RNA–Protein interactions for RNA: ENST00000553256.5

PTCH1-227, Transcript of patched 1, humanhuman

TSL 4

Gene PTCH1, Length 537 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-227ENST00000553256 IGKV2D-40P01614 121 aaPredicted RBP13.62□□□□□ -0.23
PTCH1-227ENST00000553256 LEPP41159 167 aa13.62□□□□□ -0.23
PTCH1-227ENST00000553256 PRR9Q5T870 116 aa13.62□□□□□ -0.23
PTCH1-227ENST00000553256 SUN5Q8TC36 379 aa13.62□□□□□ -0.23
PTCH1-227ENST00000553256 TMEM263Q8WUH6 116 aaKnown RBP13.62□□□□□ -0.23
PTCH1-227ENST00000553256 AAMDCQ9H7C9 122 aa13.62□□□□□ -0.23
PTCH1-227ENST00000553256 OR7C2O60412 319 aa13.61□□□□□ -0.23
PTCH1-227ENST00000553256 NMBP08949 121 aa13.61□□□□□ -0.23
PTCH1-227ENST00000553256 ATP6V0CP27449 155 aa13.61□□□□□ -0.23
PTCH1-227ENST00000553256 CD300CQ08708 224 aa13.61□□□□□ -0.23
PTCH1-227ENST00000553256 ZNF266Q14584 549 aa13.61□□□□□ -0.23
PTCH1-227ENST00000553256 KHDC3LQ587J8 217 aa13.61□□□□□ -0.23
PTCH1-227ENST00000553256 FAM122CQ6P4D5 195 aa13.61□□□□□ -0.23
PTCH1-227ENST00000553256 ZNF493Q6ZR52 646 aa13.61□□□□□ -0.23
PTCH1-227ENST00000553256 OR2T35Q8NGX2 323 aa13.61□□□□□ -0.23
PTCH1-227ENST00000553256 C16orf74Q96GX8 76 aa13.61□□□□□ -0.23
PTCH1-227ENST00000553256 FAM210BQ96KR6 192 aa13.61□□□□□ -0.23
PTCH1-227ENST00000553256 LINC00467Q9BRT7 94 aa13.61□□□□□ -0.23
PTCH1-227ENST00000553256 Q9H3A6 140 aa13.61□□□□□ -0.23
PTCH1-227ENST00000553256 ZNF492Q9P255 531 aa13.61□□□□□ -0.23
PTCH1-227ENST00000553256 HECTD4Q9Y4D8 3996 aa13.61□□□□□ -0.23
PTCH1-227ENST00000553256 TRBV7-9A0A0J9YWB2 115 aa13.6□□□□□ -0.23
PTCH1-227ENST00000553256 SLC25A5P05141 298 aaKnown RBP13.6□□□□□ -0.23
PTCH1-227ENST00000553256 UBE2L3P68036 154 aaKnown RBP13.6□□□□□ -0.23
PTCH1-227ENST00000553256 ACOT6Q3I5F7 207 aaPredicted RBP13.6□□□□□ -0.23
PTCH1-227ENST00000553256 HSD17B11Q8NBQ5 300 aa13.6□□□□□ -0.23
PTCH1-227ENST00000553256 TRAV12-3A0A0B4J271 114 aa13.59□□□□□ -0.23
PTCH1-227ENST00000553256 RBAKDNA6NC62 111 aa13.59□□□□□ -0.23
PTCH1-227ENST00000553256 STAG3L2P0CL84 134 aa13.59□□□□□ -0.23
PTCH1-227ENST00000553256 STAG3L3P0CL85 134 aa13.59□□□□□ -0.23
PTCH1-227ENST00000553256 TAS2R45P59539 299 aa13.59□□□□□ -0.23
PTCH1-227ENST00000553256 RANP62826 216 aaKnown RBP13.59□□□□□ -0.23
PTCH1-227ENST00000553256 PQLC2Q6ZP29 291 aa13.59□□□□□ -0.23
PTCH1-227ENST00000553256 Q6ZQT7 251 aa13.59□□□□□ -0.23
PTCH1-227ENST00000553256 OR10G4Q8NGN3 311 aa13.59□□□□□ -0.23
PTCH1-227ENST00000553256 OR10G9Q8NGN4 311 aa13.59□□□□□ -0.23
PTCH1-227ENST00000553256 OR10G7Q8NGN6 311 aa13.59□□□□□ -0.23
PTCH1-227ENST00000553256 SH3BGRL3Q9H299 93 aa13.59□□□□□ -0.23
PTCH1-227ENST00000553256 C7orf71A4D174 169 aa13.58□□□□□ -0.24
PTCH1-227ENST00000553256 DAD1P61803 113 aa13.58□□□□□ -0.24
PTCH1-227ENST00000553256 SERF2P84101 59 aa13.58□□□□□ -0.24
PTCH1-227ENST00000553256 BTN1A1Q13410 526 aa13.58□□□□□ -0.24
PTCH1-227ENST00000553256 RPL7L1Q6DKI1 246 aaKnown RBP13.58□□□□□ -0.24
PTCH1-227ENST00000553256 C11orf72Q8NBR9 251 aa13.58□□□□□ -0.24
PTCH1-227ENST00000553256 PYGO2Q9BRQ0 406 aa13.58□□□□□ -0.24
PTCH1-227ENST00000553256 CYTL1Q9NRR1 136 aa13.58□□□□□ -0.24
PTCH1-227ENST00000553256 DIRC3C9JPN6 131 aa13.57□□□□□ -0.24
PTCH1-227ENST00000553256 J3KRW8 73 aa13.57□□□□□ -0.24
PTCH1-227ENST00000553256 NDUFAF3Q9BU61 184 aa13.57□□□□□ -0.24
PTCH1-227ENST00000553256 TIMM8BQ9Y5J9 83 aaPredicted RBP13.57□□□□□ -0.24
PTCH1-227ENST00000553256 FXYD6-FXYD2A0A087WZ82 144 aa13.56□□□□□ -0.24
PTCH1-227ENST00000553256 ZNF138P52744 262 aa13.56□□□□□ -0.24
PTCH1-227ENST00000553256 SSX7Q7RTT5 188 aa13.56□□□□□ -0.24
PTCH1-227ENST00000553256 ARL6IP6Q8N6S5 226 aa13.56□□□□□ -0.24
PTCH1-227ENST00000553256 Q8TAT8 98 aa13.56□□□□□ -0.24
PTCH1-227ENST00000553256 NOP10Q9NPE3 64 aaKnown RBP13.56□□□□□ -0.24
PTCH1-227ENST00000553256 OTORQ9NRC9 128 aa13.56□□□□□ -0.24
PTCH1-227ENST00000553256 CBY3A6NI87 242 aa13.55□□□□□ -0.24
PTCH1-227ENST00000553256 HMGB3O15347 200 aaKnown RBP13.55□□□□□ -0.24
PTCH1-227ENST00000553256 HTN1P15515 57 aa13.55□□□□□ -0.24
PTCH1-227ENST00000553256 DAZ2Q13117 558 aaKnown RBP13.55□□□□□ -0.24
PTCH1-227ENST00000553256 ANXA2RQ3ZCQ2 193 aa13.55□□□□□ -0.24
PTCH1-227ENST00000553256 TMEM88Q6PEY1 159 aa13.55□□□□□ -0.24
PTCH1-227ENST00000553256 INO80EQ8NBZ0 244 aaPredicted RBP13.55□□□□□ -0.24
PTCH1-227ENST00000553256 TMED6Q8WW62 240 aa13.55□□□□□ -0.24
PTCH1-227ENST00000553256 RAB24Q969Q5 203 aa13.55□□□□□ -0.24
PTCH1-227ENST00000553256 A0A1W2PPV4 95 aa13.54□□□□□ -0.24
PTCH1-227ENST00000553256 ARL14EPLP0DKL9 152 aa13.54□□□□□ -0.24
PTCH1-227ENST00000553256 DEFB130BP0DP73 79 aa13.54□□□□□ -0.24
PTCH1-227ENST00000553256 DEFB130AP0DP74 79 aa13.54□□□□□ -0.24
PTCH1-227ENST00000553256 CDC34P49427 236 aaPredicted RBP13.54□□□□□ -0.24
PTCH1-227ENST00000553256 ZNF726P1Q15940 193 aa13.54□□□□□ -0.24
PTCH1-227ENST00000553256 TMEM78Q5T7P6 136 aa13.54□□□□□ -0.24
PTCH1-227ENST00000553256 SMLR1H3BR10 107 aa13.53□□□□□ -0.24
PTCH1-227ENST00000553256 RNASE4P34096 147 aaKnown RBP13.53□□□□□ -0.24
PTCH1-227ENST00000553256 OR11H4Q8NGC9 324 aa13.53□□□□□ -0.24
PTCH1-227ENST00000553256 RXFP4Q8TDU9 374 aa13.53□□□□□ -0.24
PTCH1-227ENST00000553256 LENEPQ9Y5L5 61 aa13.53□□□□□ -0.24
PTCH1-227ENST00000553256 PGPA6NDG6 321 aa13.52□□□□□ -0.25
PTCH1-227ENST00000553256 MBP02144 154 aa13.52□□□□□ -0.25
PTCH1-227ENST00000553256 HTN3P15516 51 aa13.52□□□□□ -0.25
PTCH1-227ENST00000553256 POM121L12Q8N7R1 296 aa13.52□□□□□ -0.25
PTCH1-227ENST00000553256 TVP23CQ96ET8 276 aa13.52□□□□□ -0.25
PTCH1-227ENST00000553256 C18orf15Q96N68 181 aa13.52□□□□□ -0.25
PTCH1-227ENST00000553256 GPX1P07203 203 aa13.51□□□□□ -0.25
PTCH1-227ENST00000553256 P0DMU3 169 aa13.51□□□□□ -0.25
PTCH1-227ENST00000553256 FAM231AP0DMU4 169 aa13.51□□□□□ -0.25
PTCH1-227ENST00000553256 FAM231CP0DMU5 169 aa13.51□□□□□ -0.25
PTCH1-227ENST00000553256 GCHFRP30047 84 aa13.51□□□□□ -0.25
PTCH1-227ENST00000553256 CSN1S1P47710 185 aa13.51□□□□□ -0.25
PTCH1-227ENST00000553256 Q6AWC8 147 aa13.51□□□□□ -0.25
PTCH1-227ENST00000553256 CCDC28AQ8IWP9 274 aa13.51□□□□□ -0.25
PTCH1-227ENST00000553256 EIF4E3Q8N5X7 224 aaKnown RBP13.51□□□□□ -0.25
PTCH1-227ENST00000553256 GNPNAT1Q96EK6 184 aaPredicted RBP13.51□□□□□ -0.25
PTCH1-227ENST00000553256 TP53TG3Q9ULZ0 132 aa13.51□□□□□ -0.25
PTCH1-227ENST00000553256 ARPC5O15511 151 aa13.5□□□□□ -0.25
PTCH1-227ENST00000553256 ATP5G1P05496 136 aa13.5□□□□□ -0.25
PTCH1-227ENST00000553256 ATP5G3P48201 142 aa13.5□□□□□ -0.25
PTCH1-227ENST00000553256 ST6GAL2Q96JF0 529 aa13.5□□□□□ -0.25
PTCH1-227ENST00000553256 GSN-AS1Q9NRJ2 163 aa13.5□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms