RNA–Protein interactions for RNA: ENST00000546744.5

PTCH1-212, Transcript of patched 1, humanhuman

TSL 2

Gene PTCH1, Length 4,389 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-212ENST00000546744 CFC1P0CG37 223 aa10.29□□□□□ -0.76
PTCH1-212ENST00000546744 TMEM258P61165 79 aa10.29□□□□□ -0.76
PTCH1-212ENST00000546744 C3orf36Q3SXR2 165 aa10.29□□□□□ -0.76
PTCH1-212ENST00000546744 LENEPQ9Y5L5 61 aa10.29□□□□□ -0.76
PTCH1-212ENST00000546744 CACNA1HO95180 2353 aa10.29□□□□□ -0.76
PTCH1-212ENST00000546744 CHD9Q3L8U1 2897 aa10.29□□□□□ -0.76
PTCH1-212ENST00000546744 SAP30O75446 220 aa10.29□□□□□ -0.76
PTCH1-212ENST00000546744 TCF15Q12870 199 aa10.29□□□□□ -0.76
PTCH1-212ENST00000546744 LINC01587Q99440 93 aa10.29□□□□□ -0.76
PTCH1-212ENST00000546744 M0R1W7 72 aa10.29□□□□□ -0.76
PTCH1-212ENST00000546744 GATD1Q8NB37 220 aa10.29□□□□□ -0.76
PTCH1-212ENST00000546744 DENND4AQ7Z401 1863 aa10.29□□□□□ -0.76
PTCH1-212ENST00000546744 CUL9Q8IWT3 2517 aa10.28□□□□□ -0.76
PTCH1-212ENST00000546744 FXYD7P58549 80 aa10.28□□□□□ -0.76
PTCH1-212ENST00000546744 BSPH1Q075Z2 132 aa10.28□□□□□ -0.76
PTCH1-212ENST00000546744 ZNF415Q09FC8 603 aa10.28□□□□□ -0.76
PTCH1-212ENST00000546744 TMEM200BQ69YZ2 307 aa10.28□□□□□ -0.76
PTCH1-212ENST00000546744 C14orf178Q8N769 122 aaPredicted RBP10.28□□□□□ -0.76
PTCH1-212ENST00000546744 C22orf46C9J442 243 aa10.28□□□□□ -0.76
PTCH1-212ENST00000546744 PRIMA1Q86XR5 153 aa10.28□□□□□ -0.76
PTCH1-212ENST00000546744 SMIM20Q8N5G0 67 aa10.28□□□□□ -0.76
PTCH1-212ENST00000546744 NTN5Q8WTR8 489 aaPredicted RBP10.28□□□□□ -0.76
PTCH1-212ENST00000546744 RNASE6Q93091 150 aaKnown RBP10.28□□□□□ -0.76
PTCH1-212ENST00000546744 USMG5Q96IX5 58 aa10.28□□□□□ -0.76
PTCH1-212ENST00000546744 AKAP6Q13023 2319 aa10.28□□□□□ -0.76
PTCH1-212ENST00000546744 MUC22E2RYF6 1773 aaPredicted RBP10.28□□□□□ -0.76
PTCH1-212ENST00000546744 NUPR1O60356 82 aa10.28□□□□□ -0.76
PTCH1-212ENST00000546744 GATA4P43694 442 aa10.28□□□□□ -0.76
PTCH1-212ENST00000546744 C15orf32Q32M92 178 aa10.28□□□□□ -0.76
PTCH1-212ENST00000546744 ABCA1O95477 2261 aa10.28□□□□□ -0.76
PTCH1-212ENST00000546744 J3QQQ9 107 aa10.28□□□□□ -0.76
PTCH1-212ENST00000546744 PRSS57Q6UWY2 283 aa10.28□□□□□ -0.76
PTCH1-212ENST00000546744 Q8TAT8 98 aa10.28□□□□□ -0.76
PTCH1-212ENST00000546744 GAFA1Q96PS6 74 aa10.28□□□□□ -0.76
PTCH1-212ENST00000546744 TP53TG1Q9Y2A0 90 aa10.28□□□□□ -0.76
PTCH1-212ENST00000546744 C9orf172C9J069 976 aa10.27□□□□□ -0.76
PTCH1-212ENST00000546744 E9PLN8 166 aa10.27□□□□□ -0.76
PTCH1-212ENST00000546744 PAX4O43316 350 aa10.27□□□□□ -0.76
PTCH1-212ENST00000546744 IGKV3-20P01619 116 aa10.27□□□□□ -0.76
PTCH1-212ENST00000546744 ZNF833PQ6ZTB9 187 aa10.27□□□□□ -0.76
PTCH1-212ENST00000546744 RNF166Q96A37 237 aaPredicted RBP10.27□□□□□ -0.76
PTCH1-212ENST00000546744 ZNF71Q9NQZ8 489 aaPredicted RBP10.27□□□□□ -0.76
PTCH1-212ENST00000546744 IGHV3OR16-12A0A075B7B8 117 aa10.27□□□□□ -0.77
PTCH1-212ENST00000546744 IGKV3OR2-268A0A0C4DH90 116 aa10.27□□□□□ -0.77
PTCH1-212ENST00000546744 SRRM4A7MD48 611 aaKnown RBP10.27□□□□□ -0.77
PTCH1-212ENST00000546744 H3BRN7 92 aa10.27□□□□□ -0.77
PTCH1-212ENST00000546744 TMEM178BH3BS89 294 aa10.27□□□□□ -0.77
PTCH1-212ENST00000546744 FAM27E3Q08E93 113 aa10.27□□□□□ -0.77
PTCH1-212ENST00000546744 FOXI1Q12951 378 aa10.27□□□□□ -0.77
PTCH1-212ENST00000546744 TDRG1Q3Y452 100 aa10.27□□□□□ -0.77
PTCH1-212ENST00000546744 CHD3Q12873 2000 aaKnown RBP10.27□□□□□ -0.77
PTCH1-212ENST00000546744 FAM223BA6NKX1 122 aa10.26□□□□□ -0.77
PTCH1-212ENST00000546744 AMTNQ6UX39 209 aa10.26□□□□□ -0.77
PTCH1-212ENST00000546744 FAM223AQ8IWN6 122 aa10.26□□□□□ -0.77
PTCH1-212ENST00000546744 FDCSPQ8NFU4 85 aa10.26□□□□□ -0.77
PTCH1-212ENST00000546744 CARD19Q96LW7 228 aa10.26□□□□□ -0.77
PTCH1-212ENST00000546744 SS18L2Q9UHA2 77 aa10.26□□□□□ -0.77
PTCH1-212ENST00000546744 COL4A3Q01955 1670 aa10.26□□□□□ -0.77
PTCH1-212ENST00000546744 TRAV13-2A0A0B4J235 113 aa10.26□□□□□ -0.77
PTCH1-212ENST00000546744 RPL32P62910 135 aaKnown RBP10.26□□□□□ -0.77
PTCH1-212ENST00000546744 TMEM105Q8N8V8 129 aa10.26□□□□□ -0.77
PTCH1-212ENST00000546744 JPT2Q9H910 190 aa10.26□□□□□ -0.77
PTCH1-212ENST00000546744 METRNQ9UJH8 293 aa10.26□□□□□ -0.77
PTCH1-212ENST00000546744 C1orf122Q6ZSJ8 110 aa10.26□□□□□ -0.77
PTCH1-212ENST00000546744 MRPL53Q96EL3 112 aaKnown RBP10.26□□□□□ -0.77
PTCH1-212ENST00000546744 LAMA3Q16787 3333 aa10.25□□□□□ -0.77
PTCH1-212ENST00000546744 BUB1B-PAK6H3BSN5 160 aa10.25□□□□□ -0.77
PTCH1-212ENST00000546744 IGKV1-16P04430 117 aa10.25□□□□□ -0.77
PTCH1-212ENST00000546744 MRPL23Q16540 153 aaKnown RBP10.25□□□□□ -0.77
PTCH1-212ENST00000546744 MED12Q93074 2177 aa10.25□□□□□ -0.77
PTCH1-212ENST00000546744 IGHV3-64A0A075B6Q5 118 aa10.25□□□□□ -0.77
PTCH1-212ENST00000546744 H3BT86 120 aa10.25□□□□□ -0.77
PTCH1-212ENST00000546744 FOXG1P55316 489 aaPredicted RBP10.25□□□□□ -0.77
PTCH1-212ENST00000546744 RHOHQ15669 191 aa10.25□□□□□ -0.77
PTCH1-212ENST00000546744 SPTAN1Q13813 2472 aaKnown RBP10.25□□□□□ -0.77
PTCH1-212ENST00000546744 SPTBN1Q01082 2364 aaKnown RBP10.25□□□□□ -0.77
PTCH1-212ENST00000546744 PRSS47A8MTI9 375 aa10.25□□□□□ -0.77
PTCH1-212ENST00000546744 RBX1P62877 108 aa10.25□□□□□ -0.77
PTCH1-212ENST00000546744 C8orf31Q8N9H6 132 aa10.25□□□□□ -0.77
PTCH1-212ENST00000546744 Q8TCH9 128 aa10.25□□□□□ -0.77
PTCH1-212ENST00000546744 TRAV26-1A0A087WT03 109 aa10.24□□□□□ -0.77
PTCH1-212ENST00000546744 TRAV41A0A0B4J266 112 aa10.24□□□□□ -0.77
PTCH1-212ENST00000546744 LAMTOR3Q9UHA4 124 aa10.24□□□□□ -0.77
PTCH1-212ENST00000546744 TRBV6-1A0A0K0K1D8 114 aa10.24□□□□□ -0.77
PTCH1-212ENST00000546744 K7ERJ3 54 aa10.24□□□□□ -0.77
PTCH1-212ENST00000546744 RSPO1Q2MKA7 263 aaPredicted RBP10.24□□□□□ -0.77
PTCH1-212ENST00000546744 C5orf24Q7Z6I8 188 aa10.24□□□□□ -0.77
PTCH1-212ENST00000546744 DTX2Q86UW9 622 aa10.24□□□□□ -0.77
PTCH1-212ENST00000546744 YPEL4Q96NS1 127 aa10.24□□□□□ -0.77
PTCH1-212ENST00000546744 C11orf1Q9H5F2 150 aa10.24□□□□□ -0.77
PTCH1-212ENST00000546744 DKK2Q9UBU2 259 aa10.24□□□□□ -0.77
PTCH1-212ENST00000546744 TRGV2A0A075B6R0 118 aa10.24□□□□□ -0.77
PTCH1-212ENST00000546744 TRAV12-1A0A0B4J245 112 aa10.24□□□□□ -0.77
PTCH1-212ENST00000546744 RBAKDNA6NC62 111 aa10.24□□□□□ -0.77
PTCH1-212ENST00000546744 HS3ST6Q96QI5 342 aa10.24□□□□□ -0.77
PTCH1-212ENST00000546744 NDUFA12Q9UI09 145 aa10.24□□□□□ -0.77
PTCH1-212ENST00000546744 I3L3M4 83 aa10.24□□□□□ -0.77
PTCH1-212ENST00000546744 FOXC1Q12948 553 aa10.24□□□□□ -0.77
PTCH1-212ENST00000546744 MLANAQ16655 118 aa10.24□□□□□ -0.77
PTCH1-212ENST00000546744 PCP2Q8IVA1 136 aa10.24□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 71.5 ms