RNA–Protein interactions for RNA: ENST00000540021.5

MSH6-210, Transcript of mutS homolog 6, humanhuman

TSL 2 BASIC

Gene MSH6, Length 3,930 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-210ENST00000540021 APOBEC3AP31941 199 aaPredicted RBP10.26□□□□□ -0.77
MSH6-210ENST00000540021 VGLL1Q99990 258 aa10.26□□□□□ -0.77
MSH6-210ENST00000540021 VKORC1Q9BQB6 163 aa10.26□□□□□ -0.77
MSH6-210ENST00000540021 PRSS22Q9GZN4 317 aa10.26□□□□□ -0.77
MSH6-210ENST00000540021 K7EM74 188 aa10.25□□□□□ -0.77
MSH6-210ENST00000540021 CLEC19AQ6UXS0 136 aa10.25□□□□□ -0.77
MSH6-210ENST00000540021 A0A1W2PPM0 123 aa10.25□□□□□ -0.77
MSH6-210ENST00000540021 NDUFS7O75251 213 aa10.25□□□□□ -0.77
MSH6-210ENST00000540021 ETDBQ3ZM63 59 aa10.25□□□□□ -0.77
MSH6-210ENST00000540021 CYSLTR1Q9Y271 337 aa10.25□□□□□ -0.77
MSH6-210ENST00000540021 TMEM8BA6NDV4 472 aa10.25□□□□□ -0.77
MSH6-210ENST00000540021 ZNF491Q8N8L2 437 aa10.25□□□□□ -0.77
MSH6-210ENST00000540021 LINC00527Q9UJ94 153 aa10.25□□□□□ -0.77
MSH6-210ENST00000540021 BOD1L1Q8NFC6 3051 aa10.24□□□□□ -0.77
MSH6-210ENST00000540021 IGHV3OR16-10A0A075B7F0 116 aa10.24□□□□□ -0.77
MSH6-210ENST00000540021 SPRY2O43597 315 aa10.24□□□□□ -0.77
MSH6-210ENST00000540021 TNFRSF6BO95407 300 aa10.24□□□□□ -0.77
MSH6-210ENST00000540021 SCGB3A1Q96QR1 104 aa10.24□□□□□ -0.77
MSH6-210ENST00000540021 EGR2P11161 476 aaPredicted RBP10.24□□□□□ -0.77
MSH6-210ENST00000540021 DLX6P56179 175 aa10.24□□□□□ -0.77
MSH6-210ENST00000540021 LGALS9BQ3B8N2 356 aa10.24□□□□□ -0.77
MSH6-210ENST00000540021 LGALS9CQ6DKI2 356 aa10.24□□□□□ -0.77
MSH6-210ENST00000540021 GLMPQ8WWB7 406 aa10.24□□□□□ -0.77
MSH6-210ENST00000540021 NXT2Q9NPJ8 142 aaKnown RBP10.24□□□□□ -0.77
MSH6-210ENST00000540021 PSMB2P49721 201 aa10.24□□□□□ -0.77
MSH6-210ENST00000540021 SIGMAR1Q99720 223 aa10.24□□□□□ -0.77
MSH6-210ENST00000540021 PHLDA3Q9Y5J5 127 aa10.24□□□□□ -0.77
MSH6-210ENST00000540021 TMEM238C9JI98 176 aa10.23□□□□□ -0.77
MSH6-210ENST00000540021 ATP5LO75964 103 aa10.23□□□□□ -0.77
MSH6-210ENST00000540021 SIGLEC15Q6ZMC9 328 aa10.23□□□□□ -0.77
MSH6-210ENST00000540021 JMJD8Q96S16 334 aa10.23□□□□□ -0.77
MSH6-210ENST00000540021 B9A039 149 aa10.23□□□□□ -0.77
MSH6-210ENST00000540021 E7EQL1 145 aa10.23□□□□□ -0.77
MSH6-210ENST00000540021 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP10.23□□□□□ -0.77
MSH6-210ENST00000540021 PRR25Q96S07 402 aa10.23□□□□□ -0.77
MSH6-210ENST00000540021 TEX48A0A1B0GUV7 120 aa10.23□□□□□ -0.77
MSH6-210ENST00000540021 FOXC1Q12948 553 aa10.23□□□□□ -0.77
MSH6-210ENST00000540021 EMP1P54849 157 aa10.22□□□□□ -0.77
MSH6-210ENST00000540021 NDPQ00604 133 aa10.22□□□□□ -0.77
MSH6-210ENST00000540021 NUP37Q8NFH4 326 aa10.22□□□□□ -0.77
MSH6-210ENST00000540021 UBTD1Q9HAC8 227 aa10.22□□□□□ -0.77
MSH6-210ENST00000540021 H3BMG7 143 aa10.22□□□□□ -0.77
MSH6-210ENST00000540021 H3BRN7 92 aa10.22□□□□□ -0.77
MSH6-210ENST00000540021 HTN1P15515 57 aa10.22□□□□□ -0.77
MSH6-210ENST00000540021 FXYD2P54710 66 aa10.22□□□□□ -0.77
MSH6-210ENST00000540021 CCDC144NLQ6NUI1 221 aa10.22□□□□□ -0.77
MSH6-210ENST00000540021 TSSC4Q9Y5U2 329 aaPredicted RBP10.22□□□□□ -0.77
MSH6-210ENST00000540021 MGAQ8IWI9 3026 aa10.22□□□□□ -0.77
MSH6-210ENST00000540021 EFNA4P52798 201 aa10.22□□□□□ -0.77
MSH6-210ENST00000540021 METTL26Q96S19 204 aa10.22□□□□□ -0.77
MSH6-210ENST00000540021 RAXQ9Y2V3 346 aa10.22□□□□□ -0.77
MSH6-210ENST00000540021 NPIPB6E9PJ23 425 aa10.21□□□□□ -0.77
MSH6-210ENST00000540021 MRPL35Q9NZE8 188 aaKnown RBP10.21□□□□□ -0.77
MSH6-210ENST00000540021 TMEM14CQ9P0S9 112 aa10.21□□□□□ -0.77
MSH6-210ENST00000540021 PPBPP02775 128 aa10.21□□□□□ -0.78
MSH6-210ENST00000540021 C15orf32Q32M92 178 aa10.21□□□□□ -0.78
MSH6-210ENST00000540021 WFDC12Q8WWY7 111 aa10.21□□□□□ -0.78
MSH6-210ENST00000540021 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa10.21□□□□□ -0.78
MSH6-210ENST00000540021 IL17RELQ6ZVW7 336 aa10.21□□□□□ -0.78
MSH6-210ENST00000540021 LYPD1Q8N2G4 141 aa10.21□□□□□ -0.78
MSH6-210ENST00000540021 CRXO43186 299 aaPredicted RBP10.2□□□□□ -0.78
MSH6-210ENST00000540021 MYCNOSP40205 109 aa10.2□□□□□ -0.78
MSH6-210ENST00000540021 ZNF672Q499Z4 452 aaPredicted RBP10.2□□□□□ -0.78
MSH6-210ENST00000540021 GAGE13Q4V321 117 aa10.2□□□□□ -0.78
MSH6-210ENST00000540021 FAM74A4Q5TZK3 123 aa10.2□□□□□ -0.78
MSH6-210ENST00000540021 LINC00311Q8N616 119 aa10.2□□□□□ -0.78
MSH6-210ENST00000540021 CCL21O00585 134 aa10.2□□□□□ -0.78
MSH6-210ENST00000540021 C5orf64Q2M2E5 130 aa10.2□□□□□ -0.78
MSH6-210ENST00000540021 SH2D6Q7Z4S9 175 aa10.2□□□□□ -0.78
MSH6-210ENST00000540021 I3L2K1 104 aa10.2□□□□□ -0.78
MSH6-210ENST00000540021 K7EIM0 57 aa10.2□□□□□ -0.78
MSH6-210ENST00000540021 CD300EQ496F6 205 aaPredicted RBP10.2□□□□□ -0.78
MSH6-210ENST00000540021 C2orf91Q6ZV80 131 aa10.2□□□□□ -0.78
MSH6-210ENST00000540021 C7orf69Q9H7B7 122 aa10.2□□□□□ -0.78
MSH6-210ENST00000540021 FOXE3Q13461 319 aa10.19□□□□□ -0.78
MSH6-210ENST00000540021 PRR30Q53SZ7 412 aaPredicted RBP10.19□□□□□ -0.78
MSH6-210ENST00000540021 TMEM170BQ5T4T1 132 aa10.19□□□□□ -0.78
MSH6-210ENST00000540021 TNFRSF14Q92956 283 aa10.19□□□□□ -0.78
MSH6-210ENST00000540021 TNRC6BQ9UPQ9 1833 aaKnown RBP10.19□□□□□ -0.78
MSH6-210ENST00000540021 CSPG4Q6UVK1 2322 aa10.19□□□□□ -0.78
MSH6-210ENST00000540021 IGKV3-20P01619 116 aa10.19□□□□□ -0.78
MSH6-210ENST00000540021 ANKRD11Q6UB99 2663 aaPredicted RBP10.19□□□□□ -0.78
MSH6-210ENST00000540021 SORL1Q92673 2214 aa10.19□□□□□ -0.78
MSH6-210ENST00000540021 TEX22C9J3V5 150 aa10.19□□□□□ -0.78
MSH6-210ENST00000540021 LAGE3Q14657 143 aa10.19□□□□□ -0.78
MSH6-210ENST00000540021 IGF2RP11717 2491 aa10.18□□□□□ -0.78
MSH6-210ENST00000540021 A0A1B0GV72 72 aa10.18□□□□□ -0.78
MSH6-210ENST00000540021 CRIP1P50238 77 aa10.18□□□□□ -0.78
MSH6-210ENST00000540021 Q6ZS92 163 aa10.18□□□□□ -0.78
MSH6-210ENST00000540021 CRYGCP07315 174 aa10.18□□□□□ -0.78
MSH6-210ENST00000540021 AZU1P20160 251 aa10.18□□□□□ -0.78
MSH6-210ENST00000540021 BOD1L2Q8IYS8 172 aa10.18□□□□□ -0.78
MSH6-210ENST00000540021 BEX4Q9NWD9 120 aaPredicted RBP10.18□□□□□ -0.78
MSH6-210ENST00000540021 TNRC18O15417 2968 aaPredicted RBP10.18□□□□□ -0.78
MSH6-210ENST00000540021 ZNF815PA8K554 130 aa10.18□□□□□ -0.78
MSH6-210ENST00000540021 DTX2Q86UW9 622 aa10.18□□□□□ -0.78
MSH6-210ENST00000540021 NPFFR1Q9GZQ6 430 aa10.17□□□□□ -0.78
MSH6-210ENST00000540021 TRBV25-1A0A075B6N4 114 aa10.17□□□□□ -0.78
MSH6-210ENST00000540021 TMEM238LA0A1B0GVL6 79 aa10.17□□□□□ -0.78
MSH6-210ENST00000540021 A6NJY4 79 aa10.17□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms