RNA–Protein interactions for RNA: ENST00000563207.1

USB1-208, Transcript of U6 snRNA biogenesis phosphodiesterase 1, humanhuman

TSL 5

Gene USB1, Length 464 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USB1-208ENST00000563207 AMTNQ6UX39 209 aa11.36□□□□□ -0.59
USB1-208ENST00000563207 IQCF2Q8IXL9 164 aa11.36□□□□□ -0.59
USB1-208ENST00000563207 OR11H2Q8NH07 326 aa11.36□□□□□ -0.59
USB1-208ENST00000563207 CMTM2Q8TAZ6 248 aa11.36□□□□□ -0.59
USB1-208ENST00000563207 SFT2D1Q8WV19 159 aa11.36□□□□□ -0.59
USB1-208ENST00000563207 LINC00477Q96M19 166 aa11.36□□□□□ -0.59
USB1-208ENST00000563207 ODF3Q96PU9 254 aa11.36□□□□□ -0.59
USB1-208ENST00000563207 RARRES2Q99969 163 aa11.36□□□□□ -0.59
USB1-208ENST00000563207 ARL2-SNX15V9GYD0 113 aa11.36□□□□□ -0.59
USB1-208ENST00000563207 SERTM2A0A1B0GWG4 89 aa11.35□□□□□ -0.59
USB1-208ENST00000563207 NUPR2A6NF83 97 aa11.35□□□□□ -0.59
USB1-208ENST00000563207 NPIPB6E9PJ23 425 aa11.35□□□□□ -0.59
USB1-208ENST00000563207 ZNF705DP0CH99 300 aaPredicted RBP11.35□□□□□ -0.59
USB1-208ENST00000563207 ZNF705BP0CI00 300 aaPredicted RBP11.35□□□□□ -0.59
USB1-208ENST00000563207 PPT1P50897 306 aa11.35□□□□□ -0.59
USB1-208ENST00000563207 C9orf47Q6ZRZ4 202 aa11.35□□□□□ -0.59
USB1-208ENST00000563207 PHLDA1Q8WV24 401 aaPredicted RBP11.35□□□□□ -0.59
USB1-208ENST00000563207 VPS13DQ5THJ4 4388 aa11.35□□□□□ -0.59
USB1-208ENST00000563207 TRAV1-1A0A0B4J248 108 aa11.34□□□□□ -0.59
USB1-208ENST00000563207 BOLA2-SMG1P6H3BVE0 249 aa11.34□□□□□ -0.59
USB1-208ENST00000563207 HBE1P02100 147 aa11.34□□□□□ -0.59
USB1-208ENST00000563207 TSPOP30536 169 aa11.34□□□□□ -0.59
USB1-208ENST00000563207 FGF8P55075 233 aaPredicted RBP11.34□□□□□ -0.59
USB1-208ENST00000563207 TMEM78Q5T7P6 136 aa11.34□□□□□ -0.59
USB1-208ENST00000563207 C5orf17Q8NAS9 161 aa11.34□□□□□ -0.59
USB1-208ENST00000563207 CSNK1G2-AS1Q8NCQ2 148 aa11.34□□□□□ -0.59
USB1-208ENST00000563207 SLC35B3Q9H1N7 401 aa11.34□□□□□ -0.59
USB1-208ENST00000563207 DNAH10Q8IVF4 4471 aa11.33□□□□□ -0.6
USB1-208ENST00000563207 TRBV7-9A0A0J9YWB2 115 aa11.33□□□□□ -0.6
USB1-208ENST00000563207 DIRC3C9JPN6 131 aa11.33□□□□□ -0.6
USB1-208ENST00000563207 CDKN1BP46527 198 aa11.33□□□□□ -0.6
USB1-208ENST00000563207 SUMO1P63165 101 aaKnown RBP11.33□□□□□ -0.6
USB1-208ENST00000563207 TMPRSS5Q9H3S3 457 aa11.33□□□□□ -0.6
USB1-208ENST00000563207 XCL2Q9UBD3 114 aa11.33□□□□□ -0.6
USB1-208ENST00000563207 BOLA1Q9Y3E2 137 aa11.33□□□□□ -0.6
USB1-208ENST00000563207 NMBP08949 121 aa11.32□□□□□ -0.6
USB1-208ENST00000563207 LEPP41159 167 aa11.32□□□□□ -0.6
USB1-208ENST00000563207 IGF2BP2-AS1Q96M15 143 aa11.32□□□□□ -0.6
USB1-208ENST00000563207 TCEAL7Q9BRU2 100 aa11.32□□□□□ -0.6
USB1-208ENST00000563207 AGPAT4-IT1Q9H0P7 198 aa11.32□□□□□ -0.6
USB1-208ENST00000563207 LENEPQ9Y5L5 61 aa11.32□□□□□ -0.6
USB1-208ENST00000563207 FBLL1A6NHQ2 334 aaKnown RBP11.31□□□□□ -0.6
USB1-208ENST00000563207 FAM74A7A6NL05 159 aa11.31□□□□□ -0.6
USB1-208ENST00000563207 K7EQM0 130 aa11.31□□□□□ -0.6
USB1-208ENST00000563207 CT45A10P0DMU9 189 aa11.31□□□□□ -0.6
USB1-208ENST00000563207 BLOC1S1P78537 153 aa11.31□□□□□ -0.6
USB1-208ENST00000563207 SPINK13Q1W4C9 94 aa11.31□□□□□ -0.6
USB1-208ENST00000563207 ALKAL2Q6UX46 152 aa11.31□□□□□ -0.6
USB1-208ENST00000563207 C20orf144Q9BQM9 153 aa11.31□□□□□ -0.6
USB1-208ENST00000563207 EPDR1Q9UM22 224 aa11.31□□□□□ -0.6
USB1-208ENST00000563207 GOLT1BQ9Y3E0 138 aa11.31□□□□□ -0.6
USB1-208ENST00000563207 IGKV2-40A0A087WW87 121 aaPredicted RBP11.3□□□□□ -0.6
USB1-208ENST00000563207 ZNF705EA8MWA4 302 aaPredicted RBP11.3□□□□□ -0.6
USB1-208ENST00000563207 GGTLC3B5MD39 225 aa11.3□□□□□ -0.6
USB1-208ENST00000563207 INSP01308 110 aa11.3□□□□□ -0.6
USB1-208ENST00000563207 IGKV2D-40P01614 121 aaPredicted RBP11.3□□□□□ -0.6
USB1-208ENST00000563207 RBMY1A1P0DJD3 496 aaKnown RBP11.3□□□□□ -0.6
USB1-208ENST00000563207 RBMY1CP0DJD4 496 aa11.3□□□□□ -0.6
USB1-208ENST00000563207 ZNF138P52744 262 aa11.3□□□□□ -0.6
USB1-208ENST00000563207 FXYD7P58549 80 aa11.3□□□□□ -0.6
USB1-208ENST00000563207 RBMY1FQ15415 496 aaKnown RBP11.3□□□□□ -0.6
USB1-208ENST00000563207 TMEM256Q8N2U0 113 aa11.3□□□□□ -0.6
USB1-208ENST00000563207 C11orf45Q8TAV5 145 aa11.3□□□□□ -0.6
USB1-208ENST00000563207 NEU1Q99519 415 aa11.3□□□□□ -0.6
USB1-208ENST00000563207 VGLL1Q99990 258 aa11.3□□□□□ -0.6
USB1-208ENST00000563207 ZNF492Q9P255 531 aa11.3□□□□□ -0.6
USB1-208ENST00000563207 KLK5Q9Y337 293 aaPredicted RBP11.3□□□□□ -0.6
USB1-208ENST00000563207 SMIM9A6NGZ8 99 aa11.29□□□□□ -0.6
USB1-208ENST00000563207 F6UZH7 168 aa11.29□□□□□ -0.6
USB1-208ENST00000563207 M0R2Z0 102 aa11.29□□□□□ -0.6
USB1-208ENST00000563207 CRXO43186 299 aaPredicted RBP11.29□□□□□ -0.6
USB1-208ENST00000563207 TCRAP04437 139 aa11.29□□□□□ -0.6
USB1-208ENST00000563207 MIFP14174 115 aa11.29□□□□□ -0.6
USB1-208ENST00000563207 CRISP2P16562 243 aa11.29□□□□□ -0.6
USB1-208ENST00000563207 UBE2G2P60604 165 aa11.29□□□□□ -0.6
USB1-208ENST00000563207 ERCC8Q13216 396 aa11.29□□□□□ -0.6
USB1-208ENST00000563207 ZNF705AQ6ZN79 300 aaPredicted RBP11.29□□□□□ -0.6
USB1-208ENST00000563207 Q8NAQ8 132 aa11.29□□□□□ -0.6
USB1-208ENST00000563207 HIST1H2BAQ96A08 127 aa11.29□□□□□ -0.6
USB1-208ENST00000563207 FAM19A4Q96LR4 140 aa11.29□□□□□ -0.6
USB1-208ENST00000563207 TXNDC17Q9BRA2 123 aa11.29□□□□□ -0.6
USB1-208ENST00000563207 ATG101Q9BSB4 218 aa11.29□□□□□ -0.6
USB1-208ENST00000563207 MANBALQ9NQG1 85 aa11.29□□□□□ -0.6
USB1-208ENST00000563207 YTHDF2Q9Y5A9 579 aaKnown RBP11.29□□□□□ -0.6
USB1-208ENST00000563207 IFNA7P01567 189 aa11.28□□□□□ -0.6
USB1-208ENST00000563207 CST9LP1Q5W188 147 aa11.28□□□□□ -0.6
USB1-208ENST00000563207 GOLT1AQ6ZVE7 132 aa11.28□□□□□ -0.6
USB1-208ENST00000563207 CCDC28AQ8IWP9 274 aa11.28□□□□□ -0.6
USB1-208ENST00000563207 CYB561D1Q8N8Q1 229 aa11.28□□□□□ -0.6
USB1-208ENST00000563207 C11orf68Q9H3H3 251 aaKnown RBP11.28□□□□□ -0.6
USB1-208ENST00000563207 KLLNB2CW77 178 aa11.27□□□□□ -0.61
USB1-208ENST00000563207 PAGE4O60829 102 aa11.27□□□□□ -0.61
USB1-208ENST00000563207 PRB4P10163 310 aaPredicted RBP11.27□□□□□ -0.61
USB1-208ENST00000563207 TAGLN2P37802 199 aaKnown RBP11.27□□□□□ -0.61
USB1-208ENST00000563207 TMEM208Q9BTX3 173 aa11.27□□□□□ -0.61
USB1-208ENST00000563207 RPH3ALQ9UNE2 315 aa11.27□□□□□ -0.61
USB1-208ENST00000563207 X6R8D5 127 aa11.27□□□□□ -0.61
USB1-208ENST00000563207 TRAV12-2A0A075B6T6 113 aa11.26□□□□□ -0.61
USB1-208ENST00000563207 IGHV4-28A0A0C4DH34 117 aa11.26□□□□□ -0.61
USB1-208ENST00000563207 A0A1B0GV50 99 aa11.26□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 62.6 ms