RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 S100A8P05109 93 aa6.07□□□□□ -1.44
VPS39-213ENST00000570062 HOXD3P31249 432 aaPredicted RBP6.07□□□□□ -1.44
VPS39-213ENST00000570062 RPS10P46783 165 aaKnown RBP6.07□□□□□ -1.44
VPS39-213ENST00000570062 GNG5P63218 68 aa6.07□□□□□ -1.44
VPS39-213ENST00000570062 SMUG1Q53HV7 270 aa6.07□□□□□ -1.44
VPS39-213ENST00000570062 WDR73Q6P4I2 378 aa6.07□□□□□ -1.44
VPS39-213ENST00000570062 C9orf47Q6ZRZ4 202 aa6.07□□□□□ -1.44
VPS39-213ENST00000570062 PRNTQ86SH4 94 aa6.07□□□□□ -1.44
VPS39-213ENST00000570062 GBGT1Q8N5D6 347 aa6.07□□□□□ -1.44
VPS39-213ENST00000570062 LINC01006Q8NI28 216 aa6.07□□□□□ -1.44
VPS39-213ENST00000570062 WIPF2Q8TF74 440 aaPredicted RBP6.07□□□□□ -1.44
VPS39-213ENST00000570062 TSKUQ8WUA8 353 aa6.07□□□□□ -1.44
VPS39-213ENST00000570062 C17orf77Q96MU5 243 aa6.07□□□□□ -1.44
VPS39-213ENST00000570062 YPEL4Q96NS1 127 aa6.07□□□□□ -1.44
VPS39-213ENST00000570062 DUX5Q96PT3 197 aa6.07□□□□□ -1.44
VPS39-213ENST00000570062 ASCL2Q99929 193 aa6.07□□□□□ -1.44
VPS39-213ENST00000570062 ESM1Q9NQ30 184 aa6.07□□□□□ -1.44
VPS39-213ENST00000570062 SIGLEC8Q9NYZ4 499 aa6.07□□□□□ -1.44
VPS39-213ENST00000570062 NAT8BQ9UHF3 227 aa6.07□□□□□ -1.44
VPS39-213ENST00000570062 RPH3ALQ9UNE2 315 aa6.07□□□□□ -1.44
VPS39-213ENST00000570062 VPS13CQ709C8 3753 aa6.07□□□□□ -1.44
VPS39-213ENST00000570062 ATRQ13535 2644 aa6.07□□□□□ -1.44
VPS39-213ENST00000570062 PLXNB1O43157 2135 aa6.07□□□□□ -1.44
VPS39-213ENST00000570062 TRAV34A0A0B4J273 112 aa6.06□□□□□ -1.44
VPS39-213ENST00000570062 TRAV25A0A0B4J276 109 aa6.06□□□□□ -1.44
VPS39-213ENST00000570062 TMEM238LA0A1B0GVL6 79 aa6.06□□□□□ -1.44
VPS39-213ENST00000570062 A0A1B0GW15 77 aa6.06□□□□□ -1.44
VPS39-213ENST00000570062 SMIM27A0A1W2PRY6 76 aa6.06□□□□□ -1.44
VPS39-213ENST00000570062 FABP5P3A8MUU1 101 aa6.06□□□□□ -1.44
VPS39-213ENST00000570062 H3BTX0 84 aa6.06□□□□□ -1.44
VPS39-213ENST00000570062 SLC17A3O00476 420 aa6.06□□□□□ -1.44
VPS39-213ENST00000570062 ZNF207O43670 478 aaKnown RBP6.06□□□□□ -1.44
VPS39-213ENST00000570062 IGLV2-11P01706 119 aa6.06□□□□□ -1.44
VPS39-213ENST00000570062 APOHP02749 345 aaPredicted RBP6.06□□□□□ -1.44
VPS39-213ENST00000570062 CBLN1P23435 193 aa6.06□□□□□ -1.44
VPS39-213ENST00000570062 ZNF138P52744 262 aa6.06□□□□□ -1.44
VPS39-213ENST00000570062 TM4SF20Q53R12 229 aa6.06□□□□□ -1.44
VPS39-213ENST00000570062 KHDC1LQ5JSQ8 128 aa6.06□□□□□ -1.44
VPS39-213ENST00000570062 FAM162BQ5T6X4 162 aa6.06□□□□□ -1.44
VPS39-213ENST00000570062 TCF24Q7RTU0 167 aa6.06□□□□□ -1.44
VPS39-213ENST00000570062 ATP5L2Q7Z4Y8 100 aa6.06□□□□□ -1.44
VPS39-213ENST00000570062 NUDT10Q8NFP7 164 aa6.06□□□□□ -1.44
VPS39-213ENST00000570062 OR11H1Q8NG94 326 aa6.06□□□□□ -1.44
VPS39-213ENST00000570062 OR9G4Q8NGQ1 327 aa6.06□□□□□ -1.44
VPS39-213ENST00000570062 NUDT11Q96G61 164 aa6.06□□□□□ -1.44
VPS39-213ENST00000570062 LINC00479Q96M42 142 aa6.06□□□□□ -1.44
VPS39-213ENST00000570062 RPP21Q9H633 154 aaKnown RBP6.06□□□□□ -1.44
VPS39-213ENST00000570062 URGCP-MRPS24S4R325 110 aa6.06□□□□□ -1.44
VPS39-213ENST00000570062 V9GYV3 84 aa6.06□□□□□ -1.44
VPS39-213ENST00000570062 ABCA1O95477 2261 aa6.06□□□□□ -1.44
VPS39-213ENST00000570062 IGHV4OR15-8A0A075B7B6 117 aa6.05□□□□□ -1.44
VPS39-213ENST00000570062 IGHV3OR16-8A0A075B7F1 116 aa6.05□□□□□ -1.44
VPS39-213ENST00000570062 A0A087WW49 117 aa6.05□□□□□ -1.44
VPS39-213ENST00000570062 IGHV3-66A0A0C4DH42 116 aa6.05□□□□□ -1.44
VPS39-213ENST00000570062 TMEM213A2RRL7 107 aa6.05□□□□□ -1.44
VPS39-213ENST00000570062 C19orf71A6NCJ1 209 aa6.05□□□□□ -1.44
VPS39-213ENST00000570062 PGPEP1LA6NFU8 196 aa6.05□□□□□ -1.44
VPS39-213ENST00000570062 C2orf70A6NJV1 201 aa6.05□□□□□ -1.44
VPS39-213ENST00000570062 NPIPB6E9PJ23 425 aa6.05□□□□□ -1.44
VPS39-213ENST00000570062 M0R3E3 92 aa6.05□□□□□ -1.44
VPS39-213ENST00000570062 DUSP14O95147 198 aaKnown RBP6.05□□□□□ -1.44
VPS39-213ENST00000570062 S100A6P06703 90 aa6.05□□□□□ -1.44
VPS39-213ENST00000570062 SNRPCP09234 159 aaKnown RBP6.05□□□□□ -1.44
VPS39-213ENST00000570062 FOXA3P55318 350 aaPredicted RBP6.05□□□□□ -1.44
VPS39-213ENST00000570062 SYNJ2BPP57105 145 aa6.05□□□□□ -1.44
VPS39-213ENST00000570062 OR5I1Q13606 314 aa6.05□□□□□ -1.44
VPS39-213ENST00000570062 LCNL1Q6ZST4 164 aa6.05□□□□□ -1.44
VPS39-213ENST00000570062 ZNF738Q8NE65 137 aa6.05□□□□□ -1.44
VPS39-213ENST00000570062 KLHL30-AS1Q8NEE0 82 aa6.05□□□□□ -1.44
VPS39-213ENST00000570062 BORCS7Q96B45 105 aa6.05□□□□□ -1.44
VPS39-213ENST00000570062 PRR25Q96S07 402 aa6.05□□□□□ -1.44
VPS39-213ENST00000570062 TRAV8-2A0A0B4J237 113 aa6.04□□□□□ -1.44
VPS39-213ENST00000570062 A0A1W2PPQ1 181 aa6.04□□□□□ -1.44
VPS39-213ENST00000570062 IZUMO1RA6ND01 250 aa6.04□□□□□ -1.44
VPS39-213ENST00000570062 SOCS3O14543 225 aa6.04□□□□□ -1.44
VPS39-213ENST00000570062 PROK1P58294 105 aa6.04□□□□□ -1.44
VPS39-213ENST00000570062 HIST1H1AQ02539 215 aaPredicted RBP6.04□□□□□ -1.44
VPS39-213ENST00000570062 FHL3Q13643 280 aa6.04□□□□□ -1.44
VPS39-213ENST00000570062 PRR27Q6MZM9 219 aa6.04□□□□□ -1.44
VPS39-213ENST00000570062 EBLN2Q6P2I7 272 aa6.04□□□□□ -1.44
VPS39-213ENST00000570062 C10orf99Q6UWK7 81 aa6.04□□□□□ -1.44
VPS39-213ENST00000570062 RBPMS2Q6ZRY4 209 aaKnown RBP6.04□□□□□ -1.44
VPS39-213ENST00000570062 NDUFA11Q86Y39 141 aa6.04□□□□□ -1.44
VPS39-213ENST00000570062 OR2K2Q8NGT1 345 aa6.04□□□□□ -1.44
VPS39-213ENST00000570062 ODF3Q96PU9 254 aa6.04□□□□□ -1.44
VPS39-213ENST00000570062 GNB1LQ9BYB4 327 aa6.04□□□□□ -1.44
VPS39-213ENST00000570062 RNASE7Q9H1E1 156 aaKnown RBP6.04□□□□□ -1.44
VPS39-213ENST00000570062 AURKAIP1Q9NWT8 199 aaPredicted RBP6.04□□□□□ -1.44
VPS39-213ENST00000570062 TMA7Q9Y2S6 64 aaKnown RBP6.04□□□□□ -1.44
VPS39-213ENST00000570062 FN1P02751 2386 aaKnown RBP6.04□□□□□ -1.44
VPS39-213ENST00000570062 IGHV3OR16-13A0A075B7E8 117 aa6.03□□□□□ -1.44
VPS39-213ENST00000570062 IGHV3-49A0A0A0MS15 119 aa6.03□□□□□ -1.44
VPS39-213ENST00000570062 TGIF2-C20orf24A0A0A6YYL0 155 aa6.03□□□□□ -1.44
VPS39-213ENST00000570062 IGHV3-74A0A0B4J1X5 117 aa6.03□□□□□ -1.44
VPS39-213ENST00000570062 OR4C46A6NHA9 309 aa6.03□□□□□ -1.44
VPS39-213ENST00000570062 INAFM1C9JVW0 142 aa6.03□□□□□ -1.44
VPS39-213ENST00000570062 CCL24O00175 119 aa6.03□□□□□ -1.44
VPS39-213ENST00000570062 CXCL1P09341 107 aa6.03□□□□□ -1.44
VPS39-213ENST00000570062 TSPOP30536 169 aa6.03□□□□□ -1.44
VPS39-213ENST00000570062 TCTEX1D4Q5JR98 221 aa6.03□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms