RNA–Protein interactions for RNA: ENST00000555116.5

SHMT2-217, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,885 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-217ENST00000555116 TRAV8-2A0A0B4J237 113 aa10.42□□□□□ -0.74
SHMT2-217ENST00000555116 DEFB1P60022 68 aa10.42□□□□□ -0.74
SHMT2-217ENST00000555116 SNRPEP62304 92 aaKnown RBP10.42□□□□□ -0.74
SHMT2-217ENST00000555116 SPATA31B1PQ5VZV4 182 aa10.42□□□□□ -0.74
SHMT2-217ENST00000555116 C16orf92Q96LL3 132 aa10.42□□□□□ -0.74
SHMT2-217ENST00000555116 YPEL4Q96NS1 127 aa10.42□□□□□ -0.74
SHMT2-217ENST00000555116 SMIM7Q9BQ49 75 aa10.42□□□□□ -0.74
SHMT2-217ENST00000555116 TP53TG1Q9Y2A0 90 aa10.42□□□□□ -0.74
SHMT2-217ENST00000555116 TRAV5A0A0B4J249 113 aa10.42□□□□□ -0.74
SHMT2-217ENST00000555116 C5orf52A6NGY3 159 aa10.42□□□□□ -0.74
SHMT2-217ENST00000555116 C11orf94C9JXX5 98 aa10.42□□□□□ -0.74
SHMT2-217ENST00000555116 DEFB135Q30KP9 77 aa10.42□□□□□ -0.74
SHMT2-217ENST00000555116 H3BMM0 161 aa10.41□□□□□ -0.74
SHMT2-217ENST00000555116 SPRY2O43597 315 aa10.41□□□□□ -0.74
SHMT2-217ENST00000555116 GIG44P09565 113 aaPredicted RBP10.41□□□□□ -0.74
SHMT2-217ENST00000555116 HLA-DRB4P13762 266 aa10.41□□□□□ -0.74
SHMT2-217ENST00000555116 UBE2G2P60604 165 aa10.41□□□□□ -0.74
SHMT2-217ENST00000555116 GDF5OSQ5U4N7 250 aa10.41□□□□□ -0.74
SHMT2-217ENST00000555116 RPUSD4Q96CM3 377 aaKnown RBP10.41□□□□□ -0.74
SHMT2-217ENST00000555116 RNF183Q96D59 192 aa10.41□□□□□ -0.74
SHMT2-217ENST00000555116 EDA2RQ9HAV5 297 aa10.41□□□□□ -0.74
SHMT2-217ENST00000555116 NAT8Q9UHE5 227 aa10.41□□□□□ -0.74
SHMT2-217ENST00000555116 HLA-DRB4X5D2U9 266 aa10.41□□□□□ -0.74
SHMT2-217ENST00000555116 RAB5AP20339 215 aa10.4□□□□□ -0.74
SHMT2-217ENST00000555116 GCHFRP30047 84 aa10.4□□□□□ -0.74
SHMT2-217ENST00000555116 TMEM241Q24JQ0 296 aa10.4□□□□□ -0.74
SHMT2-217ENST00000555116 ZNF674Q2M3X9 581 aa10.4□□□□□ -0.74
SHMT2-217ENST00000555116 IGFL4Q6B9Z1 124 aa10.4□□□□□ -0.74
SHMT2-217ENST00000555116 FOXI2Q6ZQN5 318 aa10.4□□□□□ -0.74
SHMT2-217ENST00000555116 BPIFA4PQ86YQ2 179 aa10.4□□□□□ -0.74
SHMT2-217ENST00000555116 PARLQ9H300 379 aa10.4□□□□□ -0.74
SHMT2-217ENST00000555116 CXorf65A6NEN9 183 aa10.4□□□□□ -0.75
SHMT2-217ENST00000555116 PDE6DO43924 150 aa10.4□□□□□ -0.75
SHMT2-217ENST00000555116 IGLC2P0DOY2 106 aa10.4□□□□□ -0.75
SHMT2-217ENST00000555116 ATP5G3P48201 142 aa10.4□□□□□ -0.75
SHMT2-217ENST00000555116 FAM78BQ5VT40 261 aa10.4□□□□□ -0.75
SHMT2-217ENST00000555116 CST9LP1Q5W188 147 aa10.4□□□□□ -0.75
SHMT2-217ENST00000555116 MORN3Q6PF18 240 aaPredicted RBP10.4□□□□□ -0.75
SHMT2-217ENST00000555116 FUT9Q9Y231 359 aa10.4□□□□□ -0.75
SHMT2-217ENST00000555116 CA1P00915 261 aaPredicted RBP10.39□□□□□ -0.75
SHMT2-217ENST00000555116 MIR17HGQ75NE6 70 aa10.39□□□□□ -0.75
SHMT2-217ENST00000555116 RNF182Q8N6D2 247 aa10.39□□□□□ -0.75
SHMT2-217ENST00000555116 TXNDC17Q9BRA2 123 aa10.39□□□□□ -0.75
SHMT2-217ENST00000555116 TMEM242Q9NWH2 141 aa10.39□□□□□ -0.75
SHMT2-217ENST00000555116 F6UB75 175 aa10.38□□□□□ -0.75
SHMT2-217ENST00000555116 SNRPCP09234 159 aaKnown RBP10.38□□□□□ -0.75
SHMT2-217ENST00000555116 HLA-DMBP28068 263 aa10.38□□□□□ -0.75
SHMT2-217ENST00000555116 A0A0J9YX75 114 aa10.38□□□□□ -0.75
SHMT2-217ENST00000555116 F6UZH7 168 aa10.38□□□□□ -0.75
SHMT2-217ENST00000555116 RPL23P62829 140 aaKnown RBP10.38□□□□□ -0.75
SHMT2-217ENST00000555116 ELOBQ15370 118 aa10.38□□□□□ -0.75
SHMT2-217ENST00000555116 ADIRFQ15847 76 aa10.38□□□□□ -0.75
SHMT2-217ENST00000555116 FAM167A-AS1Q96KT0 104 aa10.38□□□□□ -0.75
SHMT2-217ENST00000555116 CLUHP3Q96NS8 147 aa10.38□□□□□ -0.75
SHMT2-217ENST00000555116 ZNF331Q9NQX6 463 aaPredicted RBP10.38□□□□□ -0.75
SHMT2-217ENST00000555116 TMEM14CQ9P0S9 112 aa10.38□□□□□ -0.75
SHMT2-217ENST00000555116 YTHDF2Q9Y5A9 579 aaKnown RBP10.38□□□□□ -0.75
SHMT2-217ENST00000555116 H3BTX0 84 aa10.37□□□□□ -0.75
SHMT2-217ENST00000555116 SLC17A3O00476 420 aa10.37□□□□□ -0.75
SHMT2-217ENST00000555116 S100PP25815 95 aa10.37□□□□□ -0.75
SHMT2-217ENST00000555116 SLC25A2Q9BXI2 301 aa10.37□□□□□ -0.75
SHMT2-217ENST00000555116 CTDSP1Q9GZU7 261 aa10.37□□□□□ -0.75
SHMT2-217ENST00000555116 A8MTW9 85 aa10.36□□□□□ -0.75
SHMT2-217ENST00000555116 NDUFB4O95168 129 aa10.36□□□□□ -0.75
SHMT2-217ENST00000555116 FABP9Q0Z7S8 132 aa10.36□□□□□ -0.75
SHMT2-217ENST00000555116 PSG3Q16557 428 aa10.36□□□□□ -0.75
SHMT2-217ENST00000555116 EBLN2Q6P2I7 272 aa10.36□□□□□ -0.75
SHMT2-217ENST00000555116 SLC50A1Q9BRV3 221 aa10.36□□□□□ -0.75
SHMT2-217ENST00000555116 MRPL32Q9BYC8 188 aaKnown RBP10.36□□□□□ -0.75
SHMT2-217ENST00000555116 OR51M1Q9H341 326 aa10.36□□□□□ -0.75
SHMT2-217ENST00000555116 ZNF586Q9NXT0 402 aa10.36□□□□□ -0.75
SHMT2-217ENST00000555116 URGCP-MRPS24S4R325 110 aa10.36□□□□□ -0.75
SHMT2-217ENST00000555116 DNAH7Q8WXX0 4024 aa10.36□□□□□ -0.75
SHMT2-217ENST00000555116 IGKV3-20P01619 116 aa10.36□□□□□ -0.75
SHMT2-217ENST00000555116 CSNK1G2-AS1Q8NCQ2 148 aa10.36□□□□□ -0.75
SHMT2-217ENST00000555116 ZNF738Q8NE65 137 aa10.36□□□□□ -0.75
SHMT2-217ENST00000555116 ZNF503Q96F45 646 aa10.36□□□□□ -0.75
SHMT2-217ENST00000555116 CXCL1P09341 107 aa10.35□□□□□ -0.75
SHMT2-217ENST00000555116 PYYP10082 97 aa10.35□□□□□ -0.75
SHMT2-217ENST00000555116 HIST1H1EP10412 219 aaKnown RBP10.35□□□□□ -0.75
SHMT2-217ENST00000555116 TAS2R45P59539 299 aa10.35□□□□□ -0.75
SHMT2-217ENST00000555116 PQLC2Q6ZP29 291 aa10.35□□□□□ -0.75
SHMT2-217ENST00000555116 OR4B1Q8NGF8 309 aa10.35□□□□□ -0.75
SHMT2-217ENST00000555116 DERL1Q9BUN8 251 aa10.35□□□□□ -0.75
SHMT2-217ENST00000555116 NIT2Q9NQR4 276 aa10.35□□□□□ -0.75
SHMT2-217ENST00000555116 TMEM167BQ9NRX6 74 aa10.35□□□□□ -0.75
SHMT2-217ENST00000555116 ARL2-SNX15V9GYD0 113 aa10.35□□□□□ -0.75
SHMT2-217ENST00000555116 TGIF2-C20orf24A0A0A6YYL0 155 aa10.34□□□□□ -0.75
SHMT2-217ENST00000555116 NUTF2P61970 127 aaKnown RBP10.34□□□□□ -0.75
SHMT2-217ENST00000555116 OR11H2Q8NH07 326 aa10.34□□□□□ -0.75
SHMT2-217ENST00000555116 CLEC5AQ9NY25 188 aa10.34□□□□□ -0.75
SHMT2-217ENST00000555116 TRBV19A0A075B6N1 114 aa10.34□□□□□ -0.75
SHMT2-217ENST00000555116 SCO2A0A1W2PP80 73 aa10.34□□□□□ -0.75
SHMT2-217ENST00000555116 OR7C2O60412 319 aa10.34□□□□□ -0.75
SHMT2-217ENST00000555116 ZNF253O75346 499 aa10.34□□□□□ -0.75
SHMT2-217ENST00000555116 ZNF705DP0CH99 300 aaPredicted RBP10.34□□□□□ -0.75
SHMT2-217ENST00000555116 ZNF705BP0CI00 300 aaPredicted RBP10.34□□□□□ -0.75
SHMT2-217ENST00000555116 PSG9Q00887 426 aa10.34□□□□□ -0.75
SHMT2-217ENST00000555116 AMTNQ6UX39 209 aa10.34□□□□□ -0.75
SHMT2-217ENST00000555116 MUC7Q8TAX7 377 aa10.34□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 68.6 ms