RNA–Protein interactions for RNA: ENST00000554872.5

CCDC88C-209, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 4

Gene CCDC88C, Length 1,165 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-209ENST00000554872 ATP5G3P48201 142 aa11.31□□□□□ -0.6
CCDC88C-209ENST00000554872 TMEM88Q6PEY1 159 aa11.31□□□□□ -0.6
CCDC88C-209ENST00000554872 AQP10Q96PS8 301 aa11.31□□□□□ -0.6
CCDC88C-209ENST00000554872 AGPAT4-IT1Q9H0P7 198 aa11.31□□□□□ -0.6
CCDC88C-209ENST00000554872 MED28Q9H204 178 aa11.31□□□□□ -0.6
CCDC88C-209ENST00000554872 WFDC1Q9HC57 220 aa11.31□□□□□ -0.6
CCDC88C-209ENST00000554872 ZNF324O75467 553 aaPredicted RBP11.3□□□□□ -0.6
CCDC88C-209ENST00000554872 DEFB130BP0DP73 79 aa11.3□□□□□ -0.6
CCDC88C-209ENST00000554872 DEFB130AP0DP74 79 aa11.3□□□□□ -0.6
CCDC88C-209ENST00000554872 HTN3P15516 51 aa11.3□□□□□ -0.6
CCDC88C-209ENST00000554872 M6PRP20645 277 aa11.3□□□□□ -0.6
CCDC88C-209ENST00000554872 FAM3BP58499 235 aaPredicted RBP11.3□□□□□ -0.6
CCDC88C-209ENST00000554872 DAZ2Q13117 558 aaKnown RBP11.3□□□□□ -0.6
CCDC88C-209ENST00000554872 ZNF266Q14584 549 aa11.3□□□□□ -0.6
CCDC88C-209ENST00000554872 ARL6IP6Q8N6S5 226 aa11.3□□□□□ -0.6
CCDC88C-209ENST00000554872 PHYHIPLQ96FC7 376 aa11.3□□□□□ -0.6
CCDC88C-209ENST00000554872 SMIM3Q9BZL3 60 aa11.3□□□□□ -0.6
CCDC88C-209ENST00000554872 TRAV12-3A0A0B4J271 114 aa11.29□□□□□ -0.6
CCDC88C-209ENST00000554872 GIPP09681 153 aaPredicted RBP11.29□□□□□ -0.6
CCDC88C-209ENST00000554872 OR10J4P0C629 311 aa11.29□□□□□ -0.6
CCDC88C-209ENST00000554872 HTN1P15515 57 aa11.29□□□□□ -0.6
CCDC88C-209ENST00000554872 UBE2L3P68036 154 aaKnown RBP11.29□□□□□ -0.6
CCDC88C-209ENST00000554872 ERCC8Q13216 396 aa11.29□□□□□ -0.6
CCDC88C-209ENST00000554872 FCN2Q15485 313 aa11.29□□□□□ -0.6
CCDC88C-209ENST00000554872 ACOT6Q3I5F7 207 aaPredicted RBP11.29□□□□□ -0.6
CCDC88C-209ENST00000554872 ANXA2RQ3ZCQ2 193 aa11.29□□□□□ -0.6
CCDC88C-209ENST00000554872 TMEM78Q5T7P6 136 aa11.29□□□□□ -0.6
CCDC88C-209ENST00000554872 ZFAND2AQ8N6M9 145 aa11.29□□□□□ -0.6
CCDC88C-209ENST00000554872 ZNF680Q8NEM1 530 aa11.29□□□□□ -0.6
CCDC88C-209ENST00000554872 OR2G3Q8NGZ4 309 aa11.29□□□□□ -0.6
CCDC88C-209ENST00000554872 C18orf15Q96N68 181 aa11.29□□□□□ -0.6
CCDC88C-209ENST00000554872 NOP10Q9NPE3 64 aaKnown RBP11.29□□□□□ -0.6
CCDC88C-209ENST00000554872 ZNF492Q9P255 531 aa11.29□□□□□ -0.6
CCDC88C-209ENST00000554872 DNAH10Q8IVF4 4471 aa11.29□□□□□ -0.6
CCDC88C-209ENST00000554872 LGALS9BQ3B8N2 356 aa11.28□□□□□ -0.6
CCDC88C-209ENST00000554872 FAM122CQ6P4D5 195 aa11.28□□□□□ -0.6
CCDC88C-209ENST00000554872 PQLC2Q6ZP29 291 aa11.28□□□□□ -0.6
CCDC88C-209ENST00000554872 TMED6Q8WW62 240 aa11.28□□□□□ -0.6
CCDC88C-209ENST00000554872 PSMG3Q9BT73 122 aaPredicted RBP11.28□□□□□ -0.6
CCDC88C-209ENST00000554872 LENEPQ9Y5L5 61 aa11.28□□□□□ -0.6
CCDC88C-209ENST00000554872 IGKV2-40A0A087WW87 121 aaPredicted RBP11.27□□□□□ -0.61
CCDC88C-209ENST00000554872 IGKV2D-40P01614 121 aaPredicted RBP11.27□□□□□ -0.61
CCDC88C-209ENST00000554872 CSN1S1P47710 185 aa11.27□□□□□ -0.61
CCDC88C-209ENST00000554872 ZNF138P52744 262 aa11.27□□□□□ -0.61
CCDC88C-209ENST00000554872 IBA57Q5T440 356 aaKnown RBP11.27□□□□□ -0.61
CCDC88C-209ENST00000554872 VGLL1Q99990 258 aa11.27□□□□□ -0.61
CCDC88C-209ENST00000554872 Q9H3A6 140 aa11.27□□□□□ -0.61
CCDC88C-209ENST00000554872 HECTD4Q9Y4D8 3996 aa11.26□□□□□ -0.61
CCDC88C-209ENST00000554872 SNURFLB1AK76 121 aa11.26□□□□□ -0.61
CCDC88C-209ENST00000554872 CD300CQ08708 224 aa11.26□□□□□ -0.61
CCDC88C-209ENST00000554872 BTN1A1Q13410 526 aa11.26□□□□□ -0.61
CCDC88C-209ENST00000554872 LINC00336Q6ZUF6 198 aa11.26□□□□□ -0.61
CCDC88C-209ENST00000554872 EIF4E3Q8N5X7 224 aaKnown RBP11.26□□□□□ -0.61
CCDC88C-209ENST00000554872 C11orf72Q8NBR9 251 aa11.26□□□□□ -0.61
CCDC88C-209ENST00000554872 RXFP4Q8TDU9 374 aa11.26□□□□□ -0.61
CCDC88C-209ENST00000554872 OTORQ9NRC9 128 aa11.26□□□□□ -0.61
CCDC88C-209ENST00000554872 F5H768 121 aa11.25□□□□□ -0.61
CCDC88C-209ENST00000554872 H3BNG1 76 aa11.25□□□□□ -0.61
CCDC88C-209ENST00000554872 J3KRW8 73 aa11.25□□□□□ -0.61
CCDC88C-209ENST00000554872 GPX1P07203 203 aa11.25□□□□□ -0.61
CCDC88C-209ENST00000554872 RANP62826 216 aaKnown RBP11.25□□□□□ -0.61
CCDC88C-209ENST00000554872 SERF2P84101 59 aa11.25□□□□□ -0.61
CCDC88C-209ENST00000554872 Q6ZR54 194 aa11.25□□□□□ -0.61
CCDC88C-209ENST00000554872 A0A1W2PPV4 95 aa11.24□□□□□ -0.61
CCDC88C-209ENST00000554872 DIRC3C9JPN6 131 aa11.24□□□□□ -0.61
CCDC88C-209ENST00000554872 TCL1AP56279 114 aa11.24□□□□□ -0.61
CCDC88C-209ENST00000554872 RAB2AP61019 212 aa11.24□□□□□ -0.61
CCDC88C-209ENST00000554872 PRR9Q5T870 116 aa11.24□□□□□ -0.61
CCDC88C-209ENST00000554872 UBE2DNLQ8IWF7 75 aa11.24□□□□□ -0.61
CCDC88C-209ENST00000554872 MBP02144 154 aa11.23□□□□□ -0.61
CCDC88C-209ENST00000554872 RNASE4P34096 147 aaKnown RBP11.23□□□□□ -0.61
CCDC88C-209ENST00000554872 RGS21Q2M5E4 152 aa11.23□□□□□ -0.61
CCDC88C-209ENST00000554872 FAM74A1Q5RGS3 127 aa11.23□□□□□ -0.61
CCDC88C-209ENST00000554872 OR10G4Q8NGN3 311 aa11.23□□□□□ -0.61
CCDC88C-209ENST00000554872 OR10G9Q8NGN4 311 aa11.23□□□□□ -0.61
CCDC88C-209ENST00000554872 OR10G7Q8NGN6 311 aa11.23□□□□□ -0.61
CCDC88C-209ENST00000554872 SUN5Q8TC36 379 aa11.23□□□□□ -0.61
CCDC88C-209ENST00000554872 RNF222A6NCQ9 220 aa11.22□□□□□ -0.61
CCDC88C-209ENST00000554872 ATP6V0CP27449 155 aa11.22□□□□□ -0.61
CCDC88C-209ENST00000554872 Q5BKY6 102 aa11.22□□□□□ -0.61
CCDC88C-209ENST00000554872 Q6AWC8 147 aa11.22□□□□□ -0.61
CCDC88C-209ENST00000554872 Q8TAT8 98 aa11.22□□□□□ -0.61
CCDC88C-209ENST00000554872 NACAE9PAV3 2078 aa11.21□□□□□ -0.61
CCDC88C-209ENST00000554872 IGHV1OR15-1A0A075B7D0 117 aa11.21□□□□□ -0.61
CCDC88C-209ENST00000554872 GAGE12BA1L429 117 aa11.21□□□□□ -0.61
CCDC88C-209ENST00000554872 SPINK4O60575 86 aa11.21□□□□□ -0.61
CCDC88C-209ENST00000554872 GAGE7O76087 117 aa11.21□□□□□ -0.61
CCDC88C-209ENST00000554872 GAGE12FP0CL80 117 aa11.21□□□□□ -0.61
CCDC88C-209ENST00000554872 GAGE12GP0CL81 117 aa11.21□□□□□ -0.61
CCDC88C-209ENST00000554872 GAGE12IP0CL82 117 aa11.21□□□□□ -0.61
CCDC88C-209ENST00000554872 STAG3L2P0CL84 134 aa11.21□□□□□ -0.61
CCDC88C-209ENST00000554872 STAG3L3P0CL85 134 aa11.21□□□□□ -0.61
CCDC88C-209ENST00000554872 CDC34P49427 236 aaPredicted RBP11.21□□□□□ -0.61
CCDC88C-209ENST00000554872 INO80EQ8NBZ0 244 aaPredicted RBP11.21□□□□□ -0.61
CCDC88C-209ENST00000554872 GSN-AS1Q9NRJ2 163 aa11.21□□□□□ -0.61
CCDC88C-209ENST00000554872 TP53TG3Q9ULZ0 132 aa11.21□□□□□ -0.61
CCDC88C-209ENST00000554872 TNFSF18Q9UNG2 199 aa11.21□□□□□ -0.61
CCDC88C-209ENST00000554872 SERTM2A0A1B0GWG4 89 aa11.2□□□□□ -0.62
CCDC88C-209ENST00000554872 RGS13O14921 159 aa11.2□□□□□ -0.62
CCDC88C-209ENST00000554872 Q6ZTI0 123 aa11.2□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms