3 124 aa6.96□□□□□ -1.3
TRIM28-208ENST00000597172 TMEM250H0YL14 139 aa6.96□□□□□ -1.3
TRIM28-208ENST00000597172 ERCC8Q13216 396 aa6.96□□□□□ -1.3
TRIM28-208ENST00000597172 UQCC3Q6UW78 93 aa6.96□□□□□ -1.3
TRIM28-208ENST00000597172 GOLT1AQ6ZVE7 132 aa6.96□□□□□ -1.3
TRIM28-208ENST00000597172 CYB561D1Q8N8Q1 229 aa6.96□□□□□ -1.3
TRIM28-208ENST00000597172 OR8A1Q8NGG7 326 aa6.96□□□□□ -1.3
TRIM28-208ENST00000597172 SGK494Q96LW2 274 aa6.96□□□□□ -1.3
TRIM28-208ENST00000597172 FAM110AQ9BQ89 295 aa6.96□□□□□ -1.3
TRIM28-208ENST00000597172 TCEAL7Q9BRU2 100 aa6.96□□□□□ -1.3
TRIM28-208ENST00000597172 ATG101Q9BSB4 218 aa6.96□□□□□ -1.3
TRIM28-208ENST00000597172 KRTAP4-5Q9BYR2 181 aa6.96□□□□□ -1.3
TRIM28-208ENST00000597172 AGPAT4-IT1Q9H0P7 198 aa6.96□□□□□ -1.3
TRIM28-208ENST00000597172 SLC35B3Q9H1N7 401 aa6.96□□□□□ -1.3
TRIM28-208ENST00000597172 SAV1Q9H4B6 383 aaPredicted RBP6.96□□□□□ -1.3
TRIM28-208ENST00000597172 RPH3ALQ9UNE2 315 aa6.96□□□□□ -1.3
TRIM28-208ENST00000597172 KLF12Q9Y4X4 402 aa6.96□□□□□ -1.3
TRIM28-208ENST00000597172 TRAV8-1A0A0A6YYK1 113 aa6.95□□□□□ -1.3
TRIM28-208ENST00000597172 A0A0J9YX75 114 aa6.95□□□□□ -1.3
TRIM28-208ENST00000597172 RBAKDNA6NC62 111 aa6.95□□□□□ -1.3
TRIM28-208ENST00000597172 OR11H12B2RN74 326 aa6.95□□□□□ -1.3
TRIM28-208ENST00000597172 CMC4P56277 68 aaPredicted RBP6.95□□□□□ -1.3
TRIM28-208ENST00000597172 C9orf47Q6ZRZ4 202 aa6.95□□□□□ -1.3
TRIM28-208ENST00000597172 WFDC10AQ9H1F0 79 aa6.95□□□□□ -1.3
TRIM28-208ENST00000597172 DNAH11Q96DT5 4516 aa6.94□□□□□ -1.3
TRIM28-208ENST00000597172 TMEM218A2RU14 115 aa6.94□□□□□ -1.3
TRIM28-208ENST00000597172 NPIPB6E9PJ23 425 aa6.94□□□□□ -1.3
TRIM28-208ENST00000597172 H3BMM0 161 aa6.94□□□□□ -1.3
TRIM28-208ENST00000597172 CT45A10P0DMU9 189 aa6.94□□□□□ -1.3
TRIM28-208ENST00000597172 RPL35P42766 123 aaKnown RBP6.94□□□□□ -1.3
TRIM28-208ENST00000597172 CEBPGP53567 150 aa6.94□□□□□ -1.3
TRIM28-208ENST00000597172 NDUFA5Q16718 116 aa6.94□□□□□ -1.3
TRIM28-208ENST00000597172 TMEM183BQ1AE95 376 aa6.94□□□□□ -1.3
TRIM28-208ENST00000597172 FOXI2Q6ZQN5 318 aa6.94□□□□□ -1.3
TRIM28-208ENST00000597172 DEFB125Q8N687 156 aa6.94□□□□□ -1.3
TRIM28-208ENST00000597172 TVP23CQ96ET8 276 aa6.94□□□□□ -1.3
TRIM28-208ENST00000597172 PPP1R14DQ9NXH3 145 aa6.94□□□□□ -1.3
TRIM28-208ENST00000597172 PSG8Q9UQ74 426 aa6.94□□□□□ -1.3
TRIM28-208ENST00000597172 DYNC1H1Q14204 4646 aaKnown RBP6.94□□□□□ -1.3
TRIM28-208ENST00000597172 PKHD1P08F94 4074 aa6.94□□□□□ -1.3
TRIM28-208ENST00000597172 TRBV20OR9-2A0A075B6H5 130 aa6.93□□□□□ -1.3
TRIM28-208ENST00000597172 TRBV6-1A0A0K0K1D8 114 aa6.93□□□□□ -1.3
TRIM28-208ENST00000597172 SERTM2A0A1B0GWG4 89 aa6.93□□□□□ -1.3
TRIM28-208ENST00000597172 A8MTW9 85 aa6.93□□□□□ -1.3
TRIM28-208ENST00000597172 IGLV2-8P01709 118 aa6.93□□□□□ -1.3
TRIM28-208ENST00000597172 SFTA3P0C7M3 94 aa6.93□□□□□ -1.3
TRIM28-208ENST00000597172 HLA-DRB4P13762 266 aa6.93□□□□□ -1.3
TRIM28-208ENST00000597172 AKR1C3P42330 323 aa6.93□□□□□ -1.3
TRIM28-208ENST00000597172 CNN1P51911 297 aaKnown RBP6.93□□□□□ -1.3
TRIM28-208ENST00000597172 TAS2R60P59551 318 aa6.93□□□□□ -1.3
TRIM28-208ENST00000597172 FLI1Q01543 452 aaPredicted RBP6.93□□□□□ -1.3
TRIM28-208ENST00000597172 HIST1H1AQ02539 215 aaPredicted RBP6.93□□□□□ -1.3
TRIM28-208ENST00000597172 ACTL10Q5JWF8 245 aa6.93□□□□□ -1.3
TRIM28-208ENST00000597172 EBLN2Q6P2I7 272 aa6.93□□□□□ -1.3
TRIM28-208ENST00000597172 AMTNQ6UX39 209 aa6.93□□□□□ -1.3
TRIM28-208ENST00000597172 TMEM75Q8N9X5 138 aa6.93□□□□□ -1.3
TRIM28-208ENST00000597172 OR10J6PQ8NGY7 276 aa6.93□□□□□ -1.3
TRIM28-208ENST00000597172 FAM19A4Q96LR4 140 aa6.93□□□□□ -1.3
TRIM28-208ENST00000597172 IGF2BP2-AS1Q96M15 143 aa6.93□□□□□ -1.3
TRIM28-208ENST00000597172 LINC00477Q96M19 166 aa6.93□□□□□ -1.3
TRIM28-208ENST00000597172 PARLQ9H300 379 aa6.93□□□□□ -1.3
TRIM28-208ENST00000597172 ZNF492Q9P255 531 aa6.93□□□□□ -1.3
TRIM28-208ENST00000597172 HLA-DRB4X5D2U9 266 aa6.93□□□□□ -1.3
TRIM28-208ENST00000597172 K7EQM0 130 aa6.92□□□□□ -1.3
TRIM28-208ENST00000597172 DUSP14O95147 198 aaKnown RBP6.92□□□□□ -1.3
TRIM28-208ENST00000597172 LTAP01374 205 aa6.92□□□□□ -1.3
TRIM28-208ENST00000597172 IGKV3-20P01619 116 aa6.92□□□□□ -1.3
TRIM28-208ENST00000597172 S100A9P06702 114 aaKnown RBP6.92□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms