RNA–Protein interactions for RNA: ENST00000553576.5

VIPAS39-204, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 4

Gene VIPAS39, Length 547 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-204ENST00000553576 FAM162BQ5T6X4 162 aa4.6□□□□□ -1.67
VIPAS39-204ENST00000553576 GDF5OSQ5U4N7 250 aa4.6□□□□□ -1.67
VIPAS39-204ENST00000553576 MRPL54Q6P161 138 aaKnown RBP4.6□□□□□ -1.67
VIPAS39-204ENST00000553576 C9orf47Q6ZRZ4 202 aa4.6□□□□□ -1.67
VIPAS39-204ENST00000553576 GPHB5Q86YW7 130 aa4.6□□□□□ -1.67
VIPAS39-204ENST00000553576 OR2D3Q8NGH3 330 aa4.6□□□□□ -1.67
VIPAS39-204ENST00000553576 GLMPQ8WWB7 406 aa4.6□□□□□ -1.67
VIPAS39-204ENST00000553576 GNB4Q9HAV0 340 aa4.6□□□□□ -1.67
VIPAS39-204ENST00000553576 LENEPQ9Y5L5 61 aa4.6□□□□□ -1.67
VIPAS39-204ENST00000553576 ANKRD17O75179 2603 aaKnown RBP4.6□□□□□ -1.67
VIPAS39-204ENST00000553576 SVEP1Q4LDE5 3571 aa4.6□□□□□ -1.67
VIPAS39-204ENST00000553576 FLNCQ14315 2725 aa4.59□□□□□ -1.67
VIPAS39-204ENST00000553576 UBR5O95071 2799 aaPredicted RBP4.59□□□□□ -1.67
VIPAS39-204ENST00000553576 CELSR1Q9NYQ6 3014 aa4.59□□□□□ -1.67
VIPAS39-204ENST00000553576 IGHV3-35A0A0C4DH35 117 aa4.59□□□□□ -1.67
VIPAS39-204ENST00000553576 A0A1B0GUT8 65 aa4.59□□□□□ -1.67
VIPAS39-204ENST00000553576 FABP5P3A8MUU1 101 aa4.59□□□□□ -1.67
VIPAS39-204ENST00000553576 SPINK4O60575 86 aa4.59□□□□□ -1.67
VIPAS39-204ENST00000553576 UTP20O75691 2785 aaKnown RBP4.59□□□□□ -1.67
VIPAS39-204ENST00000553576 SERF1AO75920 110 aa4.59□□□□□ -1.67
VIPAS39-204ENST00000553576 CT45A10P0DMU9 189 aa4.59□□□□□ -1.67
VIPAS39-204ENST00000553576 PSMB8P28062 276 aa4.59□□□□□ -1.67
VIPAS39-204ENST00000553576 SRIP30626 198 aa4.59□□□□□ -1.67
VIPAS39-204ENST00000553576 RAB4BP61018 213 aa4.59□□□□□ -1.67
VIPAS39-204ENST00000553576 SLC35B1P78383 322 aa4.59□□□□□ -1.67
VIPAS39-204ENST00000553576 SLAQ13239 276 aa4.59□□□□□ -1.67
VIPAS39-204ENST00000553576 RIGQ13278 110 aa4.59□□□□□ -1.67
VIPAS39-204ENST00000553576 FOXE3Q13461 319 aa4.59□□□□□ -1.67
VIPAS39-204ENST00000553576 C9orf152Q5JTZ5 239 aa4.59□□□□□ -1.67
VIPAS39-204ENST00000553576 ZNF493Q6ZR52 646 aa4.59□□□□□ -1.67
VIPAS39-204ENST00000553576 TCF24Q7RTU0 167 aa4.59□□□□□ -1.67
VIPAS39-204ENST00000553576 ZNF575Q86XF7 245 aa4.59□□□□□ -1.67
VIPAS39-204ENST00000553576 BAGE3Q86Y29 109 aa4.59□□□□□ -1.67
VIPAS39-204ENST00000553576 RNF152Q8N8N0 203 aa4.59□□□□□ -1.67
VIPAS39-204ENST00000553576 C18orf32Q8TCD1 76 aa4.59□□□□□ -1.67
VIPAS39-204ENST00000553576 NOL4LQ96MY1 436 aaPredicted RBP4.59□□□□□ -1.67
VIPAS39-204ENST00000553576 C8orf49Q96NF6 230 aa4.59□□□□□ -1.67
VIPAS39-204ENST00000553576 ALKBH7Q9BT30 221 aaPredicted RBP4.59□□□□□ -1.67
VIPAS39-204ENST00000553576 KLK15Q9H2R5 256 aa4.59□□□□□ -1.67
VIPAS39-204ENST00000553576 LINC00527Q9UJ94 153 aa4.59□□□□□ -1.67
VIPAS39-204ENST00000553576 TRAV8-2A0A0B4J237 113 aa4.58□□□□□ -1.68
VIPAS39-204ENST00000553576 TRBV7-9A0A0J9YWB2 115 aa4.58□□□□□ -1.68
VIPAS39-204ENST00000553576 A1L4Q6 167 aa4.58□□□□□ -1.68
VIPAS39-204ENST00000553576 GRIFINA4D1Z8 144 aa4.58□□□□□ -1.68
VIPAS39-204ENST00000553576 TMEM189A5PLL7 270 aa4.58□□□□□ -1.68
VIPAS39-204ENST00000553576 IGHV4-59P01825 116 aa4.58□□□□□ -1.68
VIPAS39-204ENST00000553576 ELANEP08246 267 aa4.58□□□□□ -1.68
VIPAS39-204ENST00000553576 PKIAP61925 76 aa4.58□□□□□ -1.68
VIPAS39-204ENST00000553576 HIST1H1AQ02539 215 aaPredicted RBP4.58□□□□□ -1.68
VIPAS39-204ENST00000553576 IQCJQ1A5X6 159 aa4.58□□□□□ -1.68
VIPAS39-204ENST00000553576 KIAA1644Q3SXP7 199 aa4.58□□□□□ -1.68
VIPAS39-204ENST00000553576 Q8N2B8 174 aa4.58□□□□□ -1.68
VIPAS39-204ENST00000553576 TEX29Q8N6K0 151 aa4.58□□□□□ -1.68
VIPAS39-204ENST00000553576 OR4X2Q8NGF9 303 aa4.58□□□□□ -1.68
VIPAS39-204ENST00000553576 MYOZ3Q8TDC0 251 aa4.58□□□□□ -1.68
VIPAS39-204ENST00000553576 PGLYRP4Q96LB8 373 aa4.58□□□□□ -1.68
VIPAS39-204ENST00000553576 LINC00477Q96M19 166 aa4.58□□□□□ -1.68
VIPAS39-204ENST00000553576 ASCL2Q99929 193 aa4.58□□□□□ -1.68
VIPAS39-204ENST00000553576 VGLL1Q99990 258 aa4.58□□□□□ -1.68
VIPAS39-204ENST00000553576 SPATA25Q9BR10 227 aa4.58□□□□□ -1.68
VIPAS39-204ENST00000553576 CNFNQ9BYD5 112 aa4.58□□□□□ -1.68
VIPAS39-204ENST00000553576 NPFFR1Q9GZQ6 430 aa4.58□□□□□ -1.68
VIPAS39-204ENST00000553576 AGPAT4-IT1Q9H0P7 198 aa4.58□□□□□ -1.68
VIPAS39-204ENST00000553576 PEF1Q9UBV8 284 aaKnown RBP4.58□□□□□ -1.68
VIPAS39-204ENST00000553576 VPREB3Q9UKI3 123 aa4.58□□□□□ -1.68
VIPAS39-204ENST00000553576 IGHV3OR16-8A0A075B7F1 116 aa4.57□□□□□ -1.68
VIPAS39-204ENST00000553576 IGKV2-40A0A087WW87 121 aaPredicted RBP4.57□□□□□ -1.68
VIPAS39-204ENST00000553576 LOC102724200A0A096LPH7 203 aaPredicted RBP4.57□□□□□ -1.68
VIPAS39-204ENST00000553576 IGHV7-4-1A0A0J9YVY3 117 aa4.57□□□□□ -1.68
VIPAS39-204ENST00000553576 A0A1B0GUS0 222 aa4.57□□□□□ -1.68
VIPAS39-204ENST00000553576 PCP4L1A6NKN8 68 aa4.57□□□□□ -1.68
VIPAS39-204ENST00000553576 ZNF705FA8MVS1 300 aaPredicted RBP4.57□□□□□ -1.68
VIPAS39-204ENST00000553576 SOCS3O14543 225 aa4.57□□□□□ -1.68
VIPAS39-204ENST00000553576 SMAD7O15105 426 aaKnown RBP4.57□□□□□ -1.68
VIPAS39-204ENST00000553576 SH2D1AO60880 128 aa4.57□□□□□ -1.68
VIPAS39-204ENST00000553576 ZNF324O75467 553 aaPredicted RBP4.57□□□□□ -1.68
VIPAS39-204ENST00000553576 IGKV2D-40P01614 121 aaPredicted RBP4.57□□□□□ -1.68
VIPAS39-204ENST00000553576 TRBV12-3P01733 135 aa4.57□□□□□ -1.68
VIPAS39-204ENST00000553576 IGLC6P0CF74 106 aa4.57□□□□□ -1.68
VIPAS39-204ENST00000553576 PF4V1P10720 104 aa4.57□□□□□ -1.68
VIPAS39-204ENST00000553576 HLA-DMBP28068 263 aa4.57□□□□□ -1.68
VIPAS39-204ENST00000553576 CAMPP49913 170 aa4.57□□□□□ -1.68
VIPAS39-204ENST00000553576 ZNF138P52744 262 aa4.57□□□□□ -1.68
VIPAS39-204ENST00000553576 FAM106AQ4KMX7 169 aa4.57□□□□□ -1.68
VIPAS39-204ENST00000553576 Q5PR19 223 aa4.57□□□□□ -1.68
VIPAS39-204ENST00000553576 SAMD13Q5VXD3 122 aa4.57□□□□□ -1.68
VIPAS39-204ENST00000553576 UNQ9165/PRO28630Q6UXU0 137 aa4.57□□□□□ -1.68
VIPAS39-204ENST00000553576 Q71RC1 249 aaPredicted RBP4.57□□□□□ -1.68
VIPAS39-204ENST00000553576 TMEM86BQ8N661 226 aa4.57□□□□□ -1.68
VIPAS39-204ENST00000553576 CHCHD1Q96BP2 118 aaKnown RBP4.57□□□□□ -1.68
VIPAS39-204ENST00000553576 KCNS1Q96KK3 526 aa4.57□□□□□ -1.68
VIPAS39-204ENST00000553576 SMPXQ9UHP9 88 aa4.57□□□□□ -1.68
VIPAS39-204ENST00000553576 CELSR2Q9HCU4 2923 aa4.57□□□□□ -1.68
VIPAS39-204ENST00000553576 ZNF462Q96JM2 2506 aa4.56□□□□□ -1.68
VIPAS39-204ENST00000553576 FBN2P35556 2912 aa4.56□□□□□ -1.68
VIPAS39-204ENST00000553576 FAM208BQ5VWN6 2430 aa4.56□□□□□ -1.68
VIPAS39-204ENST00000553576 PRAC2D3DTV9 90 aa4.56□□□□□ -1.68
VIPAS39-204ENST00000553576 F2Z2F3 143 aa4.56□□□□□ -1.68
VIPAS39-204ENST00000553576 LGALS9O00182 355 aa4.56□□□□□ -1.68
VIPAS39-204ENST00000553576 OVOL1O14753 267 aa4.56□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms