RNA–Protein interactions for RNA: ENST00000588109.5

LIG3-210, Transcript of DNA ligase 3, humanhuman

TSL 4

Gene LIG3, Length 592 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-210ENST00000588109 PGPA6NDG6 321 aa3.97□□□□□ -1.77
LIG3-210ENST00000588109 FAM74A7A6NL05 159 aa3.97□□□□□ -1.77
LIG3-210ENST00000588109 F6UZH7 168 aa3.97□□□□□ -1.77
LIG3-210ENST00000588109 K7EQG2 157 aa3.97□□□□□ -1.77
LIG3-210ENST00000588109 ZNF253O75346 499 aa3.97□□□□□ -1.77
LIG3-210ENST00000588109 NDUFB4O95168 129 aa3.97□□□□□ -1.77
LIG3-210ENST00000588109 SLC25A5P05141 298 aaKnown RBP3.97□□□□□ -1.77
LIG3-210ENST00000588109 ZNF688P0C7X2 276 aa3.97□□□□□ -1.77
LIG3-210ENST00000588109 HLA-DMBP28068 263 aa3.97□□□□□ -1.77
LIG3-210ENST00000588109 ATP5G3P48201 142 aa3.97□□□□□ -1.77
LIG3-210ENST00000588109 CEBPGP53567 150 aa3.97□□□□□ -1.77
LIG3-210ENST00000588109 MEF2BQ02080 365 aaPredicted RBP3.97□□□□□ -1.77
LIG3-210ENST00000588109 PEA15Q15121 130 aa3.97□□□□□ -1.77
LIG3-210ENST00000588109 PSG3Q16557 428 aa3.97□□□□□ -1.77
LIG3-210ENST00000588109 KRTAP21-3Q3LHN1 58 aa3.97□□□□□ -1.77
LIG3-210ENST00000588109 PSMG4Q5JS54 123 aa3.97□□□□□ -1.77
LIG3-210ENST00000588109 GTSCR1Q86UQ5 136 aa3.97□□□□□ -1.77
LIG3-210ENST00000588109 COMMD7Q86VX2 200 aa3.97□□□□□ -1.77
LIG3-210ENST00000588109 LYPD1Q8N2G4 141 aa3.97□□□□□ -1.77
LIG3-210ENST00000588109 RNF182Q8N6D2 247 aa3.97□□□□□ -1.77
LIG3-210ENST00000588109 ZNF738Q8NE65 137 aa3.97□□□□□ -1.77
LIG3-210ENST00000588109 SUN5Q8TC36 379 aa3.97□□□□□ -1.77
LIG3-210ENST00000588109 RXFP4Q8TDU9 374 aa3.97□□□□□ -1.77
LIG3-210ENST00000588109 DCANP1Q8TF63 244 aa3.97□□□□□ -1.77
LIG3-210ENST00000588109 RARRES2Q99969 163 aa3.97□□□□□ -1.77
LIG3-210ENST00000588109 ZNF331Q9NQX6 463 aaPredicted RBP3.97□□□□□ -1.77
LIG3-210ENST00000588109 CLEC5AQ9NY25 188 aa3.97□□□□□ -1.77
LIG3-210ENST00000588109 PRELID1Q9Y255 219 aa3.97□□□□□ -1.77
LIG3-210ENST00000588109 ARL2-SNX15V9GYD0 113 aa3.97□□□□□ -1.77
LIG3-210ENST00000588109 COL6A5A8TX70 2615 aa3.97□□□□□ -1.77
LIG3-210ENST00000588109 STAB1Q9NY15 2570 aa3.96□□□□□ -1.78
LIG3-210ENST00000588109 TRAV8-2A0A0B4J237 113 aa3.96□□□□□ -1.78
LIG3-210ENST00000588109 RAB19A4D1S5 217 aa3.96□□□□□ -1.78
LIG3-210ENST00000588109 LINC00862A6NCI5 91 aa3.96□□□□□ -1.78
LIG3-210ENST00000588109 ZNF705FA8MVS1 300 aaPredicted RBP3.96□□□□□ -1.78
LIG3-210ENST00000588109 OR11H12B2RN74 326 aa3.96□□□□□ -1.78
LIG3-210ENST00000588109 GGTLC3B5MD39 225 aa3.96□□□□□ -1.78
LIG3-210ENST00000588109 K7EQM0 130 aa3.96□□□□□ -1.78
LIG3-210ENST00000588109 M0R3E3 92 aa3.96□□□□□ -1.78
LIG3-210ENST00000588109 SOCS3O14543 225 aa3.96□□□□□ -1.78
LIG3-210ENST00000588109 PDE6DO43924 150 aa3.96□□□□□ -1.78
LIG3-210ENST00000588109 PRB4P10163 310 aaPredicted RBP3.96□□□□□ -1.78
LIG3-210ENST00000588109 CMC4P56277 68 aaPredicted RBP3.96□□□□□ -1.78
LIG3-210ENST00000588109 DEFB131AP59861 70 aa3.96□□□□□ -1.78
LIG3-210ENST00000588109 CD81P60033 236 aa3.96□□□□□ -1.78
LIG3-210ENST00000588109 GNG5P63218 68 aa3.96□□□□□ -1.78
LIG3-210ENST00000588109 ZNF506Q5JVG8 444 aa3.96□□□□□ -1.78
LIG3-210ENST00000588109 FAM24BQ8N5W8 94 aa3.96□□□□□ -1.78
LIG3-210ENST00000588109 C5orf17Q8NAS9 161 aa3.96□□□□□ -1.78
LIG3-210ENST00000588109 RPUSD4Q96CM3 377 aaKnown RBP3.96□□□□□ -1.78
LIG3-210ENST00000588109 TXNDC17Q9BRA2 123 aa3.96□□□□□ -1.78
LIG3-210ENST00000588109 TCEAL7Q9BRU2 100 aa3.96□□□□□ -1.78
LIG3-210ENST00000588109 TREM1Q9NP99 234 aa3.96□□□□□ -1.78
LIG3-210ENST00000588109 MED9Q9NWA0 146 aa3.96□□□□□ -1.78
LIG3-210ENST00000588109 PEX7O00628 323 aa3.95□□□□□ -1.78
LIG3-210ENST00000588109 TCRAP04437 139 aa3.95□□□□□ -1.78
LIG3-210ENST00000588109 AKR1C3P42330 323 aa3.95□□□□□ -1.78
LIG3-210ENST00000588109 CNN1P51911 297 aaKnown RBP3.95□□□□□ -1.78
LIG3-210ENST00000588109 UBE2G1P62253 170 aa3.95□□□□□ -1.78
LIG3-210ENST00000588109 HIST1H1AQ02539 215 aaPredicted RBP3.95□□□□□ -1.78
LIG3-210ENST00000588109 NDUFA5Q16718 116 aa3.95□□□□□ -1.78
LIG3-210ENST00000588109 EBLN2Q6P2I7 272 aa3.95□□□□□ -1.78
LIG3-210ENST00000588109 UQCC3Q6UW78 93 aa3.95□□□□□ -1.78
LIG3-210ENST00000588109 GOLT1AQ6ZVE7 132 aa3.95□□□□□ -1.78
LIG3-210ENST00000588109 CYB561D1Q8N8Q1 229 aa3.95□□□□□ -1.78
LIG3-210ENST00000588109 OR10J6PQ8NGY7 276 aa3.95□□□□□ -1.78
LIG3-210ENST00000588109 HIST1H2BAQ96A08 127 aa3.95□□□□□ -1.78
LIG3-210ENST00000588109 MRPL53Q96EL3 112 aaKnown RBP3.95□□□□□ -1.78
LIG3-210ENST00000588109 ATG101Q9BSB4 218 aa3.95□□□□□ -1.78
LIG3-210ENST00000588109 SMDT1Q9H4I9 107 aa3.95□□□□□ -1.78
LIG3-210ENST00000588109 MAP6D1Q9H9H5 199 aa3.95□□□□□ -1.78
LIG3-210ENST00000588109 PPP1R14DQ9NXH3 145 aa3.95□□□□□ -1.78
LIG3-210ENST00000588109 EPDR1Q9UM22 224 aa3.95□□□□□ -1.78
LIG3-210ENST00000588109 ZNF256Q9Y2P7 627 aaPredicted RBP3.95□□□□□ -1.78
LIG3-210ENST00000588109 ANK2Q01484 3957 aa3.94□□□□□ -1.78
LIG3-210ENST00000588109 IGKV2-40A0A087WW87 121 aaPredicted RBP3.94□□□□□ -1.78
LIG3-210ENST00000588109 SERTM2A0A1B0GWG4 89 aa3.94□□□□□ -1.78
LIG3-210ENST00000588109 PRAC2D3DTV9 90 aa3.94□□□□□ -1.78
LIG3-210ENST00000588109 F6UB75 175 aa3.94□□□□□ -1.78
LIG3-210ENST00000588109 G3V4G9 280 aa3.94□□□□□ -1.78
LIG3-210ENST00000588109 TMEM250H0YL14 139 aa3.94□□□□□ -1.78
LIG3-210ENST00000588109 IGKV2D-40P01614 121 aaPredicted RBP3.94□□□□□ -1.78
LIG3-210ENST00000588109 SRP19P09132 144 aaKnown RBP3.94□□□□□ -1.78
LIG3-210ENST00000588109 CD7P09564 240 aa3.94□□□□□ -1.78
LIG3-210ENST00000588109 ZNF705DP0CH99 300 aaPredicted RBP3.94□□□□□ -1.78
LIG3-210ENST00000588109 ZNF705BP0CI00 300 aaPredicted RBP3.94□□□□□ -1.78
LIG3-210ENST00000588109 DEFB1P60022 68 aa3.94□□□□□ -1.78
LIG3-210ENST00000588109 KRTAP15-1Q3LI76 137 aa3.94□□□□□ -1.78
LIG3-210ENST00000588109 ODF3L2Q3SX64 289 aa3.94□□□□□ -1.78
LIG3-210ENST00000588109 ACTL10Q5JWF8 245 aa3.94□□□□□ -1.78
LIG3-210ENST00000588109 TMEM78Q5T7P6 136 aa3.94□□□□□ -1.78
LIG3-210ENST00000588109 FOXI2Q6ZQN5 318 aa3.94□□□□□ -1.78
LIG3-210ENST00000588109 PRNTQ86SH4 94 aa3.94□□□□□ -1.78
LIG3-210ENST00000588109 APRG1Q8IVJ8 170 aa3.94□□□□□ -1.78
LIG3-210ENST00000588109 OR4B1Q8NGF8 309 aa3.94□□□□□ -1.78
LIG3-210ENST00000588109 OR8A1Q8NGG7 326 aa3.94□□□□□ -1.78
LIG3-210ENST00000588109 SGK494Q96LW2 274 aa3.94□□□□□ -1.78
LIG3-210ENST00000588109 NDFIP1Q9BT67 221 aa3.94□□□□□ -1.78
LIG3-210ENST00000588109 SLC35B3Q9H1N7 401 aa3.94□□□□□ -1.78
LIG3-210ENST00000588109 TRAV8-1A0A0A6YYK1 113 aa3.93□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms