RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 CLEC5AQ9NY25 188 aa18.67■□□□□ 0.58
SHMT1-207ENST00000580002 OR4C46A6NHA9 309 aa18.66■□□□□ 0.58
SHMT1-207ENST00000580002 K7EN84 100 aa18.66■□□□□ 0.58
SHMT1-207ENST00000580002 RPL23P62829 140 aaKnown RBP18.66■□□□□ 0.58
SHMT1-207ENST00000580002 HIST1H1AQ02539 215 aaPredicted RBP18.66■□□□□ 0.58
SHMT1-207ENST00000580002 BAGE2Q86Y30 109 aa18.66■□□□□ 0.58
SHMT1-207ENST00000580002 FMC1Q96HJ9 113 aa18.66■□□□□ 0.58
SHMT1-207ENST00000580002 GNG4P50150 75 aa18.65■□□□□ 0.58
SHMT1-207ENST00000580002 TAS2R60P59551 318 aa18.65■□□□□ 0.58
SHMT1-207ENST00000580002 OR5I1Q13606 314 aa18.65■□□□□ 0.58
SHMT1-207ENST00000580002 ARL6IP6Q8N6S5 226 aa18.65■□□□□ 0.58
SHMT1-207ENST00000580002 C8orf49Q96NF6 230 aa18.65■□□□□ 0.58
SHMT1-207ENST00000580002 NIPSNAP3BQ9BS92 247 aa18.65■□□□□ 0.58
SHMT1-207ENST00000580002 NAT8Q9UHE5 227 aa18.65■□□□□ 0.58
SHMT1-207ENST00000580002 FAM74A3Q4VXF1 159 aa18.65■□□□□ 0.58
SHMT1-207ENST00000580002 OXLD1Q5BKU9 147 aa18.65■□□□□ 0.58
SHMT1-207ENST00000580002 WFDC10AQ9H1F0 79 aa18.65■□□□□ 0.58
SHMT1-207ENST00000580002 LTAP01374 205 aa18.64■□□□□ 0.57
SHMT1-207ENST00000580002 BEAN1Q3B7T3 259 aa18.64■□□□□ 0.57
SHMT1-207ENST00000580002 SAMD13Q5VXD3 122 aa18.64■□□□□ 0.57
SHMT1-207ENST00000580002 LINC01551Q86U37 167 aa18.64■□□□□ 0.57
SHMT1-207ENST00000580002 OR2K2Q8NGT1 345 aa18.64■□□□□ 0.57
SHMT1-207ENST00000580002 C9JCJ5 164 aa18.63■□□□□ 0.57
SHMT1-207ENST00000580002 K7EQM0 130 aa18.63■□□□□ 0.57
SHMT1-207ENST00000580002 IGKV3-20P01619 116 aa18.63■□□□□ 0.57
SHMT1-207ENST00000580002 CT45A10P0DMU9 189 aa18.63■□□□□ 0.57
SHMT1-207ENST00000580002 ADIRFQ15847 76 aa18.63■□□□□ 0.57
SHMT1-207ENST00000580002 RBAKDNA6NC62 111 aa18.63■□□□□ 0.57
SHMT1-207ENST00000580002 INSL3P51460 131 aa18.63■□□□□ 0.57
SHMT1-207ENST00000580002 C9orf47Q6ZRZ4 202 aa18.63■□□□□ 0.57
SHMT1-207ENST00000580002 A0A0J9YX75 114 aa18.62■□□□□ 0.57
SHMT1-207ENST00000580002 OR10J6PQ8NGY7 276 aa18.62■□□□□ 0.57
SHMT1-207ENST00000580002 MLST8Q9BVC4 326 aa18.62■□□□□ 0.57
SHMT1-207ENST00000580002 SERTM2A0A1B0GWG4 89 aa18.61■□□□□ 0.57
SHMT1-207ENST00000580002 NPIPB6E9PJ23 425 aa18.61■□□□□ 0.57
SHMT1-207ENST00000580002 M0R036 132 aa18.61■□□□□ 0.57
SHMT1-207ENST00000580002 MGST1P10620 155 aaKnown RBP18.61■□□□□ 0.57
SHMT1-207ENST00000580002 ACTL10Q5JWF8 245 aa18.61■□□□□ 0.57
SHMT1-207ENST00000580002 LINC00322Q6ZN03 302 aaPredicted RBP18.61■□□□□ 0.57
SHMT1-207ENST00000580002 C19orf73Q9NVV2 129 aa18.61■□□□□ 0.57
SHMT1-207ENST00000580002 KIR3DS1Q14943 382 aa18.6■□□□□ 0.57
SHMT1-207ENST00000580002 CLRN3Q8NCR9 226 aa18.6■□□□□ 0.57
SHMT1-207ENST00000580002 PRR25Q96S07 402 aa18.6■□□□□ 0.57
SHMT1-207ENST00000580002 MCRIP2Q9BUT9 160 aaKnown RBP18.6■□□□□ 0.57
SHMT1-207ENST00000580002 SAV1Q9H4B6 383 aaPredicted RBP18.6■□□□□ 0.57
SHMT1-207ENST00000580002 ZNF492Q9P255 531 aa18.6■□□□□ 0.57
SHMT1-207ENST00000580002 TRBV6-1A0A0K0K1D8 114 aa18.6■□□□□ 0.57
SHMT1-207ENST00000580002 J3KRW8 73 aa18.59■□□□□ 0.57
SHMT1-207ENST00000580002 S100A9P06702 114 aaKnown RBP18.59■□□□□ 0.57
SHMT1-207ENST00000580002 ZNF138P52744 262 aa18.59■□□□□ 0.57
SHMT1-207ENST00000580002 TMEM78Q5T7P6 136 aa18.59■□□□□ 0.57
SHMT1-207ENST00000580002 Q6ZQT7 251 aa18.59■□□□□ 0.57
SHMT1-207ENST00000580002 ZC2HC1AQ96GY0 325 aa18.59■□□□□ 0.57
SHMT1-207ENST00000580002 SCO1O75880 301 aa18.58■□□□□ 0.57
SHMT1-207ENST00000580002 OR4B1Q8NGF8 309 aa18.58■□□□□ 0.57
SHMT1-207ENST00000580002 CRIP1P50238 77 aa18.58■□□□□ 0.56
SHMT1-207ENST00000580002 ZNF80P51504 273 aaPredicted RBP18.58■□□□□ 0.56
SHMT1-207ENST00000580002 PRR27Q6MZM9 219 aa18.58■□□□□ 0.56
SHMT1-207ENST00000580002 FOXI2Q6ZQN5 318 aa18.58■□□□□ 0.56
SHMT1-207ENST00000580002 RBMY1BA6NDE4 496 aaKnown RBP18.57■□□□□ 0.56
SHMT1-207ENST00000580002 RBMY1EA6NEQ0 496 aaKnown RBP18.57■□□□□ 0.56
SHMT1-207ENST00000580002 RBMY1DP0C7P1 496 aaKnown RBP18.57■□□□□ 0.56
SHMT1-207ENST00000580002 PRR9Q5T870 116 aa18.57■□□□□ 0.56
SHMT1-207ENST00000580002 EBLN2Q6P2I7 272 aa18.57■□□□□ 0.56
SHMT1-207ENST00000580002 TMEM183AQ8IXX5 376 aa18.57■□□□□ 0.56
SHMT1-207ENST00000580002 SVBPQ8N300 66 aa18.57■□□□□ 0.56
SHMT1-207ENST00000580002 ISOC2Q96AB3 205 aa18.57■□□□□ 0.56
SHMT1-207ENST00000580002 OR11H12B2RN74 326 aa18.56■□□□□ 0.56
SHMT1-207ENST00000580002 GCGP01275 180 aa18.56■□□□□ 0.56
SHMT1-207ENST00000580002 LINC00477Q96M19 166 aa18.56■□□□□ 0.56
SHMT1-207ENST00000580002 RNASE7Q9H1E1 156 aaKnown RBP18.56■□□□□ 0.56
SHMT1-207ENST00000580002 ZFP30Q9Y2G7 519 aa18.56■□□□□ 0.56
SHMT1-207ENST00000580002 H3BMM0 161 aa18.55■□□□□ 0.56
SHMT1-207ENST00000580002 RIPPLY3P57055 190 aa18.55■□□□□ 0.56
SHMT1-207ENST00000580002 PRR31Q5SQ13 230 aa18.55■□□□□ 0.56
SHMT1-207ENST00000580002 LY96Q9Y6Y9 160 aa18.55■□□□□ 0.56
SHMT1-207ENST00000580002 C7orf77A4D0Y5 90 aa18.55■□□□□ 0.56
SHMT1-207ENST00000580002 WIPF1O43516 503 aa18.55■□□□□ 0.56
SHMT1-207ENST00000580002 FXYD7P58549 80 aa18.55■□□□□ 0.56
SHMT1-207ENST00000580002 FAM19A4Q96LR4 140 aa18.55■□□□□ 0.56
SHMT1-207ENST00000580002 HLA-DRB4P13762 266 aa18.54■□□□□ 0.56
SHMT1-207ENST00000580002 HLA-DRB4X5D2U9 266 aa18.54■□□□□ 0.56
SHMT1-207ENST00000580002 KRTAP10-11P60412 298 aa18.53■□□□□ 0.56
SHMT1-207ENST00000580002 AMTNQ6UX39 209 aa18.53■□□□□ 0.56
SHMT1-207ENST00000580002 DEFB125Q8N687 156 aa18.53■□□□□ 0.56
SHMT1-207ENST00000580002 ZFAND2AQ8N6M9 145 aa18.53■□□□□ 0.56
SHMT1-207ENST00000580002 DNHD1Q96M86 4753 aa18.53■□□□□ 0.56
SHMT1-207ENST00000580002 G3V4G9 280 aa18.53■□□□□ 0.56
SHMT1-207ENST00000580002 PNRC1Q12796 327 aaPredicted RBP18.53■□□□□ 0.56
SHMT1-207ENST00000580002 RNF212Q495C1 297 aa18.53■□□□□ 0.56
SHMT1-207ENST00000580002 PPP1R14DQ9NXH3 145 aa18.53■□□□□ 0.56
SHMT1-207ENST00000580002 M0R2Z0 102 aa18.52■□□□□ 0.55
SHMT1-207ENST00000580002 SNAPINO95295 136 aa18.52■□□□□ 0.55
SHMT1-207ENST00000580002 SAPCD1Q5SSQ6 148 aa18.52■□□□□ 0.55
SHMT1-207ENST00000580002 RPS10P5Q9NQ39 176 aa18.52■□□□□ 0.55
SHMT1-207ENST00000580002 TRAV12-2A0A075B6T6 113 aa18.5■□□□□ 0.55
SHMT1-207ENST00000580002 FBLL1A6NHQ2 334 aaKnown RBP18.5■□□□□ 0.55
SHMT1-207ENST00000580002 SPINK13Q1W4C9 94 aa18.5■□□□□ 0.55
SHMT1-207ENST00000580002 Q8N1Y9 231 aa18.5■□□□□ 0.55
SHMT1-207ENST00000580002 NUDT10Q8NFP7 164 aa18.5■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms