RNA–Protein interactions for RNA: ENST00000556689.5

SHMT2-223, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 768 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-223ENST00000556689 ZNF471Q9BX82 626 aaPredicted RBP8.76□□□□□ -1.01
SHMT2-223ENST00000556689 NPVFQ9HCQ7 196 aa8.76□□□□□ -1.01
SHMT2-223ENST00000556689 A0A0J9YY99 117 aa8.75□□□□□ -1.01
SHMT2-223ENST00000556689 FGF7P21781 194 aa8.75□□□□□ -1.01
SHMT2-223ENST00000556689 S100A7AQ86SG5 101 aa8.75□□□□□ -1.01
SHMT2-223ENST00000556689 C9orf62Q8N4C0 152 aa8.75□□□□□ -1.01
SHMT2-223ENST00000556689 RNASE8Q8TDE3 154 aaKnown RBP8.75□□□□□ -1.01
SHMT2-223ENST00000556689 TMEM263Q8WUH6 116 aaKnown RBP8.75□□□□□ -1.01
SHMT2-223ENST00000556689 ZNF586Q9NXT0 402 aa8.75□□□□□ -1.01
SHMT2-223ENST00000556689 MRPS16Q9Y3D3 137 aaKnown RBP8.75□□□□□ -1.01
SHMT2-223ENST00000556689 H3BNG1 76 aa8.74□□□□□ -1.01
SHMT2-223ENST00000556689 H7BYZ3 331 aa8.74□□□□□ -1.01
SHMT2-223ENST00000556689 RPL7P18124 248 aaKnown RBP8.74□□□□□ -1.01
SHMT2-223ENST00000556689 CXCL2P19875 107 aa8.74□□□□□ -1.01
SHMT2-223ENST00000556689 CDKN1BP46527 198 aa8.74□□□□□ -1.01
SHMT2-223ENST00000556689 NKX2-5P52952 324 aaPredicted RBP8.74□□□□□ -1.01
SHMT2-223ENST00000556689 SELENOTP62341 195 aa8.74□□□□□ -1.01
SHMT2-223ENST00000556689 PSG3Q16557 428 aa8.74□□□□□ -1.01
SHMT2-223ENST00000556689 VWC2Q2TAL6 325 aa8.74□□□□□ -1.01
SHMT2-223ENST00000556689 SLC51BQ86UW2 128 aa8.74□□□□□ -1.01
SHMT2-223ENST00000556689 CCDC28AQ8IWP9 274 aa8.74□□□□□ -1.01
SHMT2-223ENST00000556689 LYPD1Q8N2G4 141 aa8.74□□□□□ -1.01
SHMT2-223ENST00000556689 LRRC20Q8TCA0 184 aa8.74□□□□□ -1.01
SHMT2-223ENST00000556689 PARD6GQ9BYG4 376 aaPredicted RBP8.74□□□□□ -1.01
SHMT2-223ENST00000556689 FAT1Q14517 4588 aa8.74□□□□□ -1.01
SHMT2-223ENST00000556689 GAGE12BA1L429 117 aa8.73□□□□□ -1.01
SHMT2-223ENST00000556689 PMS2P5A8MQ11 134 aa8.73□□□□□ -1.01
SHMT2-223ENST00000556689 PRSS46E5RG02 174 aa8.73□□□□□ -1.01
SHMT2-223ENST00000556689 EREGO14944 169 aa8.73□□□□□ -1.01
SHMT2-223ENST00000556689 GAGE7O76087 117 aa8.73□□□□□ -1.01
SHMT2-223ENST00000556689 GAGE12FP0CL80 117 aa8.73□□□□□ -1.01
SHMT2-223ENST00000556689 GAGE12GP0CL81 117 aa8.73□□□□□ -1.01
SHMT2-223ENST00000556689 GAGE12IP0CL82 117 aa8.73□□□□□ -1.01
SHMT2-223ENST00000556689 HOXA5P20719 270 aa8.73□□□□□ -1.01
SHMT2-223ENST00000556689 XGP55808 180 aa8.73□□□□□ -1.01
SHMT2-223ENST00000556689 OPCMLQ14982 345 aa8.73□□□□□ -1.01
SHMT2-223ENST00000556689 LINC00612Q8N6U2 182 aa8.73□□□□□ -1.01
SHMT2-223ENST00000556689 SHANK2-AS3Q9BTD1 123 aa8.73□□□□□ -1.01
SHMT2-223ENST00000556689 H3BRN7 92 aa8.72□□□□□ -1.01
SHMT2-223ENST00000556689 HYPMO75409 117 aa8.72□□□□□ -1.01
SHMT2-223ENST00000556689 CAMLGP49069 296 aa8.72□□□□□ -1.01
SHMT2-223ENST00000556689 LINC00315P59091 139 aa8.72□□□□□ -1.01
SHMT2-223ENST00000556689 LGALSLQ3ZCW2 172 aaPredicted RBP8.72□□□□□ -1.01
SHMT2-223ENST00000556689 C20orf144Q9BQM9 153 aa8.72□□□□□ -1.01
SHMT2-223ENST00000556689 NPCDR1Q9BY65 106 aa8.72□□□□□ -1.01
SHMT2-223ENST00000556689 WDR61Q9GZS3 305 aaKnown RBP8.72□□□□□ -1.01
SHMT2-223ENST00000556689 RNF24Q9Y225 148 aa8.72□□□□□ -1.01
SHMT2-223ENST00000556689 HIGD1AQ9Y241 93 aa8.72□□□□□ -1.01
SHMT2-223ENST00000556689 WDR83OSQ9Y284 106 aa8.72□□□□□ -1.01
SHMT2-223ENST00000556689 A0A087X0K7 114 aa8.71□□□□□ -1.02
SHMT2-223ENST00000556689 ARL16Q0P5N6 197 aa8.71□□□□□ -1.02
SHMT2-223ENST00000556689 RPL7L1Q6DKI1 246 aaKnown RBP8.71□□□□□ -1.02
SHMT2-223ENST00000556689 Q6ZRG5 221 aa8.71□□□□□ -1.02
SHMT2-223ENST00000556689 Q6ZRN7 208 aaPredicted RBP8.71□□□□□ -1.02
SHMT2-223ENST00000556689 CYP2G1PQ6ZSU1 146 aa8.71□□□□□ -1.02
SHMT2-223ENST00000556689 HSD17B11Q8NBQ5 300 aa8.71□□□□□ -1.02
SHMT2-223ENST00000556689 STOML3Q8TAV4 291 aa8.71□□□□□ -1.02
SHMT2-223ENST00000556689 FRZBQ92765 325 aa8.71□□□□□ -1.02
SHMT2-223ENST00000556689 RPUSD4Q96CM3 377 aaKnown RBP8.71□□□□□ -1.02
SHMT2-223ENST00000556689 PFDN5Q99471 154 aa8.71□□□□□ -1.02
SHMT2-223ENST00000556689 TIMM9Q9Y5J7 89 aa8.71□□□□□ -1.02
SHMT2-223ENST00000556689 SNURFLB1AK76 121 aa8.7□□□□□ -1.02
SHMT2-223ENST00000556689 AGPAT2O15120 278 aa8.7□□□□□ -1.02
SHMT2-223ENST00000556689 MBP02144 154 aa8.7□□□□□ -1.02
SHMT2-223ENST00000556689 OR5G3P0C626 314 aa8.7□□□□□ -1.02
SHMT2-223ENST00000556689 PRB4P10163 310 aaPredicted RBP8.7□□□□□ -1.02
SHMT2-223ENST00000556689 FUSP35637 526 aaKnown RBP eCLIP8.7□□□□□ -1.02
SHMT2-223ENST00000556689 AKR1C8PQ5T2L2 129 aa8.7□□□□□ -1.02
SHMT2-223ENST00000556689 PXDC1Q5TGL8 231 aa8.7□□□□□ -1.02
SHMT2-223ENST00000556689 Q5VSD8 79 aa8.7□□□□□ -1.02
SHMT2-223ENST00000556689 CDPF1Q6NVV7 123 aa8.7□□□□□ -1.02
SHMT2-223ENST00000556689 PHYHIPLQ96FC7 376 aa8.7□□□□□ -1.02
SHMT2-223ENST00000556689 PSMG3Q9BT73 122 aaPredicted RBP8.7□□□□□ -1.02
SHMT2-223ENST00000556689 SIVA1O15304 175 aa8.69□□□□□ -1.02
SHMT2-223ENST00000556689 COX7A2P2O60397 106 aa8.69□□□□□ -1.02
SHMT2-223ENST00000556689 IFNA7P01567 189 aa8.69□□□□□ -1.02
SHMT2-223ENST00000556689 LINC00869P0C866 280 aa8.69□□□□□ -1.02
SHMT2-223ENST00000556689 PLP1P60201 277 aa8.69□□□□□ -1.02
SHMT2-223ENST00000556689 ERVFC1-1P60608 527 aa8.69□□□□□ -1.02
SHMT2-223ENST00000556689 SERF2P84101 59 aa8.69□□□□□ -1.02
SHMT2-223ENST00000556689 KIR3DS1Q14943 382 aa8.69□□□□□ -1.02
SHMT2-223ENST00000556689 ACOT6Q3I5F7 207 aaPredicted RBP8.69□□□□□ -1.02
SHMT2-223ENST00000556689 OR1L4Q8NGR5 311 aa8.69□□□□□ -1.02
SHMT2-223ENST00000556689 PXMP4Q9Y6I8 212 aa8.69□□□□□ -1.02
SHMT2-223ENST00000556689 A0A096LPF7 62 aa8.68□□□□□ -1.02
SHMT2-223ENST00000556689 UMAD1C9J7I0 102 aa8.68□□□□□ -1.02
SHMT2-223ENST00000556689 SEC11BP0C7V7 166 aa8.68□□□□□ -1.02
SHMT2-223ENST00000556689 ATP6V0CP27449 155 aa8.68□□□□□ -1.02
SHMT2-223ENST00000556689 RPL29P47914 159 aaKnown RBP8.68□□□□□ -1.02
SHMT2-223ENST00000556689 FFAR4Q5NUL3 377 aa8.68□□□□□ -1.02
SHMT2-223ENST00000556689 OR2G3Q8NGZ4 309 aa8.68□□□□□ -1.02
SHMT2-223ENST00000556689 VSIG2Q96IQ7 327 aa8.68□□□□□ -1.02
SHMT2-223ENST00000556689 MGST2Q99735 147 aa8.68□□□□□ -1.02
SHMT2-223ENST00000556689 TEX46H3BTG2 121 aa8.67□□□□□ -1.02
SHMT2-223ENST00000556689 RAB5CP51148 216 aa8.67□□□□□ -1.02
SHMT2-223ENST00000556689 DAZ2Q13117 558 aaKnown RBP8.67□□□□□ -1.02
SHMT2-223ENST00000556689 GFI1BQ5VTD9 330 aa8.67□□□□□ -1.02
SHMT2-223ENST00000556689 TMPRSS5Q9H3S3 457 aa8.67□□□□□ -1.02
SHMT2-223ENST00000556689 WFDC1Q9HC57 220 aa8.67□□□□□ -1.02
SHMT2-223ENST00000556689 ZNF331Q9NQX6 463 aaPredicted RBP8.67□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 104.4 ms