RNA–Protein interactions for RNA: ENST00000544996.1

CCDC78-216, Transcript of coiled-coil domain containing 78, humanhuman

TSL 4

Gene CCDC78, Length 551 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC78-216ENST00000544996 IGKV2-40A0A087WW87 121 aaPredicted RBP11.2□□□□□ -0.62
CCDC78-216ENST00000544996 BORCS7-ASMTA0A0B4J1R7 106 aa11.2□□□□□ -0.62
CCDC78-216ENST00000544996 TRAV12-3A0A0B4J271 114 aa11.2□□□□□ -0.62
CCDC78-216ENST00000544996 IGKV2D-40P01614 121 aaPredicted RBP11.2□□□□□ -0.62
CCDC78-216ENST00000544996 MBP02144 154 aa11.2□□□□□ -0.62
CCDC78-216ENST00000544996 ATP6V0CP27449 155 aa11.2□□□□□ -0.62
CCDC78-216ENST00000544996 SERF2P84101 59 aa11.2□□□□□ -0.62
CCDC78-216ENST00000544996 RXFP4Q8TDU9 374 aa11.2□□□□□ -0.62
CCDC78-216ENST00000544996 TMEM263Q8WUH6 116 aaKnown RBP11.2□□□□□ -0.62
CCDC78-216ENST00000544996 NDUFAF3Q9BU61 184 aa11.2□□□□□ -0.62
CCDC78-216ENST00000544996 Q9H3A6 140 aa11.2□□□□□ -0.62
CCDC78-216ENST00000544996 LYSTQ99698 3801 aa11.2□□□□□ -0.62
CCDC78-216ENST00000544996 RNF222A6NCQ9 220 aa11.19□□□□□ -0.62
CCDC78-216ENST00000544996 GPX1P07203 203 aa11.19□□□□□ -0.62
CCDC78-216ENST00000544996 NMBP08949 121 aa11.19□□□□□ -0.62
CCDC78-216ENST00000544996 HTN3P15516 51 aa11.19□□□□□ -0.62
CCDC78-216ENST00000544996 FAM74A1Q5RGS3 127 aa11.19□□□□□ -0.62
CCDC78-216ENST00000544996 GNPNAT1Q96EK6 184 aaPredicted RBP11.19□□□□□ -0.62
CCDC78-216ENST00000544996 FAM210BQ96KR6 192 aa11.19□□□□□ -0.62
CCDC78-216ENST00000544996 VGLL1Q99990 258 aa11.19□□□□□ -0.62
CCDC78-216ENST00000544996 PYGO2Q9BRQ0 406 aa11.19□□□□□ -0.62
CCDC78-216ENST00000544996 TIMM8BQ9Y5J9 83 aaPredicted RBP11.19□□□□□ -0.62
CCDC78-216ENST00000544996 C7orf71A4D174 169 aa11.18□□□□□ -0.62
CCDC78-216ENST00000544996 KLLNB2CW77 178 aa11.18□□□□□ -0.62
CCDC78-216ENST00000544996 EIF3GO75821 320 aaKnown RBP eCLIP11.18□□□□□ -0.62
CCDC78-216ENST00000544996 DEFB130BP0DP73 79 aa11.18□□□□□ -0.62
CCDC78-216ENST00000544996 DEFB130AP0DP74 79 aa11.18□□□□□ -0.62
CCDC78-216ENST00000544996 CDC34P49427 236 aaPredicted RBP11.18□□□□□ -0.62
CCDC78-216ENST00000544996 RNASE8Q8TDE3 154 aaKnown RBP11.18□□□□□ -0.62
CCDC78-216ENST00000544996 FAM19A4Q96LR4 140 aa11.18□□□□□ -0.62
CCDC78-216ENST00000544996 OTORQ9NRC9 128 aa11.18□□□□□ -0.62
CCDC78-216ENST00000544996 PLAC8L1A1L4L8 177 aa11.17□□□□□ -0.62
CCDC78-216ENST00000544996 RBAKDNA6NC62 111 aa11.17□□□□□ -0.62
CCDC78-216ENST00000544996 HMGB3O15347 200 aaKnown RBP11.17□□□□□ -0.62
CCDC78-216ENST00000544996 ARPC5O15511 151 aa11.17□□□□□ -0.62
CCDC78-216ENST00000544996 CRISP2P16562 243 aa11.17□□□□□ -0.62
CCDC78-216ENST00000544996 RNASE4P34096 147 aaKnown RBP11.17□□□□□ -0.62
CCDC78-216ENST00000544996 ZNF138P52744 262 aa11.17□□□□□ -0.62
CCDC78-216ENST00000544996 RPL7L1Q6DKI1 246 aaKnown RBP11.17□□□□□ -0.62
CCDC78-216ENST00000544996 CMTM2Q8TAZ6 248 aa11.17□□□□□ -0.62
CCDC78-216ENST00000544996 RAB24Q969Q5 203 aa11.17□□□□□ -0.62
CCDC78-216ENST00000544996 HYLS1Q96M11 299 aa11.17□□□□□ -0.62
CCDC78-216ENST00000544996 ZNF492Q9P255 531 aa11.17□□□□□ -0.62
CCDC78-216ENST00000544996 PLECQ15149 4684 aaKnown RBP11.17□□□□□ -0.62
CCDC78-216ENST00000544996 RYR2Q92736 4967 aa11.16□□□□□ -0.62
CCDC78-216ENST00000544996 TRBV7-9A0A0J9YWB2 115 aa11.16□□□□□ -0.62
CCDC78-216ENST00000544996 PGPA6NDG6 321 aa11.16□□□□□ -0.62
CCDC78-216ENST00000544996 TAAR5O14804 337 aa11.16□□□□□ -0.62
CCDC78-216ENST00000544996 CD300CQ08708 224 aa11.16□□□□□ -0.62
CCDC78-216ENST00000544996 ACTR3CQ9C0K3 210 aaPredicted RBP11.16□□□□□ -0.62
CCDC78-216ENST00000544996 SH3BGRL3Q9H299 93 aa11.16□□□□□ -0.62
CCDC78-216ENST00000544996 NOP10Q9NPE3 64 aaKnown RBP11.16□□□□□ -0.62
CCDC78-216ENST00000544996 ALMS1Q8TCU4 4167 aa11.16□□□□□ -0.62
CCDC78-216ENST00000544996 DNAH1Q9P2D7 4330 aa11.16□□□□□ -0.62
CCDC78-216ENST00000544996 SNURFLB1AK76 121 aa11.15□□□□□ -0.62
CCDC78-216ENST00000544996 DIRC3C9JPN6 131 aa11.15□□□□□ -0.62
CCDC78-216ENST00000544996 G3V3Q6 166 aa11.15□□□□□ -0.62
CCDC78-216ENST00000544996 STAG3L2P0CL84 134 aa11.15□□□□□ -0.62
CCDC78-216ENST00000544996 STAG3L3P0CL85 134 aa11.15□□□□□ -0.62
CCDC78-216ENST00000544996 ARL14EPLP0DKL9 152 aa11.15□□□□□ -0.62
CCDC78-216ENST00000544996 BTN1A1Q13410 526 aa11.15□□□□□ -0.62
CCDC78-216ENST00000544996 CBY3A6NI87 242 aa11.14□□□□□ -0.63
CCDC78-216ENST00000544996 ZNF324O75467 553 aaPredicted RBP11.14□□□□□ -0.63
CCDC78-216ENST00000544996 P0DMU3 169 aa11.14□□□□□ -0.63
CCDC78-216ENST00000544996 FAM231AP0DMU4 169 aa11.14□□□□□ -0.63
CCDC78-216ENST00000544996 FAM231CP0DMU5 169 aa11.14□□□□□ -0.63
CCDC78-216ENST00000544996 ZFAND2AQ8N6M9 145 aa11.14□□□□□ -0.63
CCDC78-216ENST00000544996 ARL6IP6Q8N6S5 226 aa11.14□□□□□ -0.63
CCDC78-216ENST00000544996 ZNF680Q8NEM1 530 aa11.14□□□□□ -0.63
CCDC78-216ENST00000544996 Q8TAT8 98 aa11.14□□□□□ -0.63
CCDC78-216ENST00000544996 CXorf1O96002 111 aa11.13□□□□□ -0.63
CCDC78-216ENST00000544996 ATP5G1P05496 136 aa11.13□□□□□ -0.63
CCDC78-216ENST00000544996 ATP5G3P48201 142 aa11.13□□□□□ -0.63
CCDC78-216ENST00000544996 EIF4E3Q8N5X7 224 aaKnown RBP11.13□□□□□ -0.63
CCDC78-216ENST00000544996 LINC00467Q9BRT7 94 aa11.13□□□□□ -0.63
CCDC78-216ENST00000544996 RPH3ALQ9UNE2 315 aa11.13□□□□□ -0.63
CCDC78-216ENST00000544996 LENEPQ9Y5L5 61 aa11.13□□□□□ -0.63
CCDC78-216ENST00000544996 F5H768 121 aa11.12□□□□□ -0.63
CCDC78-216ENST00000544996 SMLR1H3BR10 107 aa11.12□□□□□ -0.63
CCDC78-216ENST00000544996 RGS13O14921 159 aa11.12□□□□□ -0.63
CCDC78-216ENST00000544996 GCHFRP30047 84 aa11.12□□□□□ -0.63
CCDC78-216ENST00000544996 TMEM88Q6PEY1 159 aa11.12□□□□□ -0.63
CCDC78-216ENST00000544996 TMED6Q8WW62 240 aa11.12□□□□□ -0.63
CCDC78-216ENST00000544996 TMEM167BQ9NRX6 74 aa11.12□□□□□ -0.63
CCDC78-216ENST00000544996 DAZ2Q13117 558 aaKnown RBP11.11□□□□□ -0.63
CCDC78-216ENST00000544996 ANXA2RQ3ZCQ2 193 aa11.11□□□□□ -0.63
CCDC78-216ENST00000544996 AKR1C8PQ5T2L2 129 aa11.11□□□□□ -0.63
CCDC78-216ENST00000544996 PRR9Q5T870 116 aa11.11□□□□□ -0.63
CCDC78-216ENST00000544996 IQCF2Q8IXL9 164 aa11.11□□□□□ -0.63
CCDC78-216ENST00000544996 ST6GAL2Q96JF0 529 aa11.11□□□□□ -0.63
CCDC78-216ENST00000544996 IGHV1OR15-1A0A075B7D0 117 aa11.1□□□□□ -0.63
CCDC78-216ENST00000544996 ZNF345Q14585 488 aa11.1□□□□□ -0.63
CCDC78-216ENST00000544996 GOLT1AQ6ZVE7 132 aa11.1□□□□□ -0.63
CCDC78-216ENST00000544996 C15orf53Q8NAA6 179 aa11.1□□□□□ -0.63
CCDC78-216ENST00000544996 C5orf17Q8NAS9 161 aa11.1□□□□□ -0.63
CCDC78-216ENST00000544996 SUN5Q8TC36 379 aa11.1□□□□□ -0.63
CCDC78-216ENST00000544996 ARPC5LQ9BPX5 153 aa11.1□□□□□ -0.63
CCDC78-216ENST00000544996 GSN-AS1Q9NRJ2 163 aa11.1□□□□□ -0.63
CCDC78-216ENST00000544996 CTXND1A0A1B0GTU2 59 aa11.09□□□□□ -0.63
CCDC78-216ENST00000544996 SERTM2A0A1B0GWG4 89 aa11.09□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 56.8 ms