RNA–Protein interactions for RNA: ENST00000546378.1

HOXC11-202, Transcript of homeobox C11, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXC11, Length 3,261 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11-202ENST00000546378 KLF5Q13887 457 aaPredicted RBP11.54□□□□□ -0.56
HOXC11-202ENST00000546378 PET117Q6UWS5 81 aa11.54□□□□□ -0.56
HOXC11-202ENST00000546378 C2orf91Q6ZV80 131 aa11.54□□□□□ -0.56
HOXC11-202ENST00000546378 NEGR1Q7Z3B1 354 aa11.54□□□□□ -0.56
HOXC11-202ENST00000546378 CHCHD1Q96BP2 118 aaKnown RBP11.54□□□□□ -0.56
HOXC11-202ENST00000546378 M0R381 172 aa11.54□□□□□ -0.56
HOXC11-202ENST00000546378 SRD5A1P18405 259 aa11.54□□□□□ -0.56
HOXC11-202ENST00000546378 ZC2HC1BQ5TFG8 222 aa11.54□□□□□ -0.56
HOXC11-202ENST00000546378 CHODLQ9H9P2 273 aa11.54□□□□□ -0.56
HOXC11-202ENST00000546378 TRAV40A0A0B4J280 105 aa11.53□□□□□ -0.56
HOXC11-202ENST00000546378 ITGB1BP1O14713 200 aa11.53□□□□□ -0.56
HOXC11-202ENST00000546378 COX8AP10176 69 aa11.53□□□□□ -0.56
HOXC11-202ENST00000546378 EGR2P11161 476 aaPredicted RBP11.53□□□□□ -0.56
HOXC11-202ENST00000546378 ZNF80P51504 273 aaPredicted RBP11.53□□□□□ -0.56
HOXC11-202ENST00000546378 CDSNQ15517 529 aa11.53□□□□□ -0.56
HOXC11-202ENST00000546378 RNASE6Q93091 150 aaKnown RBP11.53□□□□□ -0.56
HOXC11-202ENST00000546378 MLST8Q9BVC4 326 aa11.53□□□□□ -0.56
HOXC11-202ENST00000546378 C7orf69Q9H7B7 122 aa11.53□□□□□ -0.56
HOXC11-202ENST00000546378 OTORQ9NRC9 128 aa11.53□□□□□ -0.56
HOXC11-202ENST00000546378 CD5LO43866 347 aa11.53□□□□□ -0.56
HOXC11-202ENST00000546378 FABP2P12104 132 aa11.53□□□□□ -0.56
HOXC11-202ENST00000546378 ATP5L2Q7Z4Y8 100 aa11.53□□□□□ -0.56
HOXC11-202ENST00000546378 ABCA2Q9BZC7 2435 aa11.53□□□□□ -0.56
HOXC11-202ENST00000546378 TEX48A0A1B0GUV7 120 aa11.52□□□□□ -0.56
HOXC11-202ENST00000546378 CLEC3BP05452 202 aa11.52□□□□□ -0.56
HOXC11-202ENST00000546378 ETDBQ3ZM63 59 aa11.52□□□□□ -0.56
HOXC11-202ENST00000546378 VKORC1Q9BQB6 163 aa11.52□□□□□ -0.56
HOXC11-202ENST00000546378 PRAC2D3DTV9 90 aa11.52□□□□□ -0.57
HOXC11-202ENST00000546378 H3BMG7 143 aa11.52□□□□□ -0.57
HOXC11-202ENST00000546378 MGPP08493 103 aa11.52□□□□□ -0.57
HOXC11-202ENST00000546378 LOC107984156A0A0G2JMH3 177 aa11.52□□□□□ -0.57
HOXC11-202ENST00000546378 C19orf71A6NCJ1 209 aa11.52□□□□□ -0.57
HOXC11-202ENST00000546378 THBDP07204 575 aa11.52□□□□□ -0.57
HOXC11-202ENST00000546378 FAM162BQ5T6X4 162 aa11.52□□□□□ -0.57
HOXC11-202ENST00000546378 ARL17AQ8IVW1 177 aa11.52□□□□□ -0.57
HOXC11-202ENST00000546378 JKAMPQ9P055 326 aa11.52□□□□□ -0.57
HOXC11-202ENST00000546378 ZNF462Q96JM2 2506 aa11.51□□□□□ -0.57
HOXC11-202ENST00000546378 ABCA12Q86UK0 2595 aa11.51□□□□□ -0.57
HOXC11-202ENST00000546378 TRBV19A0A075B6N1 114 aa11.51□□□□□ -0.57
HOXC11-202ENST00000546378 VSTM5A8MXK1 200 aa11.51□□□□□ -0.57
HOXC11-202ENST00000546378 MC5RP33032 325 aa11.51□□□□□ -0.57
HOXC11-202ENST00000546378 POU2AF1Q16633 256 aa11.51□□□□□ -0.57
HOXC11-202ENST00000546378 SAMD5Q5TGI4 173 aa11.51□□□□□ -0.57
HOXC11-202ENST00000546378 ZNF502Q8TBZ5 544 aa11.51□□□□□ -0.57
HOXC11-202ENST00000546378 ZNF418Q8TF45 676 aaPredicted RBP11.51□□□□□ -0.57
HOXC11-202ENST00000546378 WIPF2Q8TF74 440 aaPredicted RBP11.51□□□□□ -0.57
HOXC11-202ENST00000546378 TMEM158Q8WZ71 300 aa11.51□□□□□ -0.57
HOXC11-202ENST00000546378 ARPC1AQ92747 370 aa11.51□□□□□ -0.57
HOXC11-202ENST00000546378 IGKV3-20P01619 116 aa11.51□□□□□ -0.57
HOXC11-202ENST00000546378 HTN1P15515 57 aa11.51□□□□□ -0.57
HOXC11-202ENST00000546378 FAM71F2Q6NXP2 309 aa11.51□□□□□ -0.57
HOXC11-202ENST00000546378 HIST1H4GQ99525 98 aa11.51□□□□□ -0.57
HOXC11-202ENST00000546378 LRRK2Q5S007 2527 aa11.51□□□□□ -0.57
HOXC11-202ENST00000546378 E7EQL1 145 aa11.5□□□□□ -0.57
HOXC11-202ENST00000546378 HBDP02042 147 aa11.5□□□□□ -0.57
HOXC11-202ENST00000546378 CFAP46Q8IYW2 2715 aa11.5□□□□□ -0.57
HOXC11-202ENST00000546378 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP11.5□□□□□ -0.57
HOXC11-202ENST00000546378 NDUFS7O75251 213 aa11.5□□□□□ -0.57
HOXC11-202ENST00000546378 H3BVH4 76 aa11.5□□□□□ -0.57
HOXC11-202ENST00000546378 IGLV2-11P01706 119 aa11.5□□□□□ -0.57
HOXC11-202ENST00000546378 SPANXN1Q5VSR9 72 aa11.5□□□□□ -0.57
HOXC11-202ENST00000546378 MRPL52Q86TS9 123 aaKnown RBP11.5□□□□□ -0.57
HOXC11-202ENST00000546378 TRGV9Q99603 122 aa11.5□□□□□ -0.57
HOXC11-202ENST00000546378 CSTL1Q9H114 145 aa11.5□□□□□ -0.57
HOXC11-202ENST00000546378 CYSLTR1Q9Y271 337 aa11.5□□□□□ -0.57
HOXC11-202ENST00000546378 FSTL3O95633 263 aa11.49□□□□□ -0.57
HOXC11-202ENST00000546378 LGALS7P47929 136 aa11.49□□□□□ -0.57
HOXC11-202ENST00000546378 IL17RELQ6ZVW7 336 aa11.49□□□□□ -0.57
HOXC11-202ENST00000546378 PRSS22Q9GZN4 317 aa11.49□□□□□ -0.57
HOXC11-202ENST00000546378 UBTD1Q9HAC8 227 aa11.49□□□□□ -0.57
HOXC11-202ENST00000546378 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP11.49□□□□□ -0.57
HOXC11-202ENST00000546378 SMAD7O15105 426 aaKnown RBP11.49□□□□□ -0.57
HOXC11-202ENST00000546378 TRGV3P03979 118 aa11.49□□□□□ -0.57
HOXC11-202ENST00000546378 WFDC2Q14508 124 aa11.49□□□□□ -0.57
HOXC11-202ENST00000546378 TMEM238C9JI98 176 aa11.48□□□□□ -0.57
HOXC11-202ENST00000546378 BUB1B-PAK6H3BSN5 160 aa11.48□□□□□ -0.57
HOXC11-202ENST00000546378 APOMO95445 188 aa11.48□□□□□ -0.57
HOXC11-202ENST00000546378 TMEM219Q86XT9 240 aa11.48□□□□□ -0.57
HOXC11-202ENST00000546378 ZNF491Q8N8L2 437 aa11.48□□□□□ -0.57
HOXC11-202ENST00000546378 NDFIP1Q9BT67 221 aa11.48□□□□□ -0.57
HOXC11-202ENST00000546378 IGSF10Q6WRI0 2623 aa11.48□□□□□ -0.57
HOXC11-202ENST00000546378 NOTCH2Q04721 2471 aa11.48□□□□□ -0.57
HOXC11-202ENST00000546378 IGHV3-64A0A075B6Q5 118 aa11.48□□□□□ -0.57
HOXC11-202ENST00000546378 LINC01545Q5VT33 79 aa11.48□□□□□ -0.57
HOXC11-202ENST00000546378 CLEC19AQ6UXS0 136 aa11.48□□□□□ -0.57
HOXC11-202ENST00000546378 SIGLEC15Q6ZMC9 328 aa11.48□□□□□ -0.57
HOXC11-202ENST00000546378 SRSF8Q9BRL6 282 aaKnown RBP11.48□□□□□ -0.57
HOXC11-202ENST00000546378 TMEM8BA6NDV4 472 aa11.48□□□□□ -0.57
HOXC11-202ENST00000546378 S100A4P26447 101 aaKnown RBP11.48□□□□□ -0.57
HOXC11-202ENST00000546378 RASL11AQ6T310 242 aa11.48□□□□□ -0.57
HOXC11-202ENST00000546378 G3V318 75 aa11.47□□□□□ -0.57
HOXC11-202ENST00000546378 SMIM13P0DJ93 91 aa11.47□□□□□ -0.57
HOXC11-202ENST00000546378 MYCNOSP40205 109 aa11.47□□□□□ -0.57
HOXC11-202ENST00000546378 CR1LQ2VPA4 569 aa11.47□□□□□ -0.57
HOXC11-202ENST00000546378 SCGB1D4Q6XE38 83 aa11.47□□□□□ -0.57
HOXC11-202ENST00000546378 THAP8Q8NA92 274 aa11.47□□□□□ -0.57
HOXC11-202ENST00000546378 NAV2Q8IVL1 2488 aa11.47□□□□□ -0.57
HOXC11-202ENST00000546378 VPS13CQ709C8 3753 aa11.47□□□□□ -0.57
HOXC11-202ENST00000546378 A0A096LNJ9 63 aa11.47□□□□□ -0.57
HOXC11-202ENST00000546378 CD3EP07766 207 aa11.47□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms