RNA–Protein interactions for RNA: ENST00000561381.5

USP3-220, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2

Gene USP3, Length 979 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-220ENST00000561381 NUDT15Q9NV35 164 aa8.05□□□□□ -1.12
USP3-220ENST00000561381 CDK2AP2O75956 126 aa8.04□□□□□ -1.12
USP3-220ENST00000561381 NDUFB4O95168 129 aa8.04□□□□□ -1.12
USP3-220ENST00000561381 RPL29P47914 159 aaKnown RBP8.04□□□□□ -1.12
USP3-220ENST00000561381 S100A10P60903 97 aa8.04□□□□□ -1.12
USP3-220ENST00000561381 GUK1Q16774 197 aa8.04□□□□□ -1.12
USP3-220ENST00000561381 CDPF1Q6NVV7 123 aa8.04□□□□□ -1.12
USP3-220ENST00000561381 SPATA12Q7Z6I5 190 aa8.04□□□□□ -1.12
USP3-220ENST00000561381 OR1L4Q8NGR5 311 aa8.04□□□□□ -1.12
USP3-220ENST00000561381 ZNF503Q96F45 646 aa8.04□□□□□ -1.12
USP3-220ENST00000561381 C2orf50Q96LR7 162 aa8.04□□□□□ -1.12
USP3-220ENST00000561381 ODF3Q96PU9 254 aa8.04□□□□□ -1.12
USP3-220ENST00000561381 PYGO2Q9BRQ0 406 aa8.04□□□□□ -1.12
USP3-220ENST00000561381 GSN-AS1Q9NRJ2 163 aa8.04□□□□□ -1.12
USP3-220ENST00000561381 APOBP04114 4563 aaKnown RBP8.04□□□□□ -1.12
USP3-220ENST00000561381 TRBV19A0A075B6N1 114 aa8.03□□□□□ -1.12
USP3-220ENST00000561381 ZNF253O75346 499 aa8.03□□□□□ -1.12
USP3-220ENST00000561381 PYYP10082 97 aa8.03□□□□□ -1.12
USP3-220ENST00000561381 SULT1A1P50225 295 aa8.03□□□□□ -1.12
USP3-220ENST00000561381 BAXQ07812 192 aa8.03□□□□□ -1.12
USP3-220ENST00000561381 CD300CQ08708 224 aa8.03□□□□□ -1.12
USP3-220ENST00000561381 DAZ2Q13117 558 aaKnown RBP8.03□□□□□ -1.12
USP3-220ENST00000561381 IL15RAQ13261 267 aa8.03□□□□□ -1.12
USP3-220ENST00000561381 BTN1A1Q13410 526 aa8.03□□□□□ -1.12
USP3-220ENST00000561381 RAB32Q13637 225 aa8.03□□□□□ -1.12
USP3-220ENST00000561381 GCSAMLQ5JQS6 135 aa8.03□□□□□ -1.12
USP3-220ENST00000561381 C12orf45Q8N5I9 185 aaPredicted RBP8.03□□□□□ -1.12
USP3-220ENST00000561381 TMEM252Q8N6L7 170 aa8.03□□□□□ -1.12
USP3-220ENST00000561381 C11orf72Q8NBR9 251 aa8.03□□□□□ -1.12
USP3-220ENST00000561381 VSIG2Q96IQ7 327 aa8.03□□□□□ -1.12
USP3-220ENST00000561381 PFDN5Q99471 154 aa8.03□□□□□ -1.12
USP3-220ENST00000561381 UPK3BQ9BT76 320 aa8.03□□□□□ -1.12
USP3-220ENST00000561381 AGPAT4-IT1Q9H0P7 198 aa8.03□□□□□ -1.12
USP3-220ENST00000561381 Q9H3A6 140 aa8.03□□□□□ -1.12
USP3-220ENST00000561381 LYRM2Q9NU23 88 aaPredicted RBP8.03□□□□□ -1.12
USP3-220ENST00000561381 C7orf71A4D174 169 aa8.02□□□□□ -1.13
USP3-220ENST00000561381 KLLNB2CW77 178 aa8.02□□□□□ -1.13
USP3-220ENST00000561381 ZNF324O75467 553 aaPredicted RBP8.02□□□□□ -1.13
USP3-220ENST00000561381 SLC25A5P05141 298 aaKnown RBP8.02□□□□□ -1.13
USP3-220ENST00000561381 FGF7P21781 194 aa8.02□□□□□ -1.13
USP3-220ENST00000561381 S100A11P31949 105 aa8.02□□□□□ -1.13
USP3-220ENST00000561381 KRTAP10-2P60368 255 aa8.02□□□□□ -1.13
USP3-220ENST00000561381 Q6ZQT7 251 aa8.02□□□□□ -1.13
USP3-220ENST00000561381 EXOC3-AS1Q8N2X6 119 aa8.02□□□□□ -1.13
USP3-220ENST00000561381 MAPKAPK5-AS1Q8N8E1 139 aa8.02□□□□□ -1.13
USP3-220ENST00000561381 BLNKQ8WV28 456 aa8.02□□□□□ -1.13
USP3-220ENST00000561381 MRPL53Q96EL3 112 aaKnown RBP8.02□□□□□ -1.13
USP3-220ENST00000561381 FAM19A4Q96LR4 140 aa8.02□□□□□ -1.13
USP3-220ENST00000561381 KRTAP4-7Q9BYR0 210 aa8.02□□□□□ -1.13
USP3-220ENST00000561381 MRPS16Q9Y3D3 137 aaKnown RBP8.02□□□□□ -1.13
USP3-220ENST00000561381 TRGV2A0A075B6R0 118 aa8.01□□□□□ -1.13
USP3-220ENST00000561381 IGKV2-40A0A087WW87 121 aaPredicted RBP8.01□□□□□ -1.13
USP3-220ENST00000561381 A0A096LPF7 62 aa8.01□□□□□ -1.13
USP3-220ENST00000561381 TRGV1A0A0A0MS02 117 aa8.01□□□□□ -1.13
USP3-220ENST00000561381 H3BNG1 76 aa8.01□□□□□ -1.13
USP3-220ENST00000561381 IGKV2D-40P01614 121 aaPredicted RBP8.01□□□□□ -1.13
USP3-220ENST00000561381 HIST1H1EP10412 219 aaKnown RBP8.01□□□□□ -1.13
USP3-220ENST00000561381 PVALBP20472 110 aaPredicted RBP8.01□□□□□ -1.13
USP3-220ENST00000561381 RNASE4P34096 147 aaKnown RBP8.01□□□□□ -1.13
USP3-220ENST00000561381 TTC32Q5I0X7 151 aa8.01□□□□□ -1.13
USP3-220ENST00000561381 LCE1DQ5T752 114 aa8.01□□□□□ -1.13
USP3-220ENST00000561381 CHAC2Q8WUX2 184 aa8.01□□□□□ -1.13
USP3-220ENST00000561381 TMEM14CQ9P0S9 112 aa8.01□□□□□ -1.13
USP3-220ENST00000561381 KLF12Q9Y4X4 402 aa8.01□□□□□ -1.13
USP3-220ENST00000561381 DNAH5Q8TE73 4624 aa8□□□□□ -1.13
USP3-220ENST00000561381 HBG1P69891 147 aa8□□□□□ -1.13
USP3-220ENST00000561381 HBG2P69892 147 aa8□□□□□ -1.13
USP3-220ENST00000561381 PRR9Q5T870 116 aa8□□□□□ -1.13
USP3-220ENST00000561381 STX12Q86Y82 276 aa8□□□□□ -1.13
USP3-220ENST00000561381 ZFAND2AQ8N6M9 145 aa8□□□□□ -1.13
USP3-220ENST00000561381 THAP6Q8TBB0 222 aa8□□□□□ -1.13
USP3-220ENST00000561381 LINC00477Q96M19 166 aa8□□□□□ -1.13
USP3-220ENST00000561381 VGLL1Q99990 258 aa8□□□□□ -1.13
USP3-220ENST00000561381 SLC25A2Q9BXI2 301 aa8□□□□□ -1.13
USP3-220ENST00000561381 NPCDR1Q9BY65 106 aa8□□□□□ -1.13
USP3-220ENST00000561381 GPN1Q9HCN4 374 aaPredicted RBP8□□□□□ -1.13
USP3-220ENST00000561381 TP53TG3Q9ULZ0 132 aa8□□□□□ -1.13
USP3-220ENST00000561381 FUT9Q9Y231 359 aa8□□□□□ -1.13
USP3-220ENST00000561381 TIMM9Q9Y5J7 89 aa8□□□□□ -1.13
USP3-220ENST00000561381 A0A1W2PPQ1 181 aa7.99□□□□□ -1.13
USP3-220ENST00000561381 SPINK4O60575 86 aa7.99□□□□□ -1.13
USP3-220ENST00000561381 IGHV3-53P01767 116 aa7.99□□□□□ -1.13
USP3-220ENST00000561381 NHLH2Q02577 135 aa7.99□□□□□ -1.13
USP3-220ENST00000561381 PDE6HQ13956 83 aa7.99□□□□□ -1.13
USP3-220ENST00000561381 ICAM4Q14773 271 aa7.99□□□□□ -1.13
USP3-220ENST00000561381 ANXA2RQ3ZCQ2 193 aa7.99□□□□□ -1.13
USP3-220ENST00000561381 FAM122CQ6P4D5 195 aa7.99□□□□□ -1.13
USP3-220ENST00000561381 MIR17HGQ75NE6 70 aa7.99□□□□□ -1.13
USP3-220ENST00000561381 EIF4E3Q8N5X7 224 aaKnown RBP7.99□□□□□ -1.13
USP3-220ENST00000561381 ZNF680Q8NEM1 530 aa7.99□□□□□ -1.13
USP3-220ENST00000561381 FAM167A-AS1Q96KT0 104 aa7.99□□□□□ -1.13
USP3-220ENST00000561381 C18orf15Q96N68 181 aa7.99□□□□□ -1.13
USP3-220ENST00000561381 LINC00467Q9BRT7 94 aa7.99□□□□□ -1.13
USP3-220ENST00000561381 PRELID1Q9Y255 219 aa7.99□□□□□ -1.13
USP3-220ENST00000561381 MPDU1O75352 247 aa7.98□□□□□ -1.13
USP3-220ENST00000561381 SIX6O95475 246 aa7.98□□□□□ -1.13
USP3-220ENST00000561381 GPX1P07203 203 aa7.98□□□□□ -1.13
USP3-220ENST00000561381 CRISP2P16562 243 aa7.98□□□□□ -1.13
USP3-220ENST00000561381 FUSP35637 526 aaKnown RBP eCLIP7.98□□□□□ -1.13
USP3-220ENST00000561381 TCL1AP56279 114 aa7.98□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 70.4 ms