RNA–Protein interactions for RNA: ENST00000568497.6

CLN3-235, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 758 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-235ENST00000568497 ASB13Q8WXK3 278 aa9.94□□□□□ -0.82
CLN3-235ENST00000568497 RAB24Q969Q5 203 aa9.94□□□□□ -0.82
CLN3-235ENST00000568497 SGK494Q96LW2 274 aa9.94□□□□□ -0.82
CLN3-235ENST00000568497 AGPAT4-IT1Q9H0P7 198 aa9.94□□□□□ -0.82
CLN3-235ENST00000568497 BORCS7-ASMTA0A0B4J1R7 106 aa9.93□□□□□ -0.82
CLN3-235ENST00000568497 NUTF2P61970 127 aaKnown RBP9.93□□□□□ -0.82
CLN3-235ENST00000568497 GUK1Q16774 197 aa9.93□□□□□ -0.82
CLN3-235ENST00000568497 KHDC3LQ587J8 217 aa9.93□□□□□ -0.82
CLN3-235ENST00000568497 GFI1BQ5VTD9 330 aa9.93□□□□□ -0.82
CLN3-235ENST00000568497 KCNRGQ8N5I3 272 aa9.93□□□□□ -0.82
CLN3-235ENST00000568497 MAPKAPK5-AS1Q8N8E1 139 aa9.93□□□□□ -0.82
CLN3-235ENST00000568497 OR10J6PQ8NGY7 276 aa9.93□□□□□ -0.82
CLN3-235ENST00000568497 C2CD4CQ8TF44 421 aa9.93□□□□□ -0.82
CLN3-235ENST00000568497 IGF2BP2-AS1Q96M15 143 aa9.93□□□□□ -0.82
CLN3-235ENST00000568497 TMEM208Q9BTX3 173 aa9.93□□□□□ -0.82
CLN3-235ENST00000568497 HERC1Q15751 4861 aa9.92□□□□□ -0.82
CLN3-235ENST00000568497 BTN1A1Q13410 526 aa9.92□□□□□ -0.82
CLN3-235ENST00000568497 TMEM41BQ5BJD5 291 aa9.92□□□□□ -0.82
CLN3-235ENST00000568497 TMUB2Q71RG4 321 aa9.92□□□□□ -0.82
CLN3-235ENST00000568497 C11orf45Q8TAV5 145 aa9.92□□□□□ -0.82
CLN3-235ENST00000568497 ARPC5LQ9BPX5 153 aa9.92□□□□□ -0.82
CLN3-235ENST00000568497 PSMG3Q9BT73 122 aaPredicted RBP9.92□□□□□ -0.82
CLN3-235ENST00000568497 GOLT1BQ9Y3E0 138 aa9.92□□□□□ -0.82
CLN3-235ENST00000568497 TRAV12-3A0A0B4J271 114 aa9.91□□□□□ -0.82
CLN3-235ENST00000568497 LOC102723971A0A1B0GUV8 181 aa9.91□□□□□ -0.82
CLN3-235ENST00000568497 PGPA6NDG6 321 aa9.91□□□□□ -0.82
CLN3-235ENST00000568497 IGLL5B9A064 214 aa9.91□□□□□ -0.82
CLN3-235ENST00000568497 NPIPB6E9PJ23 425 aa9.91□□□□□ -0.82
CLN3-235ENST00000568497 INSP01308 110 aa9.91□□□□□ -0.82
CLN3-235ENST00000568497 GCHFRP30047 84 aa9.91□□□□□ -0.82
CLN3-235ENST00000568497 LGALSLQ3ZCW2 172 aaPredicted RBP9.91□□□□□ -0.82
CLN3-235ENST00000568497 Q6ZTC4 211 aa9.91□□□□□ -0.82
CLN3-235ENST00000568497 CLUHP3Q96NS8 147 aa9.91□□□□□ -0.82
CLN3-235ENST00000568497 LINC01587Q99440 93 aa9.91□□□□□ -0.82
CLN3-235ENST00000568497 ZNF471Q9BX82 626 aaPredicted RBP9.91□□□□□ -0.82
CLN3-235ENST00000568497 C1QTNF4Q9BXJ3 329 aa9.91□□□□□ -0.82
CLN3-235ENST00000568497 AAMDCQ9H7C9 122 aa9.91□□□□□ -0.82
CLN3-235ENST00000568497 TRAV8-1A0A0A6YYK1 113 aa9.9□□□□□ -0.82
CLN3-235ENST00000568497 ZNF253O75346 499 aa9.9□□□□□ -0.82
CLN3-235ENST00000568497 STAG3L2P0CL84 134 aa9.9□□□□□ -0.82
CLN3-235ENST00000568497 STAG3L3P0CL85 134 aa9.9□□□□□ -0.82
CLN3-235ENST00000568497 MIFP14174 115 aa9.9□□□□□ -0.82
CLN3-235ENST00000568497 RNASE4P34096 147 aaKnown RBP9.9□□□□□ -0.82
CLN3-235ENST00000568497 NKX2-5P52952 324 aaPredicted RBP9.9□□□□□ -0.82
CLN3-235ENST00000568497 TAS2R45P59539 299 aa9.9□□□□□ -0.82
CLN3-235ENST00000568497 UBE2G2P60604 165 aa9.9□□□□□ -0.82
CLN3-235ENST00000568497 C12orf74Q32Q52 190 aa9.9□□□□□ -0.82
CLN3-235ENST00000568497 ACTR3CQ9C0K3 210 aaPredicted RBP9.9□□□□□ -0.82
CLN3-235ENST00000568497 C11orf68Q9H3H3 251 aaKnown RBP9.9□□□□□ -0.82
CLN3-235ENST00000568497 HMSDA8MTL9 139 aa9.89□□□□□ -0.83
CLN3-235ENST00000568497 BCL2L11O43521 198 aa9.89□□□□□ -0.83
CLN3-235ENST00000568497 CDKN1BP46527 198 aa9.89□□□□□ -0.83
CLN3-235ENST00000568497 PDE6HQ13956 83 aa9.89□□□□□ -0.83
CLN3-235ENST00000568497 AKR1C8PQ5T2L2 129 aa9.89□□□□□ -0.83
CLN3-235ENST00000568497 YTHDF2Q9Y5A9 579 aaKnown RBP9.89□□□□□ -0.83
CLN3-235ENST00000568497 M0R2N4 97 aa9.88□□□□□ -0.83
CLN3-235ENST00000568497 RTL8CO15255 209 aa9.88□□□□□ -0.83
CLN3-235ENST00000568497 HBE1P02100 147 aa9.88□□□□□ -0.83
CLN3-235ENST00000568497 HTN3P15516 51 aa9.88□□□□□ -0.83
CLN3-235ENST00000568497 FAM222AQ5U5X8 452 aa9.88□□□□□ -0.83
CLN3-235ENST00000568497 GOLT1AQ6ZVE7 132 aa9.88□□□□□ -0.83
CLN3-235ENST00000568497 TMED6Q8WW62 240 aa9.88□□□□□ -0.83
CLN3-235ENST00000568497 GNPNAT1Q96EK6 184 aaPredicted RBP9.88□□□□□ -0.83
CLN3-235ENST00000568497 PKD1P98161 4303 aa9.87□□□□□ -0.83
CLN3-235ENST00000568497 KANTRA0A1W2PQU2 76 aa9.87□□□□□ -0.83
CLN3-235ENST00000568497 PLAC8L1A1L4L8 177 aa9.87□□□□□ -0.83
CLN3-235ENST00000568497 GGTLC3B5MD39 225 aa9.87□□□□□ -0.83
CLN3-235ENST00000568497 DIRC3C9JPN6 131 aa9.87□□□□□ -0.83
CLN3-235ENST00000568497 F6UZH7 168 aa9.87□□□□□ -0.83
CLN3-235ENST00000568497 TAAR5O14804 337 aa9.87□□□□□ -0.83
CLN3-235ENST00000568497 PFDN1O60925 122 aa9.87□□□□□ -0.83
CLN3-235ENST00000568497 SLC25A5P05141 298 aaKnown RBP9.87□□□□□ -0.83
CLN3-235ENST00000568497 SERF2P84101 59 aa9.87□□□□□ -0.83
CLN3-235ENST00000568497 RRN3P1Q2M238 152 aa9.87□□□□□ -0.83
CLN3-235ENST00000568497 AKAP14Q86UN6 197 aa9.87□□□□□ -0.83
CLN3-235ENST00000568497 TCTE3Q8IZS6 198 aa9.87□□□□□ -0.83
CLN3-235ENST00000568497 ZFAND2AQ8N6M9 145 aa9.87□□□□□ -0.83
CLN3-235ENST00000568497 MRPL53Q96EL3 112 aaKnown RBP9.87□□□□□ -0.83
CLN3-235ENST00000568497 TVP23CQ96ET8 276 aa9.87□□□□□ -0.83
CLN3-235ENST00000568497 OTORQ9NRC9 128 aa9.87□□□□□ -0.83
CLN3-235ENST00000568497 TP53TG3Q9ULZ0 132 aa9.87□□□□□ -0.83
CLN3-235ENST00000568497 APLNQ9ULZ1 77 aa9.87□□□□□ -0.83
CLN3-235ENST00000568497 PRELID1Q9Y255 219 aa9.87□□□□□ -0.83
CLN3-235ENST00000568497 A0A0D9SG52 128 aa9.86□□□□□ -0.83
CLN3-235ENST00000568497 LEPP41159 167 aa9.86□□□□□ -0.83
CLN3-235ENST00000568497 ZNF345Q14585 488 aa9.86□□□□□ -0.83
CLN3-235ENST00000568497 PQLC2Q6ZP29 291 aa9.86□□□□□ -0.83
CLN3-235ENST00000568497 FAM213BQ8TBF2 198 aa9.86□□□□□ -0.83
CLN3-235ENST00000568497 FAM19A4Q96LR4 140 aa9.86□□□□□ -0.83
CLN3-235ENST00000568497 LINC00479Q96M42 142 aa9.86□□□□□ -0.83
CLN3-235ENST00000568497 BOLA1Q9Y3E2 137 aa9.86□□□□□ -0.83
CLN3-235ENST00000568497 TRAV34A0A0B4J273 112 aa9.85□□□□□ -0.83
CLN3-235ENST00000568497 CTXND1A0A1B0GTU2 59 aa9.85□□□□□ -0.83
CLN3-235ENST00000568497 C7orf71A4D174 169 aa9.85□□□□□ -0.83
CLN3-235ENST00000568497 MAP1LC3B2A6NCE7 125 aa9.85□□□□□ -0.83
CLN3-235ENST00000568497 MBP02144 154 aa9.85□□□□□ -0.83
CLN3-235ENST00000568497 CSN1S1P47710 185 aa9.85□□□□□ -0.83
CLN3-235ENST00000568497 SUMO1P63165 101 aaKnown RBP9.85□□□□□ -0.83
CLN3-235ENST00000568497 MUC21Q5SSG8 566 aa9.85□□□□□ -0.83
CLN3-235ENST00000568497 C9orf47Q6ZRZ4 202 aa9.85□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms