RNA–Protein interactions for RNA: ENST00000552338.5

LIMA1-211, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 555 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-211ENST00000552338 ZFP30Q9Y2G7 519 aa7.08□□□□□ -1.28
LIMA1-211ENST00000552338 SELENOKQ9Y6D0 94 aa7.08□□□□□ -1.28
LIMA1-211ENST00000552338 LY96Q9Y6Y9 160 aa7.08□□□□□ -1.28
LIMA1-211ENST00000552338 SCO2A0A1W2PP80 73 aa7.07□□□□□ -1.28
LIMA1-211ENST00000552338 LTAP01374 205 aa7.07□□□□□ -1.28
LIMA1-211ENST00000552338 C10orf91Q5T1B1 145 aa7.07□□□□□ -1.28
LIMA1-211ENST00000552338 GDF5OSQ5U4N7 250 aa7.07□□□□□ -1.28
LIMA1-211ENST00000552338 EBLN2Q6P2I7 272 aa7.07□□□□□ -1.28
LIMA1-211ENST00000552338 AMTNQ6UX39 209 aa7.07□□□□□ -1.28
LIMA1-211ENST00000552338 GOLT1AQ6ZVE7 132 aa7.07□□□□□ -1.28
LIMA1-211ENST00000552338 TRPT1Q86TN4 253 aaKnown RBP7.07□□□□□ -1.28
LIMA1-211ENST00000552338 COMMD7Q86VX2 200 aa7.07□□□□□ -1.28
LIMA1-211ENST00000552338 OR10J6PQ8NGY7 276 aa7.07□□□□□ -1.28
LIMA1-211ENST00000552338 CITED4Q96RK1 184 aa7.07□□□□□ -1.28
LIMA1-211ENST00000552338 TMEM218A2RU14 115 aa7.06□□□□□ -1.28
LIMA1-211ENST00000552338 CNN1P51911 297 aaKnown RBP7.06□□□□□ -1.28
LIMA1-211ENST00000552338 ZNF138P52744 262 aa7.06□□□□□ -1.28
LIMA1-211ENST00000552338 GNG5P63218 68 aa7.06□□□□□ -1.28
LIMA1-211ENST00000552338 FLI1Q01543 452 aaPredicted RBP7.06□□□□□ -1.28
LIMA1-211ENST00000552338 SAPCD1Q5SSQ6 148 aa7.06□□□□□ -1.28
LIMA1-211ENST00000552338 IGF2BP2-AS1Q96M15 143 aa7.06□□□□□ -1.28
LIMA1-211ENST00000552338 PRR25Q96S07 402 aa7.06□□□□□ -1.28
LIMA1-211ENST00000552338 VGLL1Q99990 258 aa7.06□□□□□ -1.28
LIMA1-211ENST00000552338 PARLQ9H300 379 aa7.06□□□□□ -1.28
LIMA1-211ENST00000552338 PSG8Q9UQ74 426 aa7.06□□□□□ -1.28
LIMA1-211ENST00000552338 DNAH3Q8TD57 4116 aa7.05□□□□□ -1.28
LIMA1-211ENST00000552338 TRBV20OR9-2A0A075B6H5 130 aa7.05□□□□□ -1.28
LIMA1-211ENST00000552338 IGKV2-40A0A087WW87 121 aaPredicted RBP7.05□□□□□ -1.28
LIMA1-211ENST00000552338 KIR2DL5BA0A0G2JN68 375 aa7.05□□□□□ -1.28
LIMA1-211ENST00000552338 KIR2DL5BA0A0G2JPC4 375 aa7.05□□□□□ -1.28
LIMA1-211ENST00000552338 KLLNB2CW77 178 aa7.05□□□□□ -1.28
LIMA1-211ENST00000552338 F6UB75 175 aa7.05□□□□□ -1.28
LIMA1-211ENST00000552338 IGKV2D-40P01614 121 aaPredicted RBP7.05□□□□□ -1.28
LIMA1-211ENST00000552338 IGLV2-8P01709 118 aa7.05□□□□□ -1.28
LIMA1-211ENST00000552338 AMBPP02760 352 aa7.05□□□□□ -1.28
LIMA1-211ENST00000552338 CT45A10P0DMU9 189 aa7.05□□□□□ -1.28
LIMA1-211ENST00000552338 AKR1C3P42330 323 aa7.05□□□□□ -1.28
LIMA1-211ENST00000552338 RPL35P42766 123 aaKnown RBP7.05□□□□□ -1.28
LIMA1-211ENST00000552338 TMEM78Q5T7P6 136 aa7.05□□□□□ -1.28
LIMA1-211ENST00000552338 TMEM183AQ8IXX5 376 aa7.05□□□□□ -1.28
LIMA1-211ENST00000552338 KIR2DL5AQ8N109 375 aa7.05□□□□□ -1.28
LIMA1-211ENST00000552338 KIR2DL5BQ8NHK3 375 aa7.05□□□□□ -1.28
LIMA1-211ENST00000552338 TVP23CQ96ET8 276 aa7.05□□□□□ -1.28
LIMA1-211ENST00000552338 LINC00479Q96M42 142 aa7.05□□□□□ -1.28
LIMA1-211ENST00000552338 SEC11CQ9BY50 192 aa7.05□□□□□ -1.28
LIMA1-211ENST00000552338 ERCC8Q13216 396 aa7.04□□□□□ -1.28
LIMA1-211ENST00000552338 SOHLH1Q5JUK2 328 aa7.04□□□□□ -1.28
LIMA1-211ENST00000552338 MORN3Q6PF18 240 aaPredicted RBP7.04□□□□□ -1.28
LIMA1-211ENST00000552338 Q86TA4 180 aa7.04□□□□□ -1.28
LIMA1-211ENST00000552338 STHQ8IWL8 128 aa7.04□□□□□ -1.28
LIMA1-211ENST00000552338 ZFAND2AQ8N6M9 145 aa7.04□□□□□ -1.28
LIMA1-211ENST00000552338 C20orf144Q9BQM9 153 aa7.04□□□□□ -1.28
LIMA1-211ENST00000552338 DERL1Q9BUN8 251 aa7.04□□□□□ -1.28
LIMA1-211ENST00000552338 TRAV8-1A0A0A6YYK1 113 aa7.03□□□□□ -1.28
LIMA1-211ENST00000552338 TRAV34A0A0B4J273 112 aa7.03□□□□□ -1.28
LIMA1-211ENST00000552338 RBMY1BA6NDE4 496 aaKnown RBP7.03□□□□□ -1.28
LIMA1-211ENST00000552338 RBMY1EA6NEQ0 496 aaKnown RBP7.03□□□□□ -1.28
LIMA1-211ENST00000552338 KNCNA6PVL3 124 aa7.03□□□□□ -1.28
LIMA1-211ENST00000552338 KRBOX1C9JBD0 128 aa7.03□□□□□ -1.28
LIMA1-211ENST00000552338 CRXO43186 299 aaPredicted RBP7.03□□□□□ -1.28
LIMA1-211ENST00000552338 GCGP01275 180 aa7.03□□□□□ -1.28
LIMA1-211ENST00000552338 GIG44P09565 113 aaPredicted RBP7.03□□□□□ -1.28
LIMA1-211ENST00000552338 RBMY1DP0C7P1 496 aaKnown RBP7.03□□□□□ -1.28
LIMA1-211ENST00000552338 TSPOP30536 169 aa7.03□□□□□ -1.28
LIMA1-211ENST00000552338 CDKN1BP46527 198 aa7.03□□□□□ -1.28
LIMA1-211ENST00000552338 DEFB1P60022 68 aa7.03□□□□□ -1.28
LIMA1-211ENST00000552338 NUTF2P61970 127 aaKnown RBP7.03□□□□□ -1.28
LIMA1-211ENST00000552338 UBE2G1P62253 170 aa7.03□□□□□ -1.28
LIMA1-211ENST00000552338 HIST1H1AQ02539 215 aaPredicted RBP7.03□□□□□ -1.28
LIMA1-211ENST00000552338 ZNF124Q15973 351 aa7.03□□□□□ -1.28
LIMA1-211ENST00000552338 ACTL10Q5JWF8 245 aa7.03□□□□□ -1.28
LIMA1-211ENST00000552338 Q6AWC8 147 aa7.03□□□□□ -1.28
LIMA1-211ENST00000552338 BAGE2Q86Y30 109 aa7.03□□□□□ -1.28
LIMA1-211ENST00000552338 DEFB125Q8N687 156 aa7.03□□□□□ -1.28
LIMA1-211ENST00000552338 SDF2L1Q9HCN8 221 aa7.03□□□□□ -1.28
LIMA1-211ENST00000552338 TREM1Q9NP99 234 aa7.03□□□□□ -1.28
LIMA1-211ENST00000552338 BIN3Q9NQY0 253 aa7.03□□□□□ -1.28
LIMA1-211ENST00000552338 CARHSP1Q9Y2V2 147 aaKnown RBP7.03□□□□□ -1.28
LIMA1-211ENST00000552338 PKD1L1Q8TDX9 2849 aa7.02□□□□□ -1.29
LIMA1-211ENST00000552338 ZNF727A8MUV8 499 aa7.02□□□□□ -1.29
LIMA1-211ENST00000552338 UBE2CO00762 179 aa7.02□□□□□ -1.29
LIMA1-211ENST00000552338 ZNF324O75467 553 aaPredicted RBP7.02□□□□□ -1.29
LIMA1-211ENST00000552338 SFTA3P0C7M3 94 aa7.02□□□□□ -1.29
LIMA1-211ENST00000552338 ZNF705DP0CH99 300 aaPredicted RBP7.02□□□□□ -1.29
LIMA1-211ENST00000552338 ZNF705BP0CI00 300 aaPredicted RBP7.02□□□□□ -1.29
LIMA1-211ENST00000552338 IGHV4-30-4P0DP06 118 aa7.02□□□□□ -1.29
LIMA1-211ENST00000552338 ADCYAP1P18509 176 aa7.02□□□□□ -1.29
LIMA1-211ENST00000552338 LEPP41159 167 aa7.02□□□□□ -1.29
LIMA1-211ENST00000552338 PNRC1Q12796 327 aaPredicted RBP7.02□□□□□ -1.29
LIMA1-211ENST00000552338 TMEM241Q24JQ0 296 aa7.02□□□□□ -1.29
LIMA1-211ENST00000552338 ZNF674Q2M3X9 581 aa7.02□□□□□ -1.29
LIMA1-211ENST00000552338 CSNK1G2-AS1Q8NCQ2 148 aa7.02□□□□□ -1.29
LIMA1-211ENST00000552338 OCC1Q8TAD7 63 aa7.02□□□□□ -1.29
LIMA1-211ENST00000552338 SMIM7Q9BQ49 75 aa7.02□□□□□ -1.29
LIMA1-211ENST00000552338 LINC00467Q9BRT7 94 aa7.02□□□□□ -1.29
LIMA1-211ENST00000552338 NDFIP1Q9BT67 221 aa7.02□□□□□ -1.29
LIMA1-211ENST00000552338 WFDC10AQ9H1F0 79 aa7.02□□□□□ -1.29
LIMA1-211ENST00000552338 SRD5A3Q9H8P0 318 aa7.02□□□□□ -1.29
LIMA1-211ENST00000552338 NAT8Q9UHE5 227 aa7.02□□□□□ -1.29
LIMA1-211ENST00000552338 LOC102724200A0A096LPH7 203 aaPredicted RBP7.01□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms