RNA–Protein interactions for RNA: ENST00000557548.1

TRAV28-201, Transcript of T cell receptor alpha variable 28 (pseudogene), humanhuman

BASIC

Gene TRAV28, Length 323 nt, Biotype TR V pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV28-201ENST00000557548 MRPL57Q9BQC6 102 aaKnown RBP1.79□□□□□ -2.12
TRAV28-201ENST00000557548 MRPL32Q9BYC8 188 aaKnown RBP1.79□□□□□ -2.12
TRAV28-201ENST00000557548 RNF11Q9Y3C5 154 aa1.79□□□□□ -2.12
TRAV28-201ENST00000557548 V9GYS6 101 aa1.79□□□□□ -2.12
TRAV28-201ENST00000557548 ANKARQ7Z5J8 1434 aa1.79□□□□□ -2.12
TRAV28-201ENST00000557548 LAMB4A4D0S4 1761 aa1.79□□□□□ -2.12
TRAV28-201ENST00000557548 MAST2Q6P0Q8 1798 aa1.79□□□□□ -2.12
TRAV28-201ENST00000557548 ZSWIM8A7E2V4 1837 aa1.79□□□□□ -2.12
TRAV28-201ENST00000557548 ALPK3Q96L96 1907 aa1.79□□□□□ -2.12
TRAV28-201ENST00000557548 SCN9AQ15858 1988 aa1.79□□□□□ -2.12
TRAV28-201ENST00000557548 ARID1AO14497 2285 aa1.79□□□□□ -2.12
TRAV28-201ENST00000557548 CEP350Q5VT06 3117 aa1.78□□□□□ -2.12
TRAV28-201ENST00000557548 DSCAML1Q8TD84 2053 aa1.78□□□□□ -2.12
TRAV28-201ENST00000557548 NUP205Q92621 2012 aa1.78□□□□□ -2.12
TRAV28-201ENST00000557548 THADAQ6YHU6 1953 aa1.78□□□□□ -2.12
TRAV28-201ENST00000557548 DDX60Q8IY21 1712 aaKnown RBP1.78□□□□□ -2.12
TRAV28-201ENST00000557548 COL4A1P02462 1669 aa1.78□□□□□ -2.12
TRAV28-201ENST00000557548 NSD3Q9BZ95 1437 aa1.78□□□□□ -2.12
TRAV28-201ENST00000557548 IGKV1-9A0A0C4DH69 117 aa1.78□□□□□ -2.12
TRAV28-201ENST00000557548 A0A0D9SEW6 157 aa1.78□□□□□ -2.12
TRAV28-201ENST00000557548 A0A0G2JMM0 328 aa1.78□□□□□ -2.12
TRAV28-201ENST00000557548 TRBV27A0A0K0K1C4 114 aa1.78□□□□□ -2.12
TRAV28-201ENST00000557548 FAM236AA0A1B0GUQ0 79 aa1.78□□□□□ -2.12
TRAV28-201ENST00000557548 FAM236BA0A1B0GV22 79 aa1.78□□□□□ -2.12
TRAV28-201ENST00000557548 SPAARA0A1B0GVQ0 90 aa1.78□□□□□ -2.12
TRAV28-201ENST00000557548 A0A1W2PPB8 328 aa1.78□□□□□ -2.12
TRAV28-201ENST00000557548 C7orf71A4D174 169 aa1.78□□□□□ -2.12
TRAV28-201ENST00000557548 A8MWP6 167 aa1.78□□□□□ -2.12
TRAV28-201ENST00000557548 KIR3DP1A8MWS1 328 aa1.78□□□□□ -2.12
TRAV28-201ENST00000557548 FNDC10F2Z333 226 aa1.78□□□□□ -2.12
TRAV28-201ENST00000557548 LEPROTO15243 131 aa1.78□□□□□ -2.12
TRAV28-201ENST00000557548 ZNF14P17017 642 aaPredicted RBP1.78□□□□□ -2.12
TRAV28-201ENST00000557548 FOXA1P55317 472 aa1.78□□□□□ -2.12
TRAV28-201ENST00000557548 ARPP19P56211 112 aa1.78□□□□□ -2.12
TRAV28-201ENST00000557548 TSPEAR-AS2P59090 65 aa1.78□□□□□ -2.12
TRAV28-201ENST00000557548 TMEM258P61165 79 aa1.78□□□□□ -2.12
TRAV28-201ENST00000557548 LSM3P62310 102 aaKnown RBP1.78□□□□□ -2.12
TRAV28-201ENST00000557548 RPL18Q07020 188 aaKnown RBP1.78□□□□□ -2.12
TRAV28-201ENST00000557548 HSD52Q0P140 79 aa1.78□□□□□ -2.12
TRAV28-201ENST00000557548 DIAPH2-AS1Q14236 149 aa1.78□□□□□ -2.12
TRAV28-201ENST00000557548 KRTAP25-1Q3LHN0 102 aa1.78□□□□□ -2.12
TRAV28-201ENST00000557548 C22orf39Q6P5X5 142 aa1.78□□□□□ -2.12
TRAV28-201ENST00000557548 IZUMO2Q6UXV1 221 aa1.78□□□□□ -2.12
TRAV28-201ENST00000557548 ZNF767PQ75MW2 155 aa1.78□□□□□ -2.12
TRAV28-201ENST00000557548 MIR17HGQ75NE6 70 aa1.78□□□□□ -2.12
TRAV28-201ENST00000557548 PHF5AQ7RTV0 110 aaKnown RBP1.78□□□□□ -2.12
TRAV28-201ENST00000557548 RPS19BP1Q86WX3 136 aaKnown RBP1.78□□□□□ -2.12
TRAV28-201ENST00000557548 ATOH7Q8N100 152 aa1.78□□□□□ -2.12
TRAV28-201ENST00000557548 C9orf62Q8N4C0 152 aa1.78□□□□□ -2.12
TRAV28-201ENST00000557548 RPRMLQ8N4K4 120 aa1.78□□□□□ -2.12
TRAV28-201ENST00000557548 PACRGLQ8N7B6 248 aa1.78□□□□□ -2.12
TRAV28-201ENST00000557548 COPS9Q8WXC6 57 aa1.78□□□□□ -2.12
TRAV28-201ENST00000557548 PRELID3AQ96N28 172 aa1.78□□□□□ -2.12
TRAV28-201ENST00000557548 MCEEQ96PE7 176 aa1.78□□□□□ -2.12
TRAV28-201ENST00000557548 SCGB3A1Q96QR1 104 aa1.78□□□□□ -2.12
TRAV28-201ENST00000557548 HIST1H2BLQ99880 126 aa1.78□□□□□ -2.12
TRAV28-201ENST00000557548 MIEN1Q9BRT3 115 aa1.78□□□□□ -2.12
TRAV28-201ENST00000557548 SNRNP25Q9BV90 132 aaKnown RBP1.78□□□□□ -2.12
TRAV28-201ENST00000557548 SNHG12Q9BXW3 62 aa1.78□□□□□ -2.12
TRAV28-201ENST00000557548 DUSP21Q9H596 190 aa1.78□□□□□ -2.12
TRAV28-201ENST00000557548 OSTCQ9NRP0 149 aa1.78□□□□□ -2.12
TRAV28-201ENST00000557548 SCP2D1Q9UJQ7 156 aa1.78□□□□□ -2.12
TRAV28-201ENST00000557548 ZNF443Q9Y2A4 671 aaPredicted RBP1.78□□□□□ -2.12
TRAV28-201ENST00000557548 MPC1Q9Y5U8 109 aa1.78□□□□□ -2.12
TRAV28-201ENST00000557548 PCNTO95613 3336 aa1.78□□□□□ -2.12
TRAV28-201ENST00000557548 ATG2BQ96BY7 2078 aa1.78□□□□□ -2.13
TRAV28-201ENST00000557548 MYH13Q9UKX3 1938 aa1.78□□□□□ -2.13
TRAV28-201ENST00000557548 OBSL1O75147 1896 aa1.77□□□□□ -2.13
TRAV28-201ENST00000557548 MYO5AQ9Y4I1 1855 aaKnown RBP1.77□□□□□ -2.13
TRAV28-201ENST00000557548 SIPA1L1O43166 1804 aa1.77□□□□□ -2.13
TRAV28-201ENST00000557548 TNRC18O15417 2968 aaPredicted RBP1.77□□□□□ -2.13
TRAV28-201ENST00000557548 RBBP6Q7Z6E9 1792 aaKnown RBP1.77□□□□□ -2.13
TRAV28-201ENST00000557548 CPSF1Q10570 1443 aaKnown RBP1.77□□□□□ -2.13
TRAV28-201ENST00000557548 KTN1Q86UP2 1357 aaKnown RBP1.77□□□□□ -2.13
TRAV28-201ENST00000557548 PNMA8CA0A1B0GUJ8 204 aa1.77□□□□□ -2.13
TRAV28-201ENST00000557548 GRIFINA4D1Z8 144 aa1.77□□□□□ -2.13
TRAV28-201ENST00000557548 ZNF727A8MUV8 499 aa1.77□□□□□ -2.13
TRAV28-201ENST00000557548 UQCRQO14949 82 aa1.77□□□□□ -2.13
TRAV28-201ENST00000557548 TNFP01375 233 aa1.77□□□□□ -2.13
TRAV28-201ENST00000557548 IGHV3-7P01780 117 aa1.77□□□□□ -2.13
TRAV28-201ENST00000557548 TCRAP04437 139 aa1.77□□□□□ -2.13
TRAV28-201ENST00000557548 SLC25A16P16260 332 aa1.77□□□□□ -2.13
TRAV28-201ENST00000557548 CRHBPP24387 322 aa1.77□□□□□ -2.13
TRAV28-201ENST00000557548 HLA-DMBP28068 263 aa1.77□□□□□ -2.13
TRAV28-201ENST00000557548 RNASE4P34096 147 aaKnown RBP1.77□□□□□ -2.13
TRAV28-201ENST00000557548 FOXA3P55318 350 aaPredicted RBP1.77□□□□□ -2.13
TRAV28-201ENST00000557548 FXYD7P58549 80 aa1.77□□□□□ -2.13
TRAV28-201ENST00000557548 KRTAP12-2P59991 146 aa1.77□□□□□ -2.13
TRAV28-201ENST00000557548 S100A10P60903 97 aa1.77□□□□□ -2.13
TRAV28-201ENST00000557548 KRTAP13-3Q3SY46 172 aa1.77□□□□□ -2.13
TRAV28-201ENST00000557548 TMEM155Q4W5P6 130 aa1.77□□□□□ -2.13
TRAV28-201ENST00000557548 EIF5AL1Q6IS14 154 aaKnown RBP1.77□□□□□ -2.13
TRAV28-201ENST00000557548 SMIM5Q71RC9 77 aa1.77□□□□□ -2.13
TRAV28-201ENST00000557548 SPATA12Q7Z6I5 190 aa1.77□□□□□ -2.13
TRAV28-201ENST00000557548 GKN2Q86XP6 184 aa1.77□□□□□ -2.13
TRAV28-201ENST00000557548 LYPD6Q86Y78 171 aa1.77□□□□□ -2.13
TRAV28-201ENST00000557548 BPIFA4PQ86YQ2 179 aa1.77□□□□□ -2.13
TRAV28-201ENST00000557548 C4orf33Q8N1A6 199 aa1.77□□□□□ -2.13
TRAV28-201ENST00000557548 MORN4Q8NDC4 146 aa1.77□□□□□ -2.13
TRAV28-201ENST00000557548 C1orf64Q8NEQ6 169 aa1.77□□□□□ -2.13
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms