RNA–Protein interactions for RNA: ENST00000590181.5

LIG3-212, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,156 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-212ENST00000590181 SERF2P84101 59 aa7.45□□□□□ -1.22
LIG3-212ENST00000590181 DAZ2Q13117 558 aaKnown RBP7.45□□□□□ -1.22
LIG3-212ENST00000590181 ACOT6Q3I5F7 207 aaPredicted RBP7.45□□□□□ -1.22
LIG3-212ENST00000590181 ANXA2RQ3ZCQ2 193 aa7.45□□□□□ -1.22
LIG3-212ENST00000590181 LINC00336Q6ZUF6 198 aa7.45□□□□□ -1.22
LIG3-212ENST00000590181 RNASE8Q8TDE3 154 aaKnown RBP7.45□□□□□ -1.22
LIG3-212ENST00000590181 TMED6Q8WW62 240 aa7.45□□□□□ -1.22
LIG3-212ENST00000590181 ZNF503Q96F45 646 aa7.45□□□□□ -1.22
LIG3-212ENST00000590181 FAM167A-AS1Q96KT0 104 aa7.45□□□□□ -1.22
LIG3-212ENST00000590181 SLC25A2Q9BXI2 301 aa7.45□□□□□ -1.22
LIG3-212ENST00000590181 TRAV12-2A0A075B6T6 113 aa7.44□□□□□ -1.22
LIG3-212ENST00000590181 A0A1B0GVY2 172 aa7.44□□□□□ -1.22
LIG3-212ENST00000590181 A0A1W2PPV4 95 aa7.44□□□□□ -1.22
LIG3-212ENST00000590181 C7orf71A4D174 169 aa7.44□□□□□ -1.22
LIG3-212ENST00000590181 KLLNB2CW77 178 aa7.44□□□□□ -1.22
LIG3-212ENST00000590181 OR7C2O60412 319 aa7.44□□□□□ -1.22
LIG3-212ENST00000590181 CT45A10P0DMU9 189 aa7.44□□□□□ -1.22
LIG3-212ENST00000590181 FAM19A4Q96LR4 140 aa7.44□□□□□ -1.22
LIG3-212ENST00000590181 C18orf15Q96N68 181 aa7.44□□□□□ -1.22
LIG3-212ENST00000590181 MBD2Q9UBB5 411 aa7.44□□□□□ -1.22
LIG3-212ENST00000590181 HSPG2P98160 4391 aa7.43□□□□□ -1.22
LIG3-212ENST00000590181 SERTM2A0A1B0GWG4 89 aa7.43□□□□□ -1.22
LIG3-212ENST00000590181 PLAC8L1A1L4L8 177 aa7.43□□□□□ -1.22
LIG3-212ENST00000590181 GPX1P07203 203 aa7.43□□□□□ -1.22
LIG3-212ENST00000590181 GIPP09681 153 aaPredicted RBP7.43□□□□□ -1.22
LIG3-212ENST00000590181 ICAM4Q14773 271 aa7.43□□□□□ -1.22
LIG3-212ENST00000590181 LGALS9BQ3B8N2 356 aa7.43□□□□□ -1.22
LIG3-212ENST00000590181 FFAR4Q5NUL3 377 aa7.43□□□□□ -1.22
LIG3-212ENST00000590181 IBA57Q5T440 356 aaKnown RBP7.43□□□□□ -1.22
LIG3-212ENST00000590181 GFI1BQ5VTD9 330 aa7.43□□□□□ -1.22
LIG3-212ENST00000590181 INO80EQ8NBZ0 244 aaPredicted RBP7.43□□□□□ -1.22
LIG3-212ENST00000590181 OR2G3Q8NGZ4 309 aa7.43□□□□□ -1.22
LIG3-212ENST00000590181 BLNKQ8WV28 456 aa7.43□□□□□ -1.22
LIG3-212ENST00000590181 FXYD5Q96DB9 178 aa7.43□□□□□ -1.22
LIG3-212ENST00000590181 AQP10Q96PS8 301 aa7.43□□□□□ -1.22
LIG3-212ENST00000590181 PSMG3Q9BT73 122 aaPredicted RBP7.43□□□□□ -1.22
LIG3-212ENST00000590181 ZNF492Q9P255 531 aa7.43□□□□□ -1.22
LIG3-212ENST00000590181 ALG5Q9Y673 324 aa7.43□□□□□ -1.22
LIG3-212ENST00000590181 FBLL1A6NHQ2 334 aaKnown RBP7.42□□□□□ -1.22
LIG3-212ENST00000590181 PRAC2D3DTV9 90 aa7.42□□□□□ -1.22
LIG3-212ENST00000590181 ZNF324O75467 553 aaPredicted RBP7.42□□□□□ -1.22
LIG3-212ENST00000590181 DEFB130BP0DP73 79 aa7.42□□□□□ -1.22
LIG3-212ENST00000590181 DEFB130AP0DP74 79 aa7.42□□□□□ -1.22
LIG3-212ENST00000590181 PYYP10082 97 aa7.42□□□□□ -1.22
LIG3-212ENST00000590181 AZU1P20160 251 aa7.42□□□□□ -1.22
LIG3-212ENST00000590181 ZNF138P52744 262 aa7.42□□□□□ -1.22
LIG3-212ENST00000590181 SLAQ13239 276 aa7.42□□□□□ -1.22
LIG3-212ENST00000590181 SOHLH1Q5JUK2 328 aa7.42□□□□□ -1.22
LIG3-212ENST00000590181 ZNF767PQ75MW2 155 aa7.42□□□□□ -1.22
LIG3-212ENST00000590181 MIR17HGQ75NE6 70 aa7.42□□□□□ -1.22
LIG3-212ENST00000590181 EIF4E3Q8N5X7 224 aaKnown RBP7.42□□□□□ -1.22
LIG3-212ENST00000590181 LINC00612Q8N6U2 182 aa7.42□□□□□ -1.22
LIG3-212ENST00000590181 GNPNAT1Q96EK6 184 aaPredicted RBP7.42□□□□□ -1.22
LIG3-212ENST00000590181 AGPAT4-IT1Q9H0P7 198 aa7.42□□□□□ -1.22
LIG3-212ENST00000590181 OTORQ9NRC9 128 aa7.42□□□□□ -1.22
LIG3-212ENST00000590181 TRAV12-3A0A0B4J271 114 aa7.41□□□□□ -1.22
LIG3-212ENST00000590181 H3BTX0 84 aa7.41□□□□□ -1.22
LIG3-212ENST00000590181 HTN1P15515 57 aa7.41□□□□□ -1.22
LIG3-212ENST00000590181 CCL18P55774 89 aa7.41□□□□□ -1.22
LIG3-212ENST00000590181 UBE2L3P68036 154 aaKnown RBP7.41□□□□□ -1.22
LIG3-212ENST00000590181 GCSAMLQ5JQS6 135 aa7.41□□□□□ -1.22
LIG3-212ENST00000590181 UBE2DNLQ8IWF7 75 aa7.41□□□□□ -1.22
LIG3-212ENST00000590181 CMTM2Q8TAZ6 248 aa7.41□□□□□ -1.22
LIG3-212ENST00000590181 NOP10Q9NPE3 64 aaKnown RBP7.41□□□□□ -1.22
LIG3-212ENST00000590181 TP53TG3Q9ULZ0 132 aa7.41□□□□□ -1.22
LIG3-212ENST00000590181 TNFSF18Q9UNG2 199 aa7.41□□□□□ -1.22
LIG3-212ENST00000590181 BORCS7-ASMTA0A0B4J1R7 106 aa7.4□□□□□ -1.22
LIG3-212ENST00000590181 PRSS29PA6NIE9 313 aa7.4□□□□□ -1.22
LIG3-212ENST00000590181 F5H768 121 aa7.4□□□□□ -1.22
LIG3-212ENST00000590181 K7EQM0 130 aa7.4□□□□□ -1.22
LIG3-212ENST00000590181 M0R3E3 92 aa7.4□□□□□ -1.22
LIG3-212ENST00000590181 TAAR5O14804 337 aa7.4□□□□□ -1.22
LIG3-212ENST00000590181 SNRPCP09234 159 aaKnown RBP7.4□□□□□ -1.22
LIG3-212ENST00000590181 HTN3P15516 51 aa7.4□□□□□ -1.22
LIG3-212ENST00000590181 BTF3P20290 206 aaKnown RBP7.4□□□□□ -1.22
LIG3-212ENST00000590181 RANP62826 216 aaKnown RBP7.4□□□□□ -1.22
LIG3-212ENST00000590181 RGS21Q2M5E4 152 aa7.4□□□□□ -1.22
LIG3-212ENST00000590181 TMEM88Q6PEY1 159 aa7.4□□□□□ -1.22
LIG3-212ENST00000590181 EXOC3-AS1Q8N2X6 119 aa7.4□□□□□ -1.22
LIG3-212ENST00000590181 ATG101Q9BSB4 218 aa7.4□□□□□ -1.22
LIG3-212ENST00000590181 Q9H3A6 140 aa7.4□□□□□ -1.22
LIG3-212ENST00000590181 DIRC3C9JPN6 131 aa7.39□□□□□ -1.23
LIG3-212ENST00000590181 RGS13O14921 159 aa7.39□□□□□ -1.23
LIG3-212ENST00000590181 OR10J4P0C629 311 aa7.39□□□□□ -1.23
LIG3-212ENST00000590181 RNASE4P34096 147 aaKnown RBP7.39□□□□□ -1.23
LIG3-212ENST00000590181 FAM122CQ6P4D5 195 aa7.39□□□□□ -1.23
LIG3-212ENST00000590181 OR10G4Q8NGN3 311 aa7.39□□□□□ -1.23
LIG3-212ENST00000590181 OR10G9Q8NGN4 311 aa7.39□□□□□ -1.23
LIG3-212ENST00000590181 OR10G7Q8NGN6 311 aa7.39□□□□□ -1.23
LIG3-212ENST00000590181 SPXQ9BT56 116 aa7.39□□□□□ -1.23
LIG3-212ENST00000590181 NKX6-2Q9C056 277 aaPredicted RBP7.39□□□□□ -1.23
LIG3-212ENST00000590181 TMEM167BQ9NRX6 74 aa7.39□□□□□ -1.23
LIG3-212ENST00000590181 IGHV1OR15-1A0A075B7D0 117 aa7.38□□□□□ -1.23
LIG3-212ENST00000590181 TCL1AP56279 114 aa7.38□□□□□ -1.23
LIG3-212ENST00000590181 ERCC8Q13216 396 aa7.38□□□□□ -1.23
LIG3-212ENST00000590181 FCN2Q15485 313 aa7.38□□□□□ -1.23
LIG3-212ENST00000590181 Q6AWC8 147 aa7.38□□□□□ -1.23
LIG3-212ENST00000590181 ZFAND2AQ8N6M9 145 aa7.38□□□□□ -1.23
LIG3-212ENST00000590181 SUN5Q8TC36 379 aa7.38□□□□□ -1.23
LIG3-212ENST00000590181 ST6GAL2Q96JF0 529 aa7.38□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms