RNA–Protein interactions for RNA: ENST00000563842.5

CLK3-213, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 860 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-213ENST00000563842 RAB2AP61019 212 aa9.56□□□□□ -0.88
CLK3-213ENST00000563842 RANP62826 216 aaKnown RBP9.56□□□□□ -0.88
CLK3-213ENST00000563842 ERCC8Q13216 396 aa9.56□□□□□ -0.88
CLK3-213ENST00000563842 GFI1BQ5VTD9 330 aa9.56□□□□□ -0.88
CLK3-213ENST00000563842 TMEM263Q8WUH6 116 aaKnown RBP9.56□□□□□ -0.88
CLK3-213ENST00000563842 ZNF503Q96F45 646 aa9.56□□□□□ -0.88
CLK3-213ENST00000563842 PYGO2Q9BRQ0 406 aa9.56□□□□□ -0.88
CLK3-213ENST00000563842 AGPAT4-IT1Q9H0P7 198 aa9.56□□□□□ -0.88
CLK3-213ENST00000563842 Q9H3A6 140 aa9.56□□□□□ -0.88
CLK3-213ENST00000563842 APLNQ9ULZ1 77 aa9.56□□□□□ -0.88
CLK3-213ENST00000563842 TIMM8BQ9Y5J9 83 aaPredicted RBP9.56□□□□□ -0.88
CLK3-213ENST00000563842 IGHV4-4A0A075B6R2 117 aa9.55□□□□□ -0.88
CLK3-213ENST00000563842 TRBV7-9A0A0J9YWB2 115 aa9.55□□□□□ -0.88
CLK3-213ENST00000563842 RNF222A6NCQ9 220 aa9.55□□□□□ -0.88
CLK3-213ENST00000563842 TAAR5O14804 337 aa9.55□□□□□ -0.88
CLK3-213ENST00000563842 ARL6IP6Q8N6S5 226 aa9.55□□□□□ -0.88
CLK3-213ENST00000563842 CMTM2Q8TAZ6 248 aa9.55□□□□□ -0.88
CLK3-213ENST00000563842 NDUFAF3Q9BU61 184 aa9.55□□□□□ -0.88
CLK3-213ENST00000563842 ALMS1Q8TCU4 4167 aa9.55□□□□□ -0.88
CLK3-213ENST00000563842 PLECQ15149 4684 aaKnown RBP9.54□□□□□ -0.88
CLK3-213ENST00000563842 SACSQ9NZJ4 4579 aa9.54□□□□□ -0.88
CLK3-213ENST00000563842 IGKV2-40A0A087WW87 121 aaPredicted RBP9.54□□□□□ -0.88
CLK3-213ENST00000563842 TRAV12-3A0A0B4J271 114 aa9.54□□□□□ -0.88
CLK3-213ENST00000563842 C7orf71A4D174 169 aa9.54□□□□□ -0.88
CLK3-213ENST00000563842 J3KRW8 73 aa9.54□□□□□ -0.88
CLK3-213ENST00000563842 IGKV2D-40P01614 121 aaPredicted RBP9.54□□□□□ -0.88
CLK3-213ENST00000563842 GPX1P07203 203 aa9.54□□□□□ -0.88
CLK3-213ENST00000563842 CRISP2P16562 243 aa9.54□□□□□ -0.88
CLK3-213ENST00000563842 AZU1P20160 251 aa9.54□□□□□ -0.88
CLK3-213ENST00000563842 FAM19A4Q96LR4 140 aa9.54□□□□□ -0.88
CLK3-213ENST00000563842 OTORQ9NRC9 128 aa9.54□□□□□ -0.88
CLK3-213ENST00000563842 ZNF492Q9P255 531 aa9.54□□□□□ -0.88
CLK3-213ENST00000563842 PGPA6NDG6 321 aa9.53□□□□□ -0.88
CLK3-213ENST00000563842 KLLNB2CW77 178 aa9.53□□□□□ -0.88
CLK3-213ENST00000563842 PRM2P04554 102 aa9.53□□□□□ -0.88
CLK3-213ENST00000563842 STAG3L2P0CL84 134 aa9.53□□□□□ -0.88
CLK3-213ENST00000563842 STAG3L3P0CL85 134 aa9.53□□□□□ -0.88
CLK3-213ENST00000563842 ZNF138P52744 262 aa9.53□□□□□ -0.88
CLK3-213ENST00000563842 KIR3DS1Q14943 382 aa9.53□□□□□ -0.88
CLK3-213ENST00000563842 RPL7L1Q6DKI1 246 aaKnown RBP9.53□□□□□ -0.88
CLK3-213ENST00000563842 RNASE8Q8TDE3 154 aaKnown RBP9.53□□□□□ -0.88
CLK3-213ENST00000563842 VGLL1Q99990 258 aa9.53□□□□□ -0.88
CLK3-213ENST00000563842 ACTR3CQ9C0K3 210 aaPredicted RBP9.53□□□□□ -0.88
CLK3-213ENST00000563842 LENEPQ9Y5L5 61 aa9.53□□□□□ -0.88
CLK3-213ENST00000563842 PLAC8L1A1L4L8 177 aa9.52□□□□□ -0.89
CLK3-213ENST00000563842 SNURFLB1AK76 121 aa9.52□□□□□ -0.89
CLK3-213ENST00000563842 ARPC5O15511 151 aa9.52□□□□□ -0.89
CLK3-213ENST00000563842 ARL14EPLP0DKL9 152 aa9.52□□□□□ -0.89
CLK3-213ENST00000563842 RAB24Q969Q5 203 aa9.52□□□□□ -0.89
CLK3-213ENST00000563842 RYR2Q92736 4967 aa9.52□□□□□ -0.89
CLK3-213ENST00000563842 CBY3A6NI87 242 aa9.51□□□□□ -0.89
CLK3-213ENST00000563842 DIRC3C9JPN6 131 aa9.51□□□□□ -0.89
CLK3-213ENST00000563842 G3V3Q6 166 aa9.51□□□□□ -0.89
CLK3-213ENST00000563842 HMGB3O15347 200 aaKnown RBP9.51□□□□□ -0.89
CLK3-213ENST00000563842 CXorf1O96002 111 aa9.51□□□□□ -0.89
CLK3-213ENST00000563842 DEFB130BP0DP73 79 aa9.51□□□□□ -0.89
CLK3-213ENST00000563842 DEFB130AP0DP74 79 aa9.51□□□□□ -0.89
CLK3-213ENST00000563842 HTN3P15516 51 aa9.51□□□□□ -0.89
CLK3-213ENST00000563842 RNASE4P34096 147 aaKnown RBP9.51□□□□□ -0.89
CLK3-213ENST00000563842 ZNF680Q8NEM1 530 aa9.51□□□□□ -0.89
CLK3-213ENST00000563842 TMED6Q8WW62 240 aa9.51□□□□□ -0.89
CLK3-213ENST00000563842 HYLS1Q96M11 299 aa9.51□□□□□ -0.89
CLK3-213ENST00000563842 LINC00467Q9BRT7 94 aa9.51□□□□□ -0.89
CLK3-213ENST00000563842 SH3BGRL3Q9H299 93 aa9.51□□□□□ -0.89
CLK3-213ENST00000563842 NOP10Q9NPE3 64 aaKnown RBP9.51□□□□□ -0.89
CLK3-213ENST00000563842 TMEM167BQ9NRX6 74 aa9.51□□□□□ -0.89
CLK3-213ENST00000563842 PLA2G2EQ9NZK7 142 aa9.51□□□□□ -0.89
CLK3-213ENST00000563842 SERTM2A0A1B0GWG4 89 aa9.5□□□□□ -0.89
CLK3-213ENST00000563842 RGS13O14921 159 aa9.5□□□□□ -0.89
CLK3-213ENST00000563842 ZNF324O75467 553 aaPredicted RBP9.5□□□□□ -0.89
CLK3-213ENST00000563842 EIF3GO75821 320 aaKnown RBP eCLIP9.5□□□□□ -0.89
CLK3-213ENST00000563842 ATP5G1P05496 136 aa9.5□□□□□ -0.89
CLK3-213ENST00000563842 P0DMU3 169 aa9.5□□□□□ -0.89
CLK3-213ENST00000563842 FAM231AP0DMU4 169 aa9.5□□□□□ -0.89
CLK3-213ENST00000563842 FAM231CP0DMU5 169 aa9.5□□□□□ -0.89
CLK3-213ENST00000563842 ATP5G3P48201 142 aa9.5□□□□□ -0.89
CLK3-213ENST00000563842 BTN1A1Q13410 526 aa9.5□□□□□ -0.89
CLK3-213ENST00000563842 ZNF345Q14585 488 aa9.5□□□□□ -0.89
CLK3-213ENST00000563842 AKR1C8PQ5T2L2 129 aa9.5□□□□□ -0.89
CLK3-213ENST00000563842 EIF4E3Q8N5X7 224 aaKnown RBP9.5□□□□□ -0.89
CLK3-213ENST00000563842 ZFAND2AQ8N6M9 145 aa9.5□□□□□ -0.89
CLK3-213ENST00000563842 ST6GAL2Q96JF0 529 aa9.5□□□□□ -0.89
CLK3-213ENST00000563842 DNAH1Q9P2D7 4330 aa9.5□□□□□ -0.89
CLK3-213ENST00000563842 HMSDA8MTL9 139 aa9.49□□□□□ -0.89
CLK3-213ENST00000563842 K7EQM0 130 aa9.49□□□□□ -0.89
CLK3-213ENST00000563842 GCHFRP30047 84 aa9.49□□□□□ -0.89
CLK3-213ENST00000563842 CD300CQ08708 224 aa9.49□□□□□ -0.89
CLK3-213ENST00000563842 ANXA2RQ3ZCQ2 193 aa9.49□□□□□ -0.89
CLK3-213ENST00000563842 C15orf53Q8NAA6 179 aa9.49□□□□□ -0.89
CLK3-213ENST00000563842 SUN5Q8TC36 379 aa9.49□□□□□ -0.89
CLK3-213ENST00000563842 ARPC5LQ9BPX5 153 aa9.49□□□□□ -0.89
CLK3-213ENST00000563842 RPH3ALQ9UNE2 315 aa9.49□□□□□ -0.89
CLK3-213ENST00000563842 A0A0D9SG52 128 aa9.48□□□□□ -0.89
CLK3-213ENST00000563842 CTXND1A0A1B0GTU2 59 aa9.48□□□□□ -0.89
CLK3-213ENST00000563842 DAZ2Q13117 558 aaKnown RBP9.48□□□□□ -0.89
CLK3-213ENST00000563842 GOLT1AQ6ZVE7 132 aa9.48□□□□□ -0.89
CLK3-213ENST00000563842 KCNRGQ8N5I3 272 aa9.48□□□□□ -0.89
CLK3-213ENST00000563842 C5orf17Q8NAS9 161 aa9.48□□□□□ -0.89
CLK3-213ENST00000563842 Q8TAT8 98 aa9.48□□□□□ -0.89
CLK3-213ENST00000563842 IGHV1OR15-1A0A075B7D0 117 aa9.47□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms