RNA–Protein interactions for RNA: ENST00000562420.1

VPS35-203, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 740 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-203ENST00000562420 UBE2L3P68036 154 aaKnown RBP2.53□□□□□ -2
VPS35-203ENST00000562420 SLC38A11Q08AI6 406 aa2.53□□□□□ -2
VPS35-203ENST00000562420 ADIGQ0VDE8 80 aa2.53□□□□□ -2
VPS35-203ENST00000562420 C12orf74Q32Q52 190 aa2.53□□□□□ -2
VPS35-203ENST00000562420 ABCA11PQ4W5N1 156 aa2.53□□□□□ -2
VPS35-203ENST00000562420 DGAT2L6Q6ZPD8 337 aa2.53□□□□□ -2
VPS35-203ENST00000562420 LYPD6Q86Y78 171 aa2.53□□□□□ -2
VPS35-203ENST00000562420 PRR15Q8IV56 129 aa2.53□□□□□ -2
VPS35-203ENST00000562420 RPRMLQ8N4K4 120 aa2.53□□□□□ -2
VPS35-203ENST00000562420 NPWQ8N729 165 aa2.53□□□□□ -2
VPS35-203ENST00000562420 FAM57AQ8TBR7 257 aa2.53□□□□□ -2
VPS35-203ENST00000562420 PAXXQ9BUH6 204 aa2.53□□□□□ -2
VPS35-203ENST00000562420 CHAC1Q9BUX1 264 aa2.53□□□□□ -2
VPS35-203ENST00000562420 PLA2G2FQ9BZM2 168 aa2.53□□□□□ -2
VPS35-203ENST00000562420 Q9HAA7 133 aa2.53□□□□□ -2
VPS35-203ENST00000562420 HEATR5AQ86XA9 2040 aa2.52□□□□□ -2.01
VPS35-203ENST00000562420 NUP205Q92621 2012 aa2.52□□□□□ -2.01
VPS35-203ENST00000562420 NCKAP5O14513 1909 aa2.52□□□□□ -2.01
VPS35-203ENST00000562420 KMT2EQ8IZD2 1858 aa2.52□□□□□ -2.01
VPS35-203ENST00000562420 IGLV3-10A0A075B6K4 115 aa2.52□□□□□ -2.01
VPS35-203ENST00000562420 TRAV8-1A0A0A6YYK1 113 aa2.52□□□□□ -2.01
VPS35-203ENST00000562420 TRAV26-2A0A0B4J265 109 aa2.52□□□□□ -2.01
VPS35-203ENST00000562420 TRAV4A0A0B4J268 109 aa2.52□□□□□ -2.01
VPS35-203ENST00000562420 LINC01549A6NIU2 74 aa2.52□□□□□ -2.01
VPS35-203ENST00000562420 TMEM14DPA8MWL7 114 aa2.52□□□□□ -2.01
VPS35-203ENST00000562420 LY6LH3BQJ8 138 aa2.52□□□□□ -2.01
VPS35-203ENST00000562420 H3BT86 120 aa2.52□□□□□ -2.01
VPS35-203ENST00000562420 LGALS9O00182 355 aa2.52□□□□□ -2.01
VPS35-203ENST00000562420 DYNLT3P51808 116 aa2.52□□□□□ -2.01
VPS35-203ENST00000562420 NPC2P61916 151 aa2.52□□□□□ -2.01
VPS35-203ENST00000562420 REG3GQ6UW15 175 aa2.52□□□□□ -2.01
VPS35-203ENST00000562420 SDIM1Q6ZPB5 146 aa2.52□□□□□ -2.01
VPS35-203ENST00000562420 C5orf38Q86SI9 138 aa2.52□□□□□ -2.01
VPS35-203ENST00000562420 CLECL1Q8IZS7 167 aa2.52□□□□□ -2.01
VPS35-203ENST00000562420 SERP2Q8N6R1 65 aa2.52□□□□□ -2.01
VPS35-203ENST00000562420 FMC1Q96HJ9 113 aa2.52□□□□□ -2.01
VPS35-203ENST00000562420 CARD19Q96LW7 228 aa2.52□□□□□ -2.01
VPS35-203ENST00000562420 LINC00477Q96M19 166 aa2.52□□□□□ -2.01
VPS35-203ENST00000562420 GPX7Q96SL4 187 aaPredicted RBP2.52□□□□□ -2.01
VPS35-203ENST00000562420 SHANK2-AS3Q9BTD1 123 aa2.52□□□□□ -2.01
VPS35-203ENST00000562420 LIME1Q9H400 295 aa2.52□□□□□ -2.01
VPS35-203ENST00000562420 PLEKHA3Q9HB20 300 aa2.52□□□□□ -2.01
VPS35-203ENST00000562420 Q9UF83 564 aa2.52□□□□□ -2.01
VPS35-203ENST00000562420 V9GYV3 84 aa2.52□□□□□ -2.01
VPS35-203ENST00000562420 PAPPA2Q9BXP8 1791 aa2.51□□□□□ -2.01
VPS35-203ENST00000562420 ANKRD36A6QL64 1941 aa2.51□□□□□ -2.01
VPS35-203ENST00000562420 TICRRQ7Z2Z1 1910 aa2.51□□□□□ -2.01
VPS35-203ENST00000562420 IGHV3OR15-7A0A075B7D8 119 aa2.51□□□□□ -2.01
VPS35-203ENST00000562420 FAM236DA0A1B0GTK5 79 aa2.51□□□□□ -2.01
VPS35-203ENST00000562420 CXorf51AA0A1B0GTR3 108 aa2.51□□□□□ -2.01
VPS35-203ENST00000562420 UBE2L5PA0A1B0GUS4 154 aa2.51□□□□□ -2.01
VPS35-203ENST00000562420 RPL37AP8A6NKH3 93 aa2.51□□□□□ -2.01
VPS35-203ENST00000562420 KNCNA6PVL3 124 aa2.51□□□□□ -2.01
VPS35-203ENST00000562420 HMGN4O00479 90 aa2.51□□□□□ -2.01
VPS35-203ENST00000562420 UBE2L6O14933 153 aa2.51□□□□□ -2.01
VPS35-203ENST00000562420 HCRTO43612 131 aa2.51□□□□□ -2.01
VPS35-203ENST00000562420 NDUFB3O43676 98 aa2.51□□□□□ -2.01
VPS35-203ENST00000562420 LYPD3O95274 346 aa2.51□□□□□ -2.01
VPS35-203ENST00000562420 IGKV3-15P01624 115 aa2.51□□□□□ -2.01
VPS35-203ENST00000562420 CD7P09564 240 aa2.51□□□□□ -2.01
VPS35-203ENST00000562420 FAM236CP0DP71 79 aa2.51□□□□□ -2.01
VPS35-203ENST00000562420 GCHFRP30047 84 aa2.51□□□□□ -2.01
VPS35-203ENST00000562420 CCL23P55773 120 aa2.51□□□□□ -2.01
VPS35-203ENST00000562420 ARFRP1Q13795 201 aa2.51□□□□□ -2.01
VPS35-203ENST00000562420 Q1RN00 199 aa2.51□□□□□ -2.01
VPS35-203ENST00000562420 PVRIGQ6DKI7 326 aa2.51□□□□□ -2.01
VPS35-203ENST00000562420 HRCT1Q6UXD1 115 aa2.51□□□□□ -2.01
VPS35-203ENST00000562420 MARCH3Q86UD3 253 aa2.51□□□□□ -2.01
VPS35-203ENST00000562420 RPP25LQ8N5L8 163 aaKnown RBP2.51□□□□□ -2.01
VPS35-203ENST00000562420 RNF182Q8N6D2 247 aa2.51□□□□□ -2.01
VPS35-203ENST00000562420 LINC01555Q8NAE3 123 aa2.51□□□□□ -2.01
VPS35-203ENST00000562420 MDS2Q8NDY4 140 aa2.51□□□□□ -2.01
VPS35-203ENST00000562420 TYMSOSQ8TAI1 123 aa2.51□□□□□ -2.01
VPS35-203ENST00000562420 ITLN1Q8WWA0 313 aa2.51□□□□□ -2.01
VPS35-203ENST00000562420 FAM173AQ9BQD7 235 aa2.51□□□□□ -2.01
VPS35-203ENST00000562420 PRSS27Q9BQR3 290 aa2.51□□□□□ -2.01
VPS35-203ENST00000562420 EMC6Q9BV81 110 aa2.51□□□□□ -2.01
VPS35-203ENST00000562420 TMEM167BQ9NRX6 74 aa2.51□□□□□ -2.01
VPS35-203ENST00000562420 CPAMD8Q8IZJ3 1885 aa2.51□□□□□ -2.01
VPS35-203ENST00000562420 IGHV1-58A0A0C4DH39 117 aa2.5□□□□□ -2.01
VPS35-203ENST00000562420 C5orf63A6NC05 138 aa2.5□□□□□ -2.01
VPS35-203ENST00000562420 OOSP1A8MZH6 123 aa2.5□□□□□ -2.01
VPS35-203ENST00000562420 KLLNB2CW77 178 aa2.5□□□□□ -2.01
VPS35-203ENST00000562420 HBDP02042 147 aa2.5□□□□□ -2.01
VPS35-203ENST00000562420 SSR2P43308 183 aa2.5□□□□□ -2.01
VPS35-203ENST00000562420 INSL3P51460 131 aa2.5□□□□□ -2.01
VPS35-203ENST00000562420 ZNF136P52737 540 aa2.5□□□□□ -2.01
VPS35-203ENST00000562420 HIST1H4AP62805 103 aaKnown RBP2.5□□□□□ -2.01
VPS35-203ENST00000562420 ZNF726P1Q15940 193 aa2.5□□□□□ -2.01
VPS35-203ENST00000562420 FAM120AOSQ5T036 256 aa2.5□□□□□ -2.01
VPS35-203ENST00000562420 C1orf140Q5VVS0 124 aa2.5□□□□□ -2.01
VPS35-203ENST00000562420 FAM19A2Q8N3H0 131 aa2.5□□□□□ -2.01
VPS35-203ENST00000562420 ZNF525Q8N782 197 aa2.5□□□□□ -2.01
VPS35-203ENST00000562420 BORCS8Q96FH0 119 aa2.5□□□□□ -2.01
VPS35-203ENST00000562420 ODF3Q96PU9 254 aa2.5□□□□□ -2.01
VPS35-203ENST00000562420 HIST1H4GQ99525 98 aa2.5□□□□□ -2.01
VPS35-203ENST00000562420 NAA38Q9BRA0 125 aaKnown RBP2.5□□□□□ -2.01
VPS35-203ENST00000562420 AICDAQ9GZX7 198 aa2.5□□□□□ -2.01
VPS35-203ENST00000562420 DEFB127Q9H1M4 99 aa2.5□□□□□ -2.01
VPS35-203ENST00000562420 CXXC4Q9H2H0 198 aa2.5□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms