RNA–Protein interactions for RNA: ENST00000542845.3

LIMS1-214, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 5

Gene LIMS1, Length 727 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-214ENST00000542845 TP53RKQ96S44 253 aa3.09□□□□□ -1.91
LIMS1-214ENST00000542845 MGLLQ99685 303 aa3.09□□□□□ -1.91
LIMS1-214ENST00000542845 C20orf144Q9BQM9 153 aa3.09□□□□□ -1.91
LIMS1-214ENST00000542845 TXNDC17Q9BRA2 123 aa3.09□□□□□ -1.91
LIMS1-214ENST00000542845 SLC25A31Q9H0C2 315 aa3.09□□□□□ -1.91
LIMS1-214ENST00000542845 AUNIPQ9H7T9 357 aa3.09□□□□□ -1.91
LIMS1-214ENST00000542845 CTNNBIP1Q9NSA3 81 aaPredicted RBP3.09□□□□□ -1.91
LIMS1-214ENST00000542845 FKBP14Q9NWM8 211 aa3.09□□□□□ -1.91
LIMS1-214ENST00000542845 SCN3BQ9NY72 215 aa3.09□□□□□ -1.91
LIMS1-214ENST00000542845 RPH3ALQ9UNE2 315 aa3.09□□□□□ -1.91
LIMS1-214ENST00000542845 WDR83OSQ9Y284 106 aa3.09□□□□□ -1.91
LIMS1-214ENST00000542845 TMEM56-RWDD3S4R434 201 aa3.09□□□□□ -1.91
LIMS1-214ENST00000542845 A0A0D9SG52 128 aa3.08□□□□□ -1.92
LIMS1-214ENST00000542845 C3orf85A0A1B0GTC6 90 aa3.08□□□□□ -1.92
LIMS1-214ENST00000542845 PRSS46E5RG02 174 aa3.08□□□□□ -1.92
LIMS1-214ENST00000542845 SPINK4O60575 86 aa3.08□□□□□ -1.92
LIMS1-214ENST00000542845 CXCL3P19876 107 aa3.08□□□□□ -1.92
LIMS1-214ENST00000542845 TAS2R46P59540 309 aa3.08□□□□□ -1.92
LIMS1-214ENST00000542845 MXD1Q05195 221 aa3.08□□□□□ -1.92
LIMS1-214ENST00000542845 MLLT11Q13015 90 aaPredicted RBP3.08□□□□□ -1.92
LIMS1-214ENST00000542845 MEF2DQ14814 521 aa3.08□□□□□ -1.92
LIMS1-214ENST00000542845 LINC01556Q5JQF7 62 aa3.08□□□□□ -1.92
LIMS1-214ENST00000542845 FFAR4Q5NUL3 377 aa3.08□□□□□ -1.92
LIMS1-214ENST00000542845 STEAP1BQ6NZ63 245 aa3.08□□□□□ -1.92
LIMS1-214ENST00000542845 ZNF680Q8NEM1 530 aa3.08□□□□□ -1.92
LIMS1-214ENST00000542845 ZNF479Q96JC4 524 aa3.08□□□□□ -1.92
LIMS1-214ENST00000542845 GPR82Q96P67 336 aa3.08□□□□□ -1.92
LIMS1-214ENST00000542845 PYGO2Q9BRQ0 406 aa3.08□□□□□ -1.92
LIMS1-214ENST00000542845 PAXXQ9BUH6 204 aa3.08□□□□□ -1.92
LIMS1-214ENST00000542845 TMEM147Q9BVK8 224 aa3.08□□□□□ -1.92
LIMS1-214ENST00000542845 S100A14Q9HCY8 104 aa3.08□□□□□ -1.92
LIMS1-214ENST00000542845 NDUFA13Q9P0J0 144 aa3.08□□□□□ -1.92
LIMS1-214ENST00000542845 TP53TG3Q9ULZ0 132 aa3.08□□□□□ -1.92
LIMS1-214ENST00000542845 COX11Q9Y6N1 276 aa3.08□□□□□ -1.92
LIMS1-214ENST00000542845 IGLV5-37A0A075B6J1 123 aa3.07□□□□□ -1.92
LIMS1-214ENST00000542845 IGKV2D-24A0A075B6R9 120 aa3.07□□□□□ -1.92
LIMS1-214ENST00000542845 IGKV1OR2-108A0A075B7D4 117 aa3.07□□□□□ -1.92
LIMS1-214ENST00000542845 LINC00854A0A1B0GVQ3 168 aa3.07□□□□□ -1.92
LIMS1-214ENST00000542845 PRAC2D3DTV9 90 aa3.07□□□□□ -1.92
LIMS1-214ENST00000542845 H3BTX0 84 aa3.07□□□□□ -1.92
LIMS1-214ENST00000542845 NOL3O60936 208 aaKnown RBP3.07□□□□□ -1.92
LIMS1-214ENST00000542845 PITX3O75364 302 aa3.07□□□□□ -1.92
LIMS1-214ENST00000542845 ORM1P02763 201 aa3.07□□□□□ -1.92
LIMS1-214ENST00000542845 RNASE4P34096 147 aaKnown RBP3.07□□□□□ -1.92
LIMS1-214ENST00000542845 LEPP41159 167 aa3.07□□□□□ -1.92
LIMS1-214ENST00000542845 PIGPP57054 158 aa3.07□□□□□ -1.92
LIMS1-214ENST00000542845 LGI3Q8N145 548 aa3.07□□□□□ -1.92
LIMS1-214ENST00000542845 EIF4E3Q8N5X7 224 aaKnown RBP3.07□□□□□ -1.92
LIMS1-214ENST00000542845 C11orf72Q8NBR9 251 aa3.07□□□□□ -1.92
LIMS1-214ENST00000542845 NEXN-AS1Q8NBZ9 246 aa3.07□□□□□ -1.92
LIMS1-214ENST00000542845 BPIFCQ8NFQ6 507 aa3.07□□□□□ -1.92
LIMS1-214ENST00000542845 OR4D5Q8NGN0 318 aa3.07□□□□□ -1.92
LIMS1-214ENST00000542845 ATP6V0E2Q8NHE4 81 aa3.07□□□□□ -1.92
LIMS1-214ENST00000542845 ZNF431Q8TF32 576 aaPredicted RBP3.07□□□□□ -1.92
LIMS1-214ENST00000542845 LINC01600Q96MT4 127 aa3.07□□□□□ -1.92
LIMS1-214ENST00000542845 GPN1Q9HCN4 374 aaPredicted RBP3.07□□□□□ -1.92
LIMS1-214ENST00000542845 BLOC1S6Q9UL45 172 aa3.07□□□□□ -1.92
LIMS1-214ENST00000542845 SSR3Q9UNL2 185 aa3.07□□□□□ -1.92
LIMS1-214ENST00000542845 MUC2Q02817 5179 aa3.07□□□□□ -1.92
LIMS1-214ENST00000542845 TRAV8-3A0A0A6YYJ7 113 aa3.06□□□□□ -1.92
LIMS1-214ENST00000542845 IGHV3-16A0A0C4DH30 117 aa3.06□□□□□ -1.92
LIMS1-214ENST00000542845 TRDV1A0A1B0GX56 115 aa3.06□□□□□ -1.92
LIMS1-214ENST00000542845 RNF222A6NCQ9 220 aa3.06□□□□□ -1.92
LIMS1-214ENST00000542845 ATP5HO75947 161 aa3.06□□□□□ -1.92
LIMS1-214ENST00000542845 OR5G3P0C626 314 aa3.06□□□□□ -1.92
LIMS1-214ENST00000542845 CT45A10P0DMU9 189 aa3.06□□□□□ -1.92
LIMS1-214ENST00000542845 RPL7P18124 248 aaKnown RBP3.06□□□□□ -1.92
LIMS1-214ENST00000542845 GPX4P36969 197 aaPredicted RBP3.06□□□□□ -1.92
LIMS1-214ENST00000542845 ERCC8Q13216 396 aa3.06□□□□□ -1.92
LIMS1-214ENST00000542845 ZNF846Q147U1 533 aa3.06□□□□□ -1.92
LIMS1-214ENST00000542845 NMSQ5H8A3 153 aa3.06□□□□□ -1.92
LIMS1-214ENST00000542845 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.06□□□□□ -1.92
LIMS1-214ENST00000542845 DAZ4Q86SG3 579 aaKnown RBP3.06□□□□□ -1.92
LIMS1-214ENST00000542845 SLC25A38Q96DW6 304 aa3.06□□□□□ -1.92
LIMS1-214ENST00000542845 S100A16Q96FQ6 103 aaKnown RBP3.06□□□□□ -1.92
LIMS1-214ENST00000542845 LINC00477Q96M19 166 aa3.06□□□□□ -1.92
LIMS1-214ENST00000542845 TRGV9Q99603 122 aa3.06□□□□□ -1.92
LIMS1-214ENST00000542845 VGLL1Q99990 258 aa3.06□□□□□ -1.92
LIMS1-214ENST00000542845 RBKSQ9H477 322 aa3.06□□□□□ -1.92
LIMS1-214ENST00000542845 DAZ3Q9NR90 486 aaKnown RBP3.06□□□□□ -1.92
LIMS1-214ENST00000542845 COPZ2Q9P299 210 aa3.06□□□□□ -1.92
LIMS1-214ENST00000542845 CRCT1Q9UGL9 99 aa3.06□□□□□ -1.92
LIMS1-214ENST00000542845 TPRKBQ9Y3C4 175 aa3.06□□□□□ -1.92
LIMS1-214ENST00000542845 U3KQ87 197 aa3.06□□□□□ -1.92
LIMS1-214ENST00000542845 TEX13DA0A0J9YY54 714 aaPredicted RBP3.05□□□□□ -1.92
LIMS1-214ENST00000542845 C7orf71A4D174 169 aa3.05□□□□□ -1.92
LIMS1-214ENST00000542845 PMS2P5A8MQ11 134 aa3.05□□□□□ -1.92
LIMS1-214ENST00000542845 GGTLC3B5MD39 225 aa3.05□□□□□ -1.92
LIMS1-214ENST00000542845 MPDU1O75352 247 aa3.05□□□□□ -1.92
LIMS1-214ENST00000542845 CFDP00746 253 aaPredicted RBP3.05□□□□□ -1.92
LIMS1-214ENST00000542845 GPX1P07203 203 aa3.05□□□□□ -1.92
LIMS1-214ENST00000542845 S100A7P31151 101 aa3.05□□□□□ -1.92
LIMS1-214ENST00000542845 SDC2P34741 201 aa3.05□□□□□ -1.92
LIMS1-214ENST00000542845 PRSS3P35030 304 aa3.05□□□□□ -1.92
LIMS1-214ENST00000542845 RCVRNP35243 200 aa3.05□□□□□ -1.92
LIMS1-214ENST00000542845 TCL1AP56279 114 aa3.05□□□□□ -1.92
LIMS1-214ENST00000542845 BTN1A1Q13410 526 aa3.05□□□□□ -1.92
LIMS1-214ENST00000542845 ACOT7LQ6ZUV0 252 aa3.05□□□□□ -1.92
LIMS1-214ENST00000542845 OR10P1Q8NGE3 313 aa3.05□□□□□ -1.92
LIMS1-214ENST00000542845 DTD1Q8TEA8 209 aa3.05□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 59.9 ms