RNA–Protein interactions for RNA: ENST00000540931.1

CLSTN3-210, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-210ENST00000540931 CYB561D1Q8N8Q1 229 aa12.84□□□□□ -0.35
CLSTN3-210ENST00000540931 NDFIP1Q9BT67 221 aa12.84□□□□□ -0.35
CLSTN3-210ENST00000540931 GOLT1BQ9Y3E0 138 aa12.84□□□□□ -0.35
CLSTN3-210ENST00000540931 EIF3GO75821 320 aaKnown RBP eCLIP12.83□□□□□ -0.36
CLSTN3-210ENST00000540931 INSP01308 110 aa12.83□□□□□ -0.36
CLSTN3-210ENST00000540931 TCRAP04437 139 aa12.83□□□□□ -0.36
CLSTN3-210ENST00000540931 CST9LP1Q5W188 147 aa12.83□□□□□ -0.36
CLSTN3-210ENST00000540931 AMTNQ6UX39 209 aa12.83□□□□□ -0.36
CLSTN3-210ENST00000540931 IGF2BP2-AS1Q96M15 143 aa12.83□□□□□ -0.36
CLSTN3-210ENST00000540931 TMPRSS5Q9H3S3 457 aa12.83□□□□□ -0.36
CLSTN3-210ENST00000540931 ZNF492Q9P255 531 aa12.83□□□□□ -0.36
CLSTN3-210ENST00000540931 SMIM9A6NGZ8 99 aa12.82□□□□□ -0.36
CLSTN3-210ENST00000540931 IGKV3-20P01619 116 aa12.82□□□□□ -0.36
CLSTN3-210ENST00000540931 UBE2G2P60604 165 aa12.82□□□□□ -0.36
CLSTN3-210ENST00000540931 AGPAT4-IT1Q9H0P7 198 aa12.82□□□□□ -0.36
CLSTN3-210ENST00000540931 COL7A1Q02388 2944 aa12.81□□□□□ -0.36
CLSTN3-210ENST00000540931 GGTLC3B5MD39 225 aa12.81□□□□□ -0.36
CLSTN3-210ENST00000540931 PRAC2D3DTV9 90 aa12.81□□□□□ -0.36
CLSTN3-210ENST00000540931 PAGE4O60829 102 aa12.81□□□□□ -0.36
CLSTN3-210ENST00000540931 CRISP2P16562 243 aa12.81□□□□□ -0.36
CLSTN3-210ENST00000540931 SAPCD1Q5SSQ6 148 aa12.81□□□□□ -0.36
CLSTN3-210ENST00000540931 TMEM75Q8N9X5 138 aa12.81□□□□□ -0.36
CLSTN3-210ENST00000540931 ZNF680Q8NEM1 530 aa12.81□□□□□ -0.36
CLSTN3-210ENST00000540931 LYPD6BQ8NI32 183 aa12.81□□□□□ -0.36
CLSTN3-210ENST00000540931 NEU1Q99519 415 aa12.81□□□□□ -0.36
CLSTN3-210ENST00000540931 ASCL2Q99929 193 aa12.81□□□□□ -0.36
CLSTN3-210ENST00000540931 XCL2Q9UBD3 114 aa12.81□□□□□ -0.36
CLSTN3-210ENST00000540931 PDE6DO43924 150 aa12.8□□□□□ -0.36
CLSTN3-210ENST00000540931 NDUFS6O75380 124 aaKnown RBP12.8□□□□□ -0.36
CLSTN3-210ENST00000540931 ZNF705DP0CH99 300 aaPredicted RBP12.8□□□□□ -0.36
CLSTN3-210ENST00000540931 ZNF705BP0CI00 300 aaPredicted RBP12.8□□□□□ -0.36
CLSTN3-210ENST00000540931 RAB14P61106 215 aa12.8□□□□□ -0.36
CLSTN3-210ENST00000540931 DEFB135Q30KP9 77 aa12.8□□□□□ -0.36
CLSTN3-210ENST00000540931 GOLT1AQ6ZVE7 132 aa12.8□□□□□ -0.36
CLSTN3-210ENST00000540931 CCDC28AQ8IWP9 274 aa12.8□□□□□ -0.36
CLSTN3-210ENST00000540931 RARRES2Q99969 163 aa12.8□□□□□ -0.36
CLSTN3-210ENST00000540931 SLC35B3Q9H1N7 401 aa12.8□□□□□ -0.36
CLSTN3-210ENST00000540931 GNG13Q9P2W3 67 aa12.8□□□□□ -0.36
CLSTN3-210ENST00000540931 YTHDF2Q9Y5A9 579 aaKnown RBP12.8□□□□□ -0.36
CLSTN3-210ENST00000540931 U3KQK5 164 aa12.8□□□□□ -0.36
CLSTN3-210ENST00000540931 AGRNO00468 2067 aa12.79□□□□□ -0.36
CLSTN3-210ENST00000540931 IGKV2-40A0A087WW87 121 aaPredicted RBP12.79□□□□□ -0.36
CLSTN3-210ENST00000540931 C11orf94C9JXX5 98 aa12.79□□□□□ -0.36
CLSTN3-210ENST00000540931 PEX7O00628 323 aa12.79□□□□□ -0.36
CLSTN3-210ENST00000540931 IGKV2D-40P01614 121 aaPredicted RBP12.79□□□□□ -0.36
CLSTN3-210ENST00000540931 CT45A10P0DMU9 189 aa12.79□□□□□ -0.36
CLSTN3-210ENST00000540931 MIFP14174 115 aa12.79□□□□□ -0.36
CLSTN3-210ENST00000540931 DEFB1P60022 68 aa12.79□□□□□ -0.36
CLSTN3-210ENST00000540931 SPINK13Q1W4C9 94 aa12.79□□□□□ -0.36
CLSTN3-210ENST00000540931 FMC1Q96HJ9 113 aa12.79□□□□□ -0.36
CLSTN3-210ENST00000540931 OVOL2Q9BRP0 275 aa12.79□□□□□ -0.36
CLSTN3-210ENST00000540931 NIPSNAP3BQ9BS92 247 aa12.79□□□□□ -0.36
CLSTN3-210ENST00000540931 TMEM208Q9BTX3 173 aa12.79□□□□□ -0.36
CLSTN3-210ENST00000540931 VAX2Q9UIW0 290 aa12.79□□□□□ -0.36
CLSTN3-210ENST00000540931 RPH3ALQ9UNE2 315 aa12.79□□□□□ -0.36
CLSTN3-210ENST00000540931 GPX1P07203 203 aa12.78□□□□□ -0.36
CLSTN3-210ENST00000540931 GIG44P09565 113 aaPredicted RBP12.78□□□□□ -0.36
CLSTN3-210ENST00000540931 UBE2G1P62253 170 aa12.78□□□□□ -0.36
CLSTN3-210ENST00000540931 ZNF767PQ75MW2 155 aa12.78□□□□□ -0.36
CLSTN3-210ENST00000540931 CSNK1G2-AS1Q8NCQ2 148 aa12.78□□□□□ -0.36
CLSTN3-210ENST00000540931 FAM19A4Q96LR4 140 aa12.78□□□□□ -0.36
CLSTN3-210ENST00000540931 VGLL1Q99990 258 aa12.78□□□□□ -0.36
CLSTN3-210ENST00000540931 ZFP30Q9Y2G7 519 aa12.78□□□□□ -0.36
CLSTN3-210ENST00000540931 TRBV6-1A0A0K0K1D8 114 aa12.77□□□□□ -0.37
CLSTN3-210ENST00000540931 A0A1B0GV50 99 aa12.77□□□□□ -0.37
CLSTN3-210ENST00000540931 TMEM189A5PLL7 270 aa12.77□□□□□ -0.37
CLSTN3-210ENST00000540931 KLLNB2CW77 178 aa12.77□□□□□ -0.37
CLSTN3-210ENST00000540931 H7BYZ3 331 aa12.77□□□□□ -0.37
CLSTN3-210ENST00000540931 BCL2P10415 239 aa12.77□□□□□ -0.37
CLSTN3-210ENST00000540931 FLI1Q01543 452 aaPredicted RBP12.77□□□□□ -0.37
CLSTN3-210ENST00000540931 MEF2BQ02080 365 aaPredicted RBP12.77□□□□□ -0.37
CLSTN3-210ENST00000540931 ZNF705AQ6ZN79 300 aaPredicted RBP12.77□□□□□ -0.37
CLSTN3-210ENST00000540931 OR11H2Q8NH07 326 aa12.77□□□□□ -0.37
CLSTN3-210ENST00000540931 M0R2Z0 102 aa12.76□□□□□ -0.37
CLSTN3-210ENST00000540931 AKR1C3P42330 323 aa12.76□□□□□ -0.37
CLSTN3-210ENST00000540931 ERCC8Q13216 396 aa12.76□□□□□ -0.37
CLSTN3-210ENST00000540931 KLF12Q9Y4X4 402 aa12.76□□□□□ -0.37
CLSTN3-210ENST00000540931 C7orf71A4D174 169 aa12.75□□□□□ -0.37
CLSTN3-210ENST00000540931 IL17DQ8TAD2 202 aa12.75□□□□□ -0.37
CLSTN3-210ENST00000540931 PYGO2Q9BRQ0 406 aa12.75□□□□□ -0.37
CLSTN3-210ENST00000540931 SMDT1Q9H4I9 107 aa12.75□□□□□ -0.37
CLSTN3-210ENST00000540931 TREM1Q9NP99 234 aa12.75□□□□□ -0.37
CLSTN3-210ENST00000540931 PSG8Q9UQ74 426 aa12.75□□□□□ -0.37
CLSTN3-210ENST00000540931 TEX48A0A1B0GUV7 120 aa12.74□□□□□ -0.37
CLSTN3-210ENST00000540931 CRXO43186 299 aaPredicted RBP12.74□□□□□ -0.37
CLSTN3-210ENST00000540931 FXYD7P58549 80 aa12.74□□□□□ -0.37
CLSTN3-210ENST00000540931 TAS2R60P59551 318 aa12.74□□□□□ -0.37
CLSTN3-210ENST00000540931 GNG5P63218 68 aa12.74□□□□□ -0.37
CLSTN3-210ENST00000540931 CCL20P78556 96 aa12.74□□□□□ -0.37
CLSTN3-210ENST00000540931 TMEM183BQ1AE95 376 aa12.74□□□□□ -0.37
CLSTN3-210ENST00000540931 ZNF493Q6ZR52 646 aa12.74□□□□□ -0.37
CLSTN3-210ENST00000540931 C11orf68Q9H3H3 251 aaKnown RBP12.74□□□□□ -0.37
CLSTN3-210ENST00000540931 DNAH9Q9NYC9 4486 aa12.73□□□□□ -0.37
CLSTN3-210ENST00000540931 RBFOX3A6NFN3 312 aa12.73□□□□□ -0.37
CLSTN3-210ENST00000540931 ATP5G3P48201 142 aa12.73□□□□□ -0.37
CLSTN3-210ENST00000540931 RRN3P1Q2M238 152 aa12.73□□□□□ -0.37
CLSTN3-210ENST00000540931 SMUG1Q53HV7 270 aa12.73□□□□□ -0.37
CLSTN3-210ENST00000540931 C11orf52Q96A22 123 aa12.73□□□□□ -0.37
CLSTN3-210ENST00000540931 SMIM12Q96EX1 92 aa12.73□□□□□ -0.37
CLSTN3-210ENST00000540931 LINC01587Q99440 93 aa12.73□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 70.2 ms