RNA–Protein interactions for RNA: ENST00000540797.5

USP3-204, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2 BASIC

Gene USP3, Length 5,474 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-204ENST00000540797 AMN1Q8IY45 258 aa11.18□□□□□ -0.62
USP3-204ENST00000540797 LINC00518Q8N0U6 118 aa11.18□□□□□ -0.62
USP3-204ENST00000540797 TRAV12-2A0A075B6T6 113 aa11.17□□□□□ -0.62
USP3-204ENST00000540797 HOXD3P31249 432 aaPredicted RBP11.17□□□□□ -0.62
USP3-204ENST00000540797 SEC11AP67812 179 aa11.17□□□□□ -0.62
USP3-204ENST00000540797 SMPXQ9UHP9 88 aa11.17□□□□□ -0.62
USP3-204ENST00000540797 WIPF3A6NGB9 483 aa11.17□□□□□ -0.62
USP3-204ENST00000540797 LGALS1P09382 135 aaKnown RBP11.17□□□□□ -0.62
USP3-204ENST00000540797 SMKR1H3BMG3 65 aa11.17□□□□□ -0.62
USP3-204ENST00000540797 HAPLN4Q86UW8 402 aa11.17□□□□□ -0.62
USP3-204ENST00000540797 TMEM14CQ9P0S9 112 aa11.17□□□□□ -0.62
USP3-204ENST00000540797 AZU1P20160 251 aa11.17□□□□□ -0.62
USP3-204ENST00000540797 GAGE12BA1L429 117 aa11.16□□□□□ -0.62
USP3-204ENST00000540797 GAGE7O76087 117 aa11.16□□□□□ -0.62
USP3-204ENST00000540797 GAGE12FP0CL80 117 aa11.16□□□□□ -0.62
USP3-204ENST00000540797 GAGE12GP0CL81 117 aa11.16□□□□□ -0.62
USP3-204ENST00000540797 GAGE12IP0CL82 117 aa11.16□□□□□ -0.62
USP3-204ENST00000540797 COL4A3Q01955 1670 aa11.16□□□□□ -0.62
USP3-204ENST00000540797 TRPT1Q86TN4 253 aaKnown RBP11.16□□□□□ -0.62
USP3-204ENST00000540797 THAP8Q8NA92 274 aa11.16□□□□□ -0.62
USP3-204ENST00000540797 GAGE12JA6NER3 117 aa11.16□□□□□ -0.62
USP3-204ENST00000540797 GAGE1Q13065 139 aa11.16□□□□□ -0.62
USP3-204ENST00000540797 GAGE4Q13068 117 aa11.16□□□□□ -0.62
USP3-204ENST00000540797 GAGE5Q13069 117 aa11.16□□□□□ -0.62
USP3-204ENST00000540797 DEFB136Q30KP8 78 aa11.16□□□□□ -0.62
USP3-204ENST00000540797 GAGE13Q4V321 117 aa11.16□□□□□ -0.62
USP3-204ENST00000540797 GFRA4Q9GZZ7 299 aa11.16□□□□□ -0.62
USP3-204ENST00000540797 IGHV3-16A0A0C4DH30 117 aa11.16□□□□□ -0.62
USP3-204ENST00000540797 IGLC7A0M8Q6 106 aa11.16□□□□□ -0.62
USP3-204ENST00000540797 TRAV9-2A0A087WT02 112 aa11.16□□□□□ -0.62
USP3-204ENST00000540797 TRAV13-1A0A0B4J241 112 aa11.16□□□□□ -0.62
USP3-204ENST00000540797 SSBP2P81877 361 aaPredicted RBP11.15□□□□□ -0.62
USP3-204ENST00000540797 OR2K2Q8NGT1 345 aa11.15□□□□□ -0.62
USP3-204ENST00000540797 ZNF492Q9P255 531 aa11.15□□□□□ -0.62
USP3-204ENST00000540797 FOXE3Q13461 319 aa11.15□□□□□ -0.62
USP3-204ENST00000540797 RASL10AQ92737 203 aa11.15□□□□□ -0.62
USP3-204ENST00000540797 BLCAPP62952 87 aa11.15□□□□□ -0.62
USP3-204ENST00000540797 SS18Q15532 418 aa11.15□□□□□ -0.62
USP3-204ENST00000540797 GHRHP01286 108 aa11.15□□□□□ -0.63
USP3-204ENST00000540797 A0A1B0GUS0 222 aa11.14□□□□□ -0.63
USP3-204ENST00000540797 C6orf226Q5I0X4 101 aa11.14□□□□□ -0.63
USP3-204ENST00000540797 S100A7L2Q5SY68 101 aa11.14□□□□□ -0.63
USP3-204ENST00000540797 TMEM158Q8WZ71 300 aa11.14□□□□□ -0.63
USP3-204ENST00000540797 ZMAT4Q9H898 229 aa11.14□□□□□ -0.63
USP3-204ENST00000540797 ZNF491Q8N8L2 437 aa11.14□□□□□ -0.63
USP3-204ENST00000540797 PRR25Q96S07 402 aa11.14□□□□□ -0.63
USP3-204ENST00000540797 ANXA2RQ3ZCQ2 193 aa11.14□□□□□ -0.63
USP3-204ENST00000540797 Q6ZSR3 168 aa11.14□□□□□ -0.63
USP3-204ENST00000540797 NPBQ8NG41 125 aa11.14□□□□□ -0.63
USP3-204ENST00000540797 A8MWV9 139 aa11.13□□□□□ -0.63
USP3-204ENST00000540797 IGHV7-81A0A0B4J1V7 117 aa11.13□□□□□ -0.63
USP3-204ENST00000540797 ZFP36P26651 326 aaKnown RBP11.13□□□□□ -0.63
USP3-204ENST00000540797 COL4A4P53420 1690 aaPredicted RBP11.13□□□□□ -0.63
USP3-204ENST00000540797 OTOGLQ3ZCN5 2332 aa11.13□□□□□ -0.63
USP3-204ENST00000540797 TMEM213A2RRL7 107 aa11.13□□□□□ -0.63
USP3-204ENST00000540797 LINC00587B1AMM8 73 aa11.13□□□□□ -0.63
USP3-204ENST00000540797 MRAPQ8TCY5 172 aa11.13□□□□□ -0.63
USP3-204ENST00000540797 PLEKHB2Q96CS7 222 aa11.13□□□□□ -0.63
USP3-204ENST00000540797 ATP6V0BQ99437 205 aa11.13□□□□□ -0.63
USP3-204ENST00000540797 LAMTOR2Q9Y2Q5 125 aa11.13□□□□□ -0.63
USP3-204ENST00000540797 COLCA2A8K830 154 aa11.12□□□□□ -0.63
USP3-204ENST00000540797 GGTLC3B5MD39 225 aa11.12□□□□□ -0.63
USP3-204ENST00000540797 FNDC4Q9H6D8 234 aaPredicted RBP11.12□□□□□ -0.63
USP3-204ENST00000540797 MED13Q9UHV7 2174 aa11.12□□□□□ -0.63
USP3-204ENST00000540797 TNFRSF6BO95407 300 aa11.12□□□□□ -0.63
USP3-204ENST00000540797 NHP2Q9NX24 153 aaKnown RBP11.12□□□□□ -0.63
USP3-204ENST00000540797 C9orf66Q5T8R8 295 aa11.12□□□□□ -0.63
USP3-204ENST00000540797 DMRTA1Q5VZB9 504 aa11.12□□□□□ -0.63
USP3-204ENST00000540797 PGPEP1Q9NXJ5 209 aa11.11□□□□□ -0.63
USP3-204ENST00000540797 PRSS46E5RG02 174 aa11.11□□□□□ -0.63
USP3-204ENST00000540797 SLURP1P55000 103 aa11.11□□□□□ -0.63
USP3-204ENST00000540797 JPT2Q9H910 190 aa11.11□□□□□ -0.63
USP3-204ENST00000540797 SPG11Q96JI7 2443 aa11.11□□□□□ -0.63
USP3-204ENST00000540797 TRBV25-1A0A075B6N4 114 aa11.1□□□□□ -0.63
USP3-204ENST00000540797 PAX4O43316 350 aa11.1□□□□□ -0.63
USP3-204ENST00000540797 FOXI2Q6ZQN5 318 aa11.1□□□□□ -0.63
USP3-204ENST00000540797 CYYR1Q96J86 154 aa11.1□□□□□ -0.63
USP3-204ENST00000540797 ZNF726P1Q15940 193 aa11.1□□□□□ -0.63
USP3-204ENST00000540797 HIST1H2BLQ99880 126 aa11.1□□□□□ -0.63
USP3-204ENST00000540797 CACNA1AO00555 2505 aa11.1□□□□□ -0.63
USP3-204ENST00000540797 FAM231BA6NCW3 169 aa11.1□□□□□ -0.63
USP3-204ENST00000540797 TMEM238C9JI98 176 aa11.1□□□□□ -0.63
USP3-204ENST00000540797 PAX2Q02962 417 aa11.1□□□□□ -0.63
USP3-204ENST00000540797 SFTA2Q6UW10 78 aa11.1□□□□□ -0.63
USP3-204ENST00000540797 LY6G5BQ8NDX9 201 aa11.1□□□□□ -0.63
USP3-204ENST00000540797 CST9LQ9H4G1 147 aa11.1□□□□□ -0.63
USP3-204ENST00000540797 C19orf84I3L1E1 186 aa11.09□□□□□ -0.63
USP3-204ENST00000540797 TYMSP04818 313 aa11.09□□□□□ -0.63
USP3-204ENST00000540797 FXYD5Q96DB9 178 aa11.09□□□□□ -0.63
USP3-204ENST00000540797 RITA1Q96K30 269 aa11.09□□□□□ -0.63
USP3-204ENST00000540797 SHANK1Q9Y566 2161 aa11.09□□□□□ -0.63
USP3-204ENST00000540797 MSMPQ1L6U9 139 aa11.09□□□□□ -0.63
USP3-204ENST00000540797 CT83Q5H943 113 aa11.09□□□□□ -0.63
USP3-204ENST00000540797 NPC2P61916 151 aa11.09□□□□□ -0.63
USP3-204ENST00000540797 ZNRF2Q8NHG8 242 aa11.09□□□□□ -0.63
USP3-204ENST00000540797 C5orf56Q8N8D9 126 aa11.08□□□□□ -0.64
USP3-204ENST00000540797 Q8N9W7 124 aa11.08□□□□□ -0.64
USP3-204ENST00000540797 A0A1B0GWB2 263 aa11.08□□□□□ -0.64
USP3-204ENST00000540797 PRR20EP86478 221 aa11.08□□□□□ -0.64
USP3-204ENST00000540797 PRR20CP86479 221 aa11.08□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms