RNA–Protein interactions for RNA: ENST00000577751.5

SS18-208, Transcript of SS18, nBAF chromatin remodeling complex subunit, human

TSL 4

Gene SS18, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SS18-208	ENST00000577751	TAS2R60	P59551	318 aa		13.81	□□□□□ -0.2
SS18-208	ENST00000577751	ST6GAL2	Q96JF0	529 aa		13.81	□□□□□ -0.2
SS18-208	ENST00000577751	LYST	Q99698	3801 aa		13.81	□□□□□ -0.2
SS18-208	ENST00000577751	ARPC5L	Q9BPX5	153 aa		13.81	□□□□□ -0.2
SS18-208	ENST00000577751	ACTR3C	Q9C0K3	210 aa	Predicted RBP	13.81	□□□□□ -0.2
SS18-208	ENST00000577751	OTOR	Q9NRC9	128 aa		13.81	□□□□□ -0.2
SS18-208	ENST00000577751	ZNF492	Q9P255	531 aa		13.81	□□□□□ -0.2
SS18-208	ENST00000577751	YTHDF2	Q9Y5A9	579 aa	Known RBP	13.81	□□□□□ -0.2
SS18-208	ENST00000577751	DYNC2H1	Q8NCM8	4307 aa	Known RBP	13.81	□□□□□ -0.2
SS18-208	ENST00000577751	TEX48	A0A1B0GUV7	120 aa		13.8	□□□□□ -0.2
SS18-208	ENST00000577751	PLAC8L1	A1L4L8	177 aa		13.8	□□□□□ -0.2
SS18-208	ENST00000577751	KLLN	B2CW77	178 aa		13.8	□□□□□ -0.2
SS18-208	ENST00000577751		H7BYZ3	331 aa		13.8	□□□□□ -0.2
SS18-208	ENST00000577751	SLC25A5	P05141	298 aa	Known RBP	13.8	□□□□□ -0.2
SS18-208	ENST00000577751	AZU1	P20160	251 aa		13.8	□□□□□ -0.2
SS18-208	ENST00000577751	CSN1S1	P47710	185 aa		13.8	□□□□□ -0.2
SS18-208	ENST00000577751	TMEM78	Q5T7P6	136 aa		13.8	□□□□□ -0.2
SS18-208	ENST00000577751	FAM222A	Q5U5X8	452 aa		13.8	□□□□□ -0.2
SS18-208	ENST00000577751	ARL6IP6	Q8N6S5	226 aa		13.8	□□□□□ -0.2
SS18-208	ENST00000577751	RXFP4	Q8TDU9	374 aa		13.8	□□□□□ -0.2
SS18-208	ENST00000577751		A0A0D9SG52	128 aa		13.79	□□□□□ -0.2
SS18-208	ENST00000577751	PGP	A6NDG6	321 aa		13.79	□□□□□ -0.2
SS18-208	ENST00000577751	DIRC3	C9JPN6	131 aa		13.79	□□□□□ -0.2
SS18-208	ENST00000577751	NMB	P08949	121 aa		13.79	□□□□□ -0.2
SS18-208	ENST00000577751	GCHFR	P30047	84 aa		13.79	□□□□□ -0.2
SS18-208	ENST00000577751	ZNF726P1	Q15940	193 aa		13.79	□□□□□ -0.2
SS18-208	ENST00000577751	ZNF767P	Q75MW2	155 aa		13.79	□□□□□ -0.2
SS18-208	ENST00000577751	SSX7	Q7RTT5	188 aa		13.79	□□□□□ -0.2
SS18-208	ENST00000577751	C2CD4C	Q8TF44	421 aa		13.79	□□□□□ -0.2
SS18-208	ENST00000577751	TRAV10	A0A0B4J240	114 aa		13.78	□□□□□ -0.2
SS18-208	ENST00000577751	TRBV7-9	A0A0J9YWB2	115 aa		13.78	□□□□□ -0.2
SS18-208	ENST00000577751		J3KRW8	73 aa		13.78	□□□□□ -0.2
SS18-208	ENST00000577751	CXorf1	O96002	111 aa		13.78	□□□□□ -0.2
SS18-208	ENST00000577751	FAM74A1	Q5RGS3	127 aa		13.78	□□□□□ -0.2
SS18-208	ENST00000577751	PLEC	Q15149	4684 aa	Known RBP	13.78	□□□□□ -0.2
SS18-208	ENST00000577751	TRAV12-3	A0A0B4J271	114 aa		13.77	□□□□□ -0.21
SS18-208	ENST00000577751	C7orf71	A4D174	169 aa		13.77	□□□□□ -0.21
SS18-208	ENST00000577751	ZNF324	O75467	553 aa	Predicted RBP	13.77	□□□□□ -0.21
SS18-208	ENST00000577751	ZNF138	P52744	262 aa		13.77	□□□□□ -0.21
SS18-208	ENST00000577751	RYR3	Q15413	4870 aa		13.77	□□□□□ -0.21
SS18-208	ENST00000577751	TCTE3	Q8IZS6	198 aa		13.77	□□□□□ -0.21
SS18-208	ENST00000577751	ZFAND2A	Q8N6M9	145 aa		13.77	□□□□□ -0.21
SS18-208	ENST00000577751	RNASE8	Q8TDE3	154 aa	Known RBP	13.77	□□□□□ -0.21
SS18-208	ENST00000577751	HYLS1	Q96M11	299 aa		13.77	□□□□□ -0.21
SS18-208	ENST00000577751	NIPSNAP3B	Q9BS92	247 aa		13.77	□□□□□ -0.21
SS18-208	ENST00000577751	CTXND1	A0A1B0GTU2	59 aa		13.76	□□□□□ -0.21
SS18-208	ENST00000577751	CD300C	Q08708	224 aa		13.76	□□□□□ -0.21
SS18-208	ENST00000577751	AKR1C8P	Q5T2L2	129 aa		13.76	□□□□□ -0.21
SS18-208	ENST00000577751	ZNF493	Q6ZR52	646 aa		13.76	□□□□□ -0.21
SS18-208	ENST00000577751	CMTM2	Q8TAZ6	248 aa		13.76	□□□□□ -0.21
SS18-208	ENST00000577751	C16orf74	Q96GX8	76 aa		13.76	□□□□□ -0.21
SS18-208	ENST00000577751	TMEM167B	Q9NRX6	74 aa		13.76	□□□□□ -0.21
SS18-208	ENST00000577751	PLA2G2E	Q9NZK7	142 aa		13.76	□□□□□ -0.21
SS18-208	ENST00000577751	DEFB131B	A0A096LNP1	70 aa		13.75	□□□□□ -0.21
SS18-208	ENST00000577751	LYRM9	A8MSI8	78 aa		13.75	□□□□□ -0.21
SS18-208	ENST00000577751	BCL2L11	O43521	198 aa		13.75	□□□□□ -0.21
SS18-208	ENST00000577751	HTN1	P15515	57 aa		13.75	□□□□□ -0.21
SS18-208	ENST00000577751	TCTA	P57738	103 aa		13.75	□□□□□ -0.21
SS18-208	ENST00000577751	BTN1A1	Q13410	526 aa		13.75	□□□□□ -0.21
SS18-208	ENST00000577751	TMEM263	Q8WUH6	116 aa	Known RBP	13.75	□□□□□ -0.21
SS18-208	ENST00000577751	TMED6	Q8WW62	240 aa		13.75	□□□□□ -0.21
SS18-208	ENST00000577751	PYGO2	Q9BRQ0	406 aa		13.75	□□□□□ -0.21
SS18-208	ENST00000577751	SACS	Q9NZJ4	4579 aa		13.75	□□□□□ -0.21
SS18-208	ENST00000577751	KANTR	A0A1W2PQU2	76 aa		13.74	□□□□□ -0.21
SS18-208	ENST00000577751	GPX1	P07203	203 aa		13.74	□□□□□ -0.21
SS18-208	ENST00000577751	SEC11B	P0C7V7	166 aa		13.74	□□□□□ -0.21
SS18-208	ENST00000577751	PRR9	Q5T870	116 aa		13.74	□□□□□ -0.21
SS18-208	ENST00000577751		Q8TAT8	98 aa		13.74	□□□□□ -0.21
SS18-208	ENST00000577751	LINC00476	Q8WZB0	136 aa		13.74	□□□□□ -0.21
SS18-208	ENST00000577751	LINC00467	Q9BRT7	94 aa		13.74	□□□□□ -0.21
SS18-208	ENST00000577751	LENEP	Q9Y5L5	61 aa		13.74	□□□□□ -0.21
SS18-208	ENST00000577751	IGLL5	B9A064	214 aa		13.73	□□□□□ -0.21
SS18-208	ENST00000577751	RNASE4	P34096	147 aa	Known RBP	13.73	□□□□□ -0.21
SS18-208	ENST00000577751	TMUB2	Q71RG4	321 aa		13.73	□□□□□ -0.21
SS18-208	ENST00000577751	ZNF471	Q9BX82	626 aa	Predicted RBP	13.73	□□□□□ -0.21
SS18-208	ENST00000577751	GOLT1A	Q6ZVE7	132 aa		13.72	□□□□□ -0.21
SS18-208	ENST00000577751	CCDC28A	Q8IWP9	274 aa		13.72	□□□□□ -0.21
SS18-208	ENST00000577751	APLN	Q9ULZ1	77 aa		13.72	□□□□□ -0.21
SS18-208	ENST00000577751	TIMM8B	Q9Y5J9	83 aa	Predicted RBP	13.72	□□□□□ -0.21
SS18-208	ENST00000577751		A0A1W2PRE2	83 aa		13.71	□□□□□ -0.21
SS18-208	ENST00000577751	GGTLC3	B5MD39	225 aa		13.71	□□□□□ -0.21
SS18-208	ENST00000577751	DAD1	P61803	113 aa		13.71	□□□□□ -0.21
SS18-208	ENST00000577751	SUMO1	P63165	101 aa	Known RBP	13.71	□□□□□ -0.21
SS18-208	ENST00000577751	GNG5	P63218	68 aa		13.71	□□□□□ -0.21
SS18-208	ENST00000577751	C5orf17	Q8NAS9	161 aa		13.71	□□□□□ -0.21
SS18-208	ENST00000577751	TMPRSS5	Q9H3S3	457 aa		13.71	□□□□□ -0.21
SS18-208	ENST00000577751	RPH3AL	Q9UNE2	315 aa		13.71	□□□□□ -0.21
SS18-208	ENST00000577751	IGHV4-4	A0A075B6R2	117 aa		13.7	□□□□□ -0.22
SS18-208	ENST00000577751	SERTM2	A0A1B0GWG4	89 aa		13.7	□□□□□ -0.22
SS18-208	ENST00000577751	C1QB	P02746	253 aa		13.7	□□□□□ -0.22
SS18-208	ENST00000577751	TCRA	P04437	139 aa		13.7	□□□□□ -0.22
SS18-208	ENST00000577751	EIF5A	P63241	154 aa	Known RBP	13.7	□□□□□ -0.22
SS18-208	ENST00000577751	LGALSL	Q3ZCW2	172 aa	Predicted RBP	13.7	□□□□□ -0.22
SS18-208	ENST00000577751		Q6ZQT7	251 aa		13.7	□□□□□ -0.22
SS18-208	ENST00000577751	UMAD1	C9J7I0	102 aa		13.69	□□□□□ -0.22
SS18-208	ENST00000577751	PFDN1	O60925	122 aa		13.69	□□□□□ -0.22
SS18-208	ENST00000577751	FGF8	P55075	233 aa	Predicted RBP	13.69	□□□□□ -0.22
SS18-208	ENST00000577751	ANXA2R	Q3ZCQ2	193 aa		13.69	□□□□□ -0.22
SS18-208	ENST00000577751	IQCF2	Q8IXL9	164 aa		13.69	□□□□□ -0.22
SS18-208	ENST00000577751	NOP10	Q9NPE3	64 aa	Known RBP	13.69	□□□□□ -0.22

Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms