RNA–Protein interactions for RNA: ENST00000540338.5

CLIP1-213, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 4,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-213ENST00000540338 FAM104BQ5XKR9 115 aa8.37□□□□□ -1.07
CLIP1-213ENST00000540338 SPOCK3Q9BQ16 436 aa8.37□□□□□ -1.07
CLIP1-213ENST00000540338 RHPN1-AS1Q9BWJ2 59 aa8.37□□□□□ -1.07
CLIP1-213ENST00000540338 FREM2Q5SZK8 3169 aa8.37□□□□□ -1.07
CLIP1-213ENST00000540338 H3BUA1 57 aa8.37□□□□□ -1.07
CLIP1-213ENST00000540338 M0R381 172 aa8.37□□□□□ -1.07
CLIP1-213ENST00000540338 HINT1P49773 126 aaPredicted RBP8.37□□□□□ -1.07
CLIP1-213ENST00000540338 BCL6BQ8N143 479 aaPredicted RBP8.37□□□□□ -1.07
CLIP1-213ENST00000540338 A0A1B0GXF2 115 aa8.37□□□□□ -1.07
CLIP1-213ENST00000540338 RNASE4P34096 147 aaKnown RBP8.37□□□□□ -1.07
CLIP1-213ENST00000540338 IL17RELQ6ZVW7 336 aa8.37□□□□□ -1.07
CLIP1-213ENST00000540338 GLMPQ8WWB7 406 aa8.37□□□□□ -1.07
CLIP1-213ENST00000540338 PEF1Q9UBV8 284 aaKnown RBP8.37□□□□□ -1.07
CLIP1-213ENST00000540338 SYS1-DBNDD2H3BUS1 97 aa8.36□□□□□ -1.07
CLIP1-213ENST00000540338 FAM159AQ6UWV7 190 aa8.36□□□□□ -1.07
CLIP1-213ENST00000540338 TEX29Q8N6K0 151 aa8.36□□□□□ -1.07
CLIP1-213ENST00000540338 TP53TG3Q9ULZ0 132 aa8.36□□□□□ -1.07
CLIP1-213ENST00000540338 EGR2P11161 476 aaPredicted RBP8.36□□□□□ -1.07
CLIP1-213ENST00000540338 PAX1P15863 534 aa8.36□□□□□ -1.07
CLIP1-213ENST00000540338 DAZ1Q9NQZ3 744 aaKnown RBP8.36□□□□□ -1.07
CLIP1-213ENST00000540338 AKAP13Q12802 2813 aa8.36□□□□□ -1.07
CLIP1-213ENST00000540338 NCR2O95944 276 aa8.36□□□□□ -1.07
CLIP1-213ENST00000540338 HBDP02042 147 aa8.36□□□□□ -1.07
CLIP1-213ENST00000540338 SRD5A1P18405 259 aa8.36□□□□□ -1.07
CLIP1-213ENST00000540338 CACNG7P62955 275 aa8.36□□□□□ -1.07
CLIP1-213ENST00000540338 GDF5OSQ5U4N7 250 aa8.36□□□□□ -1.07
CLIP1-213ENST00000540338 MAPK1IP1LQ8NDC0 245 aa8.36□□□□□ -1.07
CLIP1-213ENST00000540338 C2orf88Q9BSF0 95 aa8.36□□□□□ -1.07
CLIP1-213ENST00000540338 CSPG4Q6UVK1 2322 aa8.36□□□□□ -1.07
CLIP1-213ENST00000540338 RNF223E7ERA6 249 aa8.36□□□□□ -1.07
CLIP1-213ENST00000540338 FBLN7Q53RD9 439 aa8.36□□□□□ -1.07
CLIP1-213ENST00000540338 ATP6V0BQ99437 205 aa8.36□□□□□ -1.07
CLIP1-213ENST00000540338 GOLT1BQ9Y3E0 138 aa8.36□□□□□ -1.07
CLIP1-213ENST00000540338 BLCAPP62952 87 aa8.35□□□□□ -1.07
CLIP1-213ENST00000540338 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa8.35□□□□□ -1.07
CLIP1-213ENST00000540338 PMCHL2Q9BQD1 86 aa8.35□□□□□ -1.07
CLIP1-213ENST00000540338 AGPAT4-IT1Q9H0P7 198 aa8.35□□□□□ -1.07
CLIP1-213ENST00000540338 NXT2Q9NPJ8 142 aaKnown RBP8.35□□□□□ -1.07
CLIP1-213ENST00000540338 RBAKDNA6NC62 111 aa8.35□□□□□ -1.07
CLIP1-213ENST00000540338 J3QLI3 93 aa8.35□□□□□ -1.07
CLIP1-213ENST00000540338 TCF21O43680 179 aa8.35□□□□□ -1.07
CLIP1-213ENST00000540338 IFI27P40305 119 aaPredicted RBP8.35□□□□□ -1.07
CLIP1-213ENST00000540338 NRGNQ92686 78 aa8.35□□□□□ -1.07
CLIP1-213ENST00000540338 CCDC140Q96MF4 163 aa8.35□□□□□ -1.07
CLIP1-213ENST00000540338 C18orf15Q96N68 181 aa8.35□□□□□ -1.07
CLIP1-213ENST00000540338 MEGF9Q9H1U4 602 aa8.35□□□□□ -1.07
CLIP1-213ENST00000540338 LAMTOR2Q9Y2Q5 125 aa8.35□□□□□ -1.07
CLIP1-213ENST00000540338 IGHV1-24A0A0C4DH33 117 aa8.34□□□□□ -1.07
CLIP1-213ENST00000540338 H3BVH4 76 aa8.34□□□□□ -1.07
CLIP1-213ENST00000540338 IGLV2-11P01706 119 aa8.34□□□□□ -1.07
CLIP1-213ENST00000540338 PRB1P04280 392 aa8.34□□□□□ -1.07
CLIP1-213ENST00000540338 MRPL53Q96EL3 112 aaKnown RBP8.34□□□□□ -1.07
CLIP1-213ENST00000540338 SELENOKQ9Y6D0 94 aa8.34□□□□□ -1.07
CLIP1-213ENST00000540338 DSPP15924 2871 aaKnown RBP8.34□□□□□ -1.07
CLIP1-213ENST00000540338 KIR2DL5BA0A0G2JN68 375 aa8.34□□□□□ -1.07
CLIP1-213ENST00000540338 KIR2DL5BA0A0G2JPC4 375 aa8.34□□□□□ -1.07
CLIP1-213ENST00000540338 NPIPB6E9PJ23 425 aa8.34□□□□□ -1.07
CLIP1-213ENST00000540338 IGKV3-20P01619 116 aa8.34□□□□□ -1.07
CLIP1-213ENST00000540338 TSPOP30536 169 aa8.34□□□□□ -1.07
CLIP1-213ENST00000540338 VAMP3Q15836 100 aa8.34□□□□□ -1.07
CLIP1-213ENST00000540338 KIR2DL5AQ8N109 375 aa8.34□□□□□ -1.07
CLIP1-213ENST00000540338 SMKR1H3BMG3 65 aa8.34□□□□□ -1.07
CLIP1-213ENST00000540338 LCNL1Q6ZST4 164 aa8.34□□□□□ -1.07
CLIP1-213ENST00000540338 DYNLRB2Q8TF09 96 aa8.34□□□□□ -1.07
CLIP1-213ENST00000540338 ST20Q9HBF5 79 aa8.34□□□□□ -1.07
CLIP1-213ENST00000540338 IGHG2P01859 326 aa8.34□□□□□ -1.08
CLIP1-213ENST00000540338 MRPL51Q4U2R6 128 aaKnown RBP8.34□□□□□ -1.08
CLIP1-213ENST00000540338 NUDT3O95989 172 aa8.33□□□□□ -1.08
CLIP1-213ENST00000540338 EVI2AP22794 236 aa8.33□□□□□ -1.08
CLIP1-213ENST00000540338 C12orf54Q6X4T0 127 aa8.33□□□□□ -1.08
CLIP1-213ENST00000540338 A0A087X0K7 114 aa8.33□□□□□ -1.08
CLIP1-213ENST00000540338 PRAC2D3DTV9 90 aa8.33□□□□□ -1.08
CLIP1-213ENST00000540338 LEPP41159 167 aa8.33□□□□□ -1.08
CLIP1-213ENST00000540338 DEFB112Q30KQ8 113 aa8.33□□□□□ -1.08
CLIP1-213ENST00000540338 EREGO14944 169 aa8.33□□□□□ -1.08
CLIP1-213ENST00000540338 TCTAP57738 103 aa8.33□□□□□ -1.08
CLIP1-213ENST00000540338 TDRG1Q3Y452 100 aa8.33□□□□□ -1.08
CLIP1-213ENST00000540338 RNF224P0DH78 156 aa8.32□□□□□ -1.08
CLIP1-213ENST00000540338 NMUP48645 174 aa8.32□□□□□ -1.08
CLIP1-213ENST00000540338 LURAP1LQ8IV03 231 aa8.32□□□□□ -1.08
CLIP1-213ENST00000540338 IFI27L1Q96BM0 104 aa8.32□□□□□ -1.08
CLIP1-213ENST00000540338 A6NDX4 124 aa8.32□□□□□ -1.08
CLIP1-213ENST00000540338 IGHV4-59P01825 116 aa8.32□□□□□ -1.08
CLIP1-213ENST00000540338 HTN1P15515 57 aa8.32□□□□□ -1.08
CLIP1-213ENST00000540338 C16orf54Q6UWD8 224 aa8.32□□□□□ -1.08
CLIP1-213ENST00000540338 MRPL52Q86TS9 123 aaKnown RBP8.32□□□□□ -1.08
CLIP1-213ENST00000540338 SNHG12Q9BXW3 62 aa8.32□□□□□ -1.08
CLIP1-213ENST00000540338 SYT8Q8NBV8 401 aa8.32□□□□□ -1.08
CLIP1-213ENST00000540338 ZFAND3Q9H8U3 227 aa8.32□□□□□ -1.08
CLIP1-213ENST00000540338 TMEM97Q5BJF2 176 aa8.32□□□□□ -1.08
CLIP1-213ENST00000540338 IGHV7-4-1A0A0J9YVY3 117 aa8.31□□□□□ -1.08
CLIP1-213ENST00000540338 MRPS12O15235 138 aaKnown RBP8.31□□□□□ -1.08
CLIP1-213ENST00000540338 ATP5LO75964 103 aa8.31□□□□□ -1.08
CLIP1-213ENST00000540338 IGLC3P0DOY3 106 aa8.31□□□□□ -1.08
CLIP1-213ENST00000540338 DMRTA1Q5VZB9 504 aa8.31□□□□□ -1.08
CLIP1-213ENST00000540338 SMAD7O15105 426 aaKnown RBP8.31□□□□□ -1.08
CLIP1-213ENST00000540338 PPP1R17O96001 155 aa8.31□□□□□ -1.08
CLIP1-213ENST00000540338 MS4A6AQ9H2W1 248 aa8.31□□□□□ -1.08
CLIP1-213ENST00000540338 SIGLEC8Q9NYZ4 499 aa8.31□□□□□ -1.08
CLIP1-213ENST00000540338 SMAD5-AS1Q9Y6J3 95 aa8.31□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms