RNA–Protein interactions for RNA: ENST00000553569.1

TDP1-206, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 3

Gene TDP1, Length 879 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-206ENST00000553569 TMEM78Q5T7P6 136 aa16.41■□□□□ 0.22
TDP1-206ENST00000553569 GFI1BQ5VTD9 330 aa16.41■□□□□ 0.22
TDP1-206ENST00000553569 C9orf47Q6ZRZ4 202 aa16.41■□□□□ 0.22
TDP1-206ENST00000553569 CMTM2Q8TAZ6 248 aa16.41■□□□□ 0.22
TDP1-206ENST00000553569 LINC00477Q96M19 166 aa16.41■□□□□ 0.22
TDP1-206ENST00000553569 LINC01587Q99440 93 aa16.41■□□□□ 0.22
TDP1-206ENST00000553569 FAM74A1Q5RGS3 127 aa16.4■□□□□ 0.22
TDP1-206ENST00000553569 TMEM189A5PLL7 270 aa16.39■□□□□ 0.21
TDP1-206ENST00000553569 C1QBP02746 253 aa16.39■□□□□ 0.21
TDP1-206ENST00000553569 HTN1P15515 57 aa16.39■□□□□ 0.21
TDP1-206ENST00000553569 TMEM256Q8N2U0 113 aa16.39■□□□□ 0.21
TDP1-206ENST00000553569 Q8TAT8 98 aa16.39■□□□□ 0.21
TDP1-206ENST00000553569 RXFP4Q8TDU9 374 aa16.39■□□□□ 0.21
TDP1-206ENST00000553569 TMEM167BQ9NRX6 74 aa16.39■□□□□ 0.21
TDP1-206ENST00000553569 A0A1B0GVG6 124 aa16.38■□□□□ 0.21
TDP1-206ENST00000553569 NUPR2A6NF83 97 aa16.38■□□□□ 0.21
TDP1-206ENST00000553569 DIRC3C9JPN6 131 aa16.38■□□□□ 0.21
TDP1-206ENST00000553569 FGF8P55075 233 aaPredicted RBP16.38■□□□□ 0.21
TDP1-206ENST00000553569 ZNF767PQ75MW2 155 aa16.38■□□□□ 0.21
TDP1-206ENST00000553569 PHLDA1Q8WV24 401 aaPredicted RBP16.38■□□□□ 0.21
TDP1-206ENST00000553569 STARD9Q9P2P6 4700 aa16.37■□□□□ 0.21
TDP1-206ENST00000553569 TRAV12-3A0A0B4J271 114 aa16.37■□□□□ 0.21
TDP1-206ENST00000553569 GNG5P63218 68 aa16.37■□□□□ 0.21
TDP1-206ENST00000553569 EIF5AP63241 154 aaKnown RBP16.37■□□□□ 0.21
TDP1-206ENST00000553569 CD300CQ08708 224 aa16.37■□□□□ 0.21
TDP1-206ENST00000553569 FAM19A4Q96LR4 140 aa16.37■□□□□ 0.21
TDP1-206ENST00000553569 RBAKDNA6NC62 111 aa16.36■□□□□ 0.21
TDP1-206ENST00000553569 MAP1LC3B2A6NCE7 125 aa16.36■□□□□ 0.21
TDP1-206ENST00000553569 SLC25A5P05141 298 aaKnown RBP16.36■□□□□ 0.21
TDP1-206ENST00000553569 SEC11BP0C7V7 166 aa16.36■□□□□ 0.21
TDP1-206ENST00000553569 ZNF138P52744 262 aa16.36■□□□□ 0.21
TDP1-206ENST00000553569 TAS2R60P59551 318 aa16.36■□□□□ 0.21
TDP1-206ENST00000553569 BTN1A1Q13410 526 aa16.36■□□□□ 0.21
TDP1-206ENST00000553569 LGALSLQ3ZCW2 172 aaPredicted RBP16.36■□□□□ 0.21
TDP1-206ENST00000553569 CEMP1Q6PRD7 247 aaPredicted RBP16.36■□□□□ 0.21
TDP1-206ENST00000553569 SUN5Q8TC36 379 aa16.36■□□□□ 0.21
TDP1-206ENST00000553569 C20orf144Q9BQM9 153 aa16.36■□□□□ 0.21
TDP1-206ENST00000553569 MAP1LC3BQ9GZQ8 125 aa16.36■□□□□ 0.21
TDP1-206ENST00000553569 TMPRSS5Q9H3S3 457 aa16.36■□□□□ 0.21
TDP1-206ENST00000553569 PLA2G2EQ9NZK7 142 aa16.36■□□□□ 0.21
TDP1-206ENST00000553569 ZNF492Q9P255 531 aa16.36■□□□□ 0.21
TDP1-206ENST00000553569 YTHDF2Q9Y5A9 579 aaKnown RBP16.36■□□□□ 0.21
TDP1-206ENST00000553569 CSMD3Q7Z407 3707 aa16.35■□□□□ 0.21
TDP1-206ENST00000553569 C7orf71A4D174 169 aa16.35■□□□□ 0.21
TDP1-206ENST00000553569 H7BYZ3 331 aa16.35■□□□□ 0.21
TDP1-206ENST00000553569 TPT1P13693 172 aaKnown RBP16.35■□□□□ 0.21
TDP1-206ENST00000553569 AZU1P20160 251 aa16.35■□□□□ 0.21
TDP1-206ENST00000553569 FHITP49789 147 aa16.35■□□□□ 0.21
TDP1-206ENST00000553569 Q6ZTC4 211 aa16.35■□□□□ 0.21
TDP1-206ENST00000553569 GOLT1AQ6ZVE7 132 aa16.35■□□□□ 0.21
TDP1-206ENST00000553569 NIPSNAP3BQ9BS92 247 aa16.35■□□□□ 0.21
TDP1-206ENST00000553569 KLLNB2CW77 178 aa16.34■□□□□ 0.21
TDP1-206ENST00000553569 SPART-AS1P0CW21 52 aa16.34■□□□□ 0.21
TDP1-206ENST00000553569 CRISP2P16562 243 aa16.34■□□□□ 0.21
TDP1-206ENST00000553569 RNASE4P34096 147 aaKnown RBP16.34■□□□□ 0.21
TDP1-206ENST00000553569 FAM222AQ5U5X8 452 aa16.34■□□□□ 0.21
TDP1-206ENST00000553569 FAM213BQ8TBF2 198 aa16.34■□□□□ 0.21
TDP1-206ENST00000553569 TMED6Q8WW62 240 aa16.34■□□□□ 0.21
TDP1-206ENST00000553569 GPX1P07203 203 aa16.33■□□□□ 0.2
TDP1-206ENST00000553569 UBE2G2P60604 165 aa16.33■□□□□ 0.2
TDP1-206ENST00000553569 C12orf74Q32Q52 190 aa16.33■□□□□ 0.2
TDP1-206ENST00000553569 PRR9Q5T870 116 aa16.33■□□□□ 0.2
TDP1-206ENST00000553569 ZFAND2AQ8N6M9 145 aa16.33■□□□□ 0.2
TDP1-206ENST00000553569 STOML3Q8TAV4 291 aa16.33■□□□□ 0.2
TDP1-206ENST00000553569 DKK2Q9UBU2 259 aa16.33■□□□□ 0.2
TDP1-206ENST00000553569 GGTLC3B5MD39 225 aa16.32■□□□□ 0.2
TDP1-206ENST00000553569 UMAD1C9J7I0 102 aa16.32■□□□□ 0.2
TDP1-206ENST00000553569 SUMO1P63165 101 aaKnown RBP16.32■□□□□ 0.2
TDP1-206ENST00000553569 C5orf17Q8NAS9 161 aa16.32■□□□□ 0.2
TDP1-206ENST00000553569 KLK5Q9Y337 293 aaPredicted RBP16.32■□□□□ 0.2
TDP1-206ENST00000553569 C16orf74Q96GX8 76 aa16.31■□□□□ 0.2
TDP1-206ENST00000553569 TRAV8-1A0A0A6YYK1 113 aa16.3■□□□□ 0.2
TDP1-206ENST00000553569 TEX48A0A1B0GUV7 120 aa16.3■□□□□ 0.2
TDP1-206ENST00000553569 NMBP08949 121 aa16.3■□□□□ 0.2
TDP1-206ENST00000553569 ZFP69Q49AA0 526 aa16.3■□□□□ 0.2
TDP1-206ENST00000553569 ARL6IP6Q8N6S5 226 aa16.3■□□□□ 0.2
TDP1-206ENST00000553569 TRBV7-9A0A0J9YWB2 115 aa16.29■□□□□ 0.2
TDP1-206ENST00000553569 A0A1B0GV50 99 aa16.29■□□□□ 0.2
TDP1-206ENST00000553569 A0A1W2PRE2 83 aa16.29■□□□□ 0.2
TDP1-206ENST00000553569 PLAC8L1A1L4L8 177 aa16.29■□□□□ 0.2
TDP1-206ENST00000553569 C11orf94C9JXX5 98 aa16.29■□□□□ 0.2
TDP1-206ENST00000553569 TCRAP04437 139 aa16.29■□□□□ 0.2
TDP1-206ENST00000553569 CCDC28AQ8IWP9 274 aa16.29■□□□□ 0.2
TDP1-206ENST00000553569 TMEM263Q8WUH6 116 aaKnown RBP16.29■□□□□ 0.2
TDP1-206ENST00000553569 SGK494Q96LW2 274 aa16.29■□□□□ 0.2
TDP1-206ENST00000553569 PYGO2Q9BRQ0 406 aa16.29■□□□□ 0.2
TDP1-206ENST00000553569 TRAV10A0A0B4J240 114 aa16.28■□□□□ 0.2
TDP1-206ENST00000553569 C9orf62Q8N4C0 152 aa16.28■□□□□ 0.2
TDP1-206ENST00000553569 RNASE8Q8TDE3 154 aaKnown RBP16.28■□□□□ 0.2
TDP1-206ENST00000553569 SFT2D1Q8WV19 159 aa16.28■□□□□ 0.2
TDP1-206ENST00000553569 EPDR1Q9UM22 224 aa16.28■□□□□ 0.2
TDP1-206ENST00000553569 ZNF324O75467 553 aaPredicted RBP16.27■□□□□ 0.2
TDP1-206ENST00000553569 DAD1P61803 113 aa16.27■□□□□ 0.2
TDP1-206ENST00000553569 DPPA3Q6W0C5 159 aa16.27■□□□□ 0.2
TDP1-206ENST00000553569 Q6ZQT7 251 aa16.27■□□□□ 0.2
TDP1-206ENST00000553569 ZNF493Q6ZR52 646 aa16.27■□□□□ 0.2
TDP1-206ENST00000553569 LENEPQ9Y5L5 61 aa16.27■□□□□ 0.2
TDP1-206ENST00000553569 SERTM2A0A1B0GWG4 89 aa16.26■□□□□ 0.19
TDP1-206ENST00000553569 FAM74A7A6NL05 159 aa16.26■□□□□ 0.19
TDP1-206ENST00000553569 K7EQM0 130 aa16.26■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 57.5 ms