RNA–Protein interactions for RNA: ENST00000566040.1

CLN3-220, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 544 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-220ENST00000566040 INSP01308 110 aa7.01□□□□□ -1.29
CLN3-220ENST00000566040 CDKN1BP46527 198 aa7.01□□□□□ -1.29
CLN3-220ENST00000566040 RANP62826 216 aaKnown RBP7.01□□□□□ -1.29
CLN3-220ENST00000566040 GNG5P63218 68 aa7.01□□□□□ -1.29
CLN3-220ENST00000566040 BTN1A1Q13410 526 aa7.01□□□□□ -1.29
CLN3-220ENST00000566040 PQLC2Q6ZP29 291 aa7.01□□□□□ -1.29
CLN3-220ENST00000566040 ARPC5LQ9BPX5 153 aa7.01□□□□□ -1.29
CLN3-220ENST00000566040 DKK2Q9UBU2 259 aa7.01□□□□□ -1.29
CLN3-220ENST00000566040 YTHDF2Q9Y5A9 579 aaKnown RBP7.01□□□□□ -1.29
CLN3-220ENST00000566040 LCE6AA0A183 80 aa7□□□□□ -1.29
CLN3-220ENST00000566040 SMIM9A6NGZ8 99 aa7□□□□□ -1.29
CLN3-220ENST00000566040 TAAR5O14804 337 aa7□□□□□ -1.29
CLN3-220ENST00000566040 JTBO76095 146 aa7□□□□□ -1.29
CLN3-220ENST00000566040 IGLV2-11P01706 119 aa7□□□□□ -1.29
CLN3-220ENST00000566040 C1QBP02746 253 aa7□□□□□ -1.29
CLN3-220ENST00000566040 AMBPP02760 352 aa7□□□□□ -1.29
CLN3-220ENST00000566040 CEMP1Q6PRD7 247 aaPredicted RBP7□□□□□ -1.29
CLN3-220ENST00000566040 TMUB2Q71RG4 321 aa7□□□□□ -1.29
CLN3-220ENST00000566040 LYPD1Q8N2G4 141 aa7□□□□□ -1.29
CLN3-220ENST00000566040 OR10J6PQ8NGY7 276 aa7□□□□□ -1.29
CLN3-220ENST00000566040 C11orf45Q8TAV5 145 aa7□□□□□ -1.29
CLN3-220ENST00000566040 RNASE8Q8TDE3 154 aaKnown RBP7□□□□□ -1.29
CLN3-220ENST00000566040 PHLDA1Q8WV24 401 aaPredicted RBP7□□□□□ -1.29
CLN3-220ENST00000566040 GNPNAT1Q96EK6 184 aaPredicted RBP7□□□□□ -1.29
CLN3-220ENST00000566040 OTORQ9NRC9 128 aa7□□□□□ -1.29
CLN3-220ENST00000566040 ZNF492Q9P255 531 aa7□□□□□ -1.29
CLN3-220ENST00000566040 DNAH17Q9UFH2 4485 aa6.99□□□□□ -1.29
CLN3-220ENST00000566040 TRAV8-1A0A0A6YYK1 113 aa6.99□□□□□ -1.29
CLN3-220ENST00000566040 BORCS7-ASMTA0A0B4J1R7 106 aa6.99□□□□□ -1.29
CLN3-220ENST00000566040 CTXND1A0A1B0GTU2 59 aa6.99□□□□□ -1.29
CLN3-220ENST00000566040 LOC102723971A0A1B0GUV8 181 aa6.99□□□□□ -1.29
CLN3-220ENST00000566040 RBAKDNA6NC62 111 aa6.99□□□□□ -1.29
CLN3-220ENST00000566040 TSPOP30536 169 aa6.99□□□□□ -1.29
CLN3-220ENST00000566040 FGF8P55075 233 aaPredicted RBP6.99□□□□□ -1.29
CLN3-220ENST00000566040 TAS2R45P59539 299 aa6.99□□□□□ -1.29
CLN3-220ENST00000566040 FAM222AQ5U5X8 452 aa6.99□□□□□ -1.29
CLN3-220ENST00000566040 C9orf62Q8N4C0 152 aa6.99□□□□□ -1.29
CLN3-220ENST00000566040 LINC00612Q8N6U2 182 aa6.99□□□□□ -1.29
CLN3-220ENST00000566040 C11orf72Q8NBR9 251 aa6.99□□□□□ -1.29
CLN3-220ENST00000566040 STOML3Q8TAV4 291 aa6.99□□□□□ -1.29
CLN3-220ENST00000566040 PPP1R14DQ9NXH3 145 aa6.99□□□□□ -1.29
CLN3-220ENST00000566040 GOLT1BQ9Y3E0 138 aa6.99□□□□□ -1.29
CLN3-220ENST00000566040 MUC4Q99102 2169 aa6.99□□□□□ -1.29
CLN3-220ENST00000566040 TRAV12-3A0A0B4J271 114 aa6.98□□□□□ -1.29
CLN3-220ENST00000566040 A0A0D9SG52 128 aa6.98□□□□□ -1.29
CLN3-220ENST00000566040 A0A1W2PPV4 95 aa6.98□□□□□ -1.29
CLN3-220ENST00000566040 PGPA6NDG6 321 aa6.98□□□□□ -1.29
CLN3-220ENST00000566040 CXorf65A6NEN9 183 aa6.98□□□□□ -1.29
CLN3-220ENST00000566040 J3KRW8 73 aa6.98□□□□□ -1.29
CLN3-220ENST00000566040 SLC25A5P05141 298 aaKnown RBP6.98□□□□□ -1.29
CLN3-220ENST00000566040 LINC00477Q96M19 166 aa6.98□□□□□ -1.29
CLN3-220ENST00000566040 ACTR3CQ9C0K3 210 aaPredicted RBP6.98□□□□□ -1.29
CLN3-220ENST00000566040 AAMDCQ9H7C9 122 aa6.98□□□□□ -1.29
CLN3-220ENST00000566040 C7orf71A4D174 169 aa6.97□□□□□ -1.29
CLN3-220ENST00000566040 CXorf1O96002 111 aa6.97□□□□□ -1.29
CLN3-220ENST00000566040 HBE1P02100 147 aa6.97□□□□□ -1.29
CLN3-220ENST00000566040 MBP02144 154 aa6.97□□□□□ -1.29
CLN3-220ENST00000566040 SEC11BP0C7V7 166 aa6.97□□□□□ -1.29
CLN3-220ENST00000566040 ZNF138P52744 262 aa6.97□□□□□ -1.29
CLN3-220ENST00000566040 TAS2R60P59551 318 aa6.97□□□□□ -1.29
CLN3-220ENST00000566040 RRN3P1Q2M238 152 aa6.97□□□□□ -1.29
CLN3-220ENST00000566040 GOLT1AQ6ZVE7 132 aa6.97□□□□□ -1.29
CLN3-220ENST00000566040 CCDC28AQ8IWP9 274 aa6.97□□□□□ -1.29
CLN3-220ENST00000566040 TMEM256Q8N2U0 113 aa6.97□□□□□ -1.29
CLN3-220ENST00000566040 ARL6IP6Q8N6S5 226 aa6.97□□□□□ -1.29
CLN3-220ENST00000566040 TMED6Q8WW62 240 aa6.97□□□□□ -1.29
CLN3-220ENST00000566040 C20orf144Q9BQM9 153 aa6.97□□□□□ -1.29
CLN3-220ENST00000566040 LINC00467Q9BRT7 94 aa6.97□□□□□ -1.29
CLN3-220ENST00000566040 ZNF471Q9BX82 626 aaPredicted RBP6.97□□□□□ -1.29
CLN3-220ENST00000566040 TP53TG3Q9ULZ0 132 aa6.97□□□□□ -1.29
CLN3-220ENST00000566040 APLNQ9ULZ1 77 aa6.97□□□□□ -1.29
CLN3-220ENST00000566040 FAT2Q9NYQ8 4349 aa6.97□□□□□ -1.29
CLN3-220ENST00000566040 HECTD4Q9Y4D8 3996 aa6.96□□□□□ -1.29
CLN3-220ENST00000566040 TRBV7-9A0A0J9YWB2 115 aa6.96□□□□□ -1.3
CLN3-220ENST00000566040 MAP1LC3B2A6NCE7 125 aa6.96□□□□□ -1.3
CLN3-220ENST00000566040 NUPR2A6NF83 97 aa6.96□□□□□ -1.3
CLN3-220ENST00000566040 FAM74A7A6NL05 159 aa6.96□□□□□ -1.3
CLN3-220ENST00000566040 H7BYZ3 331 aa6.96□□□□□ -1.3
CLN3-220ENST00000566040 TCRAP04437 139 aa6.96□□□□□ -1.3
CLN3-220ENST00000566040 NMBP08949 121 aa6.96□□□□□ -1.3
CLN3-220ENST00000566040 LEPP41159 167 aa6.96□□□□□ -1.3
CLN3-220ENST00000566040 ZNF80P51504 273 aaPredicted RBP6.96□□□□□ -1.3
CLN3-220ENST00000566040 EMP1P54849 157 aa6.96□□□□□ -1.3
CLN3-220ENST00000566040 Q6AWC8 147 aa6.96□□□□□ -1.3
CLN3-220ENST00000566040 AKAP14Q86UN6 197 aa6.96□□□□□ -1.3
CLN3-220ENST00000566040 MBD3L1Q8WWY6 194 aa6.96□□□□□ -1.3
CLN3-220ENST00000566040 LINC00476Q8WZB0 136 aa6.96□□□□□ -1.3
CLN3-220ENST00000566040 SGK494Q96LW2 274 aa6.96□□□□□ -1.3
CLN3-220ENST00000566040 HYLS1Q96M11 299 aa6.96□□□□□ -1.3
CLN3-220ENST00000566040 MAP1LC3BQ9GZQ8 125 aa6.96□□□□□ -1.3
CLN3-220ENST00000566040 C11orf21Q9P2W6 132 aa6.96□□□□□ -1.3
CLN3-220ENST00000566040 EPPK1P58107 5090 aaKnown RBP6.96□□□□□ -1.3
CLN3-220ENST00000566040 A0A1W2PRE2 83 aa6.95□□□□□ -1.3
CLN3-220ENST00000566040 TMEM189A5PLL7 270 aa6.95□□□□□ -1.3
CLN3-220ENST00000566040 AKR1C8PQ5T2L2 129 aa6.95□□□□□ -1.3
CLN3-220ENST00000566040 ZNF575Q86XF7 245 aa6.95□□□□□ -1.3
CLN3-220ENST00000566040 C5orf17Q8NAS9 161 aa6.95□□□□□ -1.3
CLN3-220ENST00000566040 TMEM263Q8WUH6 116 aaKnown RBP6.95□□□□□ -1.3
CLN3-220ENST00000566040 LINC00479Q96M42 142 aa6.95□□□□□ -1.3
CLN3-220ENST00000566040 C8orf49Q96NF6 230 aa6.95□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 60.7 ms