RNA–Protein interactions for RNA: ENST00000541410.1

CLIP1-216, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,379 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-216ENST00000541410 CD33P20138 364 aa11.09□□□□□ -0.63
CLIP1-216ENST00000541410 IQCJQ1A5X6 159 aa11.09□□□□□ -0.63
CLIP1-216ENST00000541410 C1orf194Q5T5A4 169 aa11.09□□□□□ -0.63
CLIP1-216ENST00000541410 C16orf54Q6UWD8 224 aa11.09□□□□□ -0.63
CLIP1-216ENST00000541410 SIGLECL1Q8N7X8 197 aa11.09□□□□□ -0.63
CLIP1-216ENST00000541410 GLMPQ8WWB7 406 aa11.09□□□□□ -0.63
CLIP1-216ENST00000541410 RCHY1Q96PM5 261 aa11.09□□□□□ -0.63
CLIP1-216ENST00000541410 SH2D1AO60880 128 aa11.09□□□□□ -0.63
CLIP1-216ENST00000541410 ZNF253O75346 499 aa11.09□□□□□ -0.63
CLIP1-216ENST00000541410 RBPMS2Q6ZRY4 209 aaKnown RBP11.09□□□□□ -0.63
CLIP1-216ENST00000541410 C16orf92Q96LL3 132 aa11.09□□□□□ -0.63
CLIP1-216ENST00000541410 FASNP49327 2511 aaKnown RBP11.08□□□□□ -0.64
CLIP1-216ENST00000541410 ZNF702PQ9H963 129 aa11.08□□□□□ -0.64
CLIP1-216ENST00000541410 HECTD1Q9ULT8 2610 aa11.08□□□□□ -0.64
CLIP1-216ENST00000541410 A0A1B0GXF2 115 aa11.08□□□□□ -0.64
CLIP1-216ENST00000541410 ARMS2P0C7Q2 107 aa11.08□□□□□ -0.64
CLIP1-216ENST00000541410 HBBP68871 147 aa11.08□□□□□ -0.64
CLIP1-216ENST00000541410 CT83Q5H943 113 aa11.08□□□□□ -0.64
CLIP1-216ENST00000541410 PRSS57Q6UWY2 283 aa11.08□□□□□ -0.64
CLIP1-216ENST00000541410 C20orf173Q96LM9 149 aa11.08□□□□□ -0.64
CLIP1-216ENST00000541410 SLC50A1Q9BRV3 221 aa11.08□□□□□ -0.64
CLIP1-216ENST00000541410 PEF1Q9UBV8 284 aaKnown RBP11.08□□□□□ -0.64
CLIP1-216ENST00000541410 C9orf139Q6ZV77 190 aa11.07□□□□□ -0.64
CLIP1-216ENST00000541410 GPHB5Q86YW7 130 aa11.07□□□□□ -0.64
CLIP1-216ENST00000541410 ATP6V0BQ99437 205 aa11.07□□□□□ -0.64
CLIP1-216ENST00000541410 MTORP42345 2549 aa11.07□□□□□ -0.64
CLIP1-216ENST00000541410 FOXA3P55318 350 aaPredicted RBP11.06□□□□□ -0.64
CLIP1-216ENST00000541410 FAM162BQ5T6X4 162 aa11.06□□□□□ -0.64
CLIP1-216ENST00000541410 Q6ZQT7 251 aa11.06□□□□□ -0.64
CLIP1-216ENST00000541410 WIPF2Q8TF74 440 aaPredicted RBP11.06□□□□□ -0.64
CLIP1-216ENST00000541410 TMEM190Q8WZ59 177 aa11.06□□□□□ -0.64
CLIP1-216ENST00000541410 TMEM18Q96B42 140 aa11.06□□□□□ -0.64
CLIP1-216ENST00000541410 RHPN1-AS1Q9BWJ2 59 aa11.06□□□□□ -0.64
CLIP1-216ENST00000541410 AGPAT4-IT1Q9H0P7 198 aa11.06□□□□□ -0.64
CLIP1-216ENST00000541410 UNC79Q9P2D8 2635 aa11.06□□□□□ -0.64
CLIP1-216ENST00000541410 SERTM2A0A1B0GWG4 89 aa11.06□□□□□ -0.64
CLIP1-216ENST00000541410 FAM181BA6NEQ2 426 aa11.06□□□□□ -0.64
CLIP1-216ENST00000541410 J3KRW8 73 aa11.06□□□□□ -0.64
CLIP1-216ENST00000541410 BRI3O95415 125 aa11.06□□□□□ -0.64
CLIP1-216ENST00000541410 OR4B1Q8NGF8 309 aa11.06□□□□□ -0.64
CLIP1-216ENST00000541410 TMEM189A5PLL7 270 aa11.05□□□□□ -0.64
CLIP1-216ENST00000541410 SAPCD1Q5SSQ6 148 aa11.05□□□□□ -0.64
CLIP1-216ENST00000541410 GFRA4Q9GZZ7 299 aa11.05□□□□□ -0.64
CLIP1-216ENST00000541410 COX19Q49B96 90 aa11.05□□□□□ -0.64
CLIP1-216ENST00000541410 C18orf65Q6ZTR6 163 aa11.05□□□□□ -0.64
CLIP1-216ENST00000541410 ZNF738Q8NE65 137 aa11.05□□□□□ -0.64
CLIP1-216ENST00000541410 SETD2Q9BYW2 2564 aaPredicted RBP11.05□□□□□ -0.64
CLIP1-216ENST00000541410 ATP5L2Q7Z4Y8 100 aa11.04□□□□□ -0.64
CLIP1-216ENST00000541410 DAZ1Q9NQZ3 744 aaKnown RBP11.04□□□□□ -0.64
CLIP1-216ENST00000541410 GSN-AS1Q9NRJ2 163 aa11.04□□□□□ -0.64
CLIP1-216ENST00000541410 IGHV7-4-1A0A0J9YVY3 117 aa11.04□□□□□ -0.64
CLIP1-216ENST00000541410 A8MWP6 167 aa11.04□□□□□ -0.64
CLIP1-216ENST00000541410 F6UB75 175 aa11.04□□□□□ -0.64
CLIP1-216ENST00000541410 ORM1P02763 201 aa11.04□□□□□ -0.64
CLIP1-216ENST00000541410 Q0VG73 95 aa11.04□□□□□ -0.64
CLIP1-216ENST00000541410 FAM209BQ5JX69 171 aa11.04□□□□□ -0.64
CLIP1-216ENST00000541410 RASL11AQ6T310 242 aa11.04□□□□□ -0.64
CLIP1-216ENST00000541410 WFDC3Q8IUB2 231 aa11.04□□□□□ -0.64
CLIP1-216ENST00000541410 WNK1Q9H4A3 2382 aa11.03□□□□□ -0.64
CLIP1-216ENST00000541410 M0QZ24 198 aa11.03□□□□□ -0.64
CLIP1-216ENST00000541410 DEFB136Q30KP8 78 aa11.03□□□□□ -0.64
CLIP1-216ENST00000541410 LYZL1Q6UWQ5 148 aa11.03□□□□□ -0.64
CLIP1-216ENST00000541410 FAM19A2Q8N3H0 131 aa11.03□□□□□ -0.64
CLIP1-216ENST00000541410 C18orf32Q8TCD1 76 aa11.03□□□□□ -0.64
CLIP1-216ENST00000541410 NDFIP1Q9BT67 221 aa11.03□□□□□ -0.64
CLIP1-216ENST00000541410 NOTCH2Q04721 2471 aa11.03□□□□□ -0.64
CLIP1-216ENST00000541410 AKAP9Q99996 3911 aa11.03□□□□□ -0.64
CLIP1-216ENST00000541410 A0A1B0GUT8 65 aa11.03□□□□□ -0.64
CLIP1-216ENST00000541410 PMCHP20382 165 aa11.03□□□□□ -0.64
CLIP1-216ENST00000541410 SAMD10Q9BYL1 202 aa11.03□□□□□ -0.64
CLIP1-216ENST00000541410 AGRNO00468 2067 aa11.02□□□□□ -0.64
CLIP1-216ENST00000541410 TMEM213A2RRL7 107 aa11.02□□□□□ -0.65
CLIP1-216ENST00000541410 TFPI2P48307 235 aa11.02□□□□□ -0.65
CLIP1-216ENST00000541410 FAM106AQ4KMX7 169 aa11.02□□□□□ -0.65
CLIP1-216ENST00000541410 TMEM78Q5T7P6 136 aa11.02□□□□□ -0.65
CLIP1-216ENST00000541410 PRDM13Q9H4Q3 707 aa11.02□□□□□ -0.65
CLIP1-216ENST00000541410 IGHV4OR15-8A0A075B7B6 117 aa11.02□□□□□ -0.65
CLIP1-216ENST00000541410 A0A087WW49 117 aa11.02□□□□□ -0.65
CLIP1-216ENST00000541410 A0A1W2PS18 150 aa11.02□□□□□ -0.65
CLIP1-216ENST00000541410 FAM231BA6NCW3 169 aa11.02□□□□□ -0.65
CLIP1-216ENST00000541410 SYNJ2BPP57105 145 aa11.02□□□□□ -0.65
CLIP1-216ENST00000541410 ZNF575Q86XF7 245 aa11.02□□□□□ -0.65
CLIP1-216ENST00000541410 ALKBH7Q9BT30 221 aaPredicted RBP11.02□□□□□ -0.65
CLIP1-216ENST00000541410 JOSD1Q15040 202 aaPredicted RBP11.01□□□□□ -0.65
CLIP1-216ENST00000541410 ARL6IP6Q8N6S5 226 aa11.01□□□□□ -0.65
CLIP1-216ENST00000541410 DUX3Q96PT4 197 aa11.01□□□□□ -0.65
CLIP1-216ENST00000541410 NRN1Q9NPD7 142 aa11.01□□□□□ -0.65
CLIP1-216ENST00000541410 SMPXQ9UHP9 88 aa11.01□□□□□ -0.65
CLIP1-216ENST00000541410 HAX1O00165 279 aa11.01□□□□□ -0.65
CLIP1-216ENST00000541410 SOCS3O14543 225 aa11.01□□□□□ -0.65
CLIP1-216ENST00000541410 NTF3P20783 257 aa11.01□□□□□ -0.65
CLIP1-216ENST00000541410 ZNF138P52744 262 aa11.01□□□□□ -0.65
CLIP1-216ENST00000541410 FOXE3Q13461 319 aa11.01□□□□□ -0.65
CLIP1-216ENST00000541410 OR10J3Q5JRS4 329 aa11.01□□□□□ -0.65
CLIP1-216ENST00000541410 Q6ZWC4 215 aa11.01□□□□□ -0.65
CLIP1-216ENST00000541410 ZNF580Q9UK33 172 aa11.01□□□□□ -0.65
CLIP1-216ENST00000541410 RNF114Q9Y508 228 aa11.01□□□□□ -0.65
CLIP1-216ENST00000541410 KHDC1LQ5JSQ8 128 aa11□□□□□ -0.65
CLIP1-216ENST00000541410 WFDC12Q8WWY7 111 aa11□□□□□ -0.65
CLIP1-216ENST00000541410 C11orf21Q9P2W6 132 aa11□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms