RNA–Protein interactions for RNA: ENST00000538654.5

SNHG1-209, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 2

Gene SNHG1, Length 2,768 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-209ENST00000538654 SHANK2-AS3Q9BTD1 123 aa7.1□□□□□ -1.27
SNHG1-209ENST00000538654 PROCRQ9UNN8 238 aa7.1□□□□□ -1.27
SNHG1-209ENST00000538654 H3BMG7 143 aa7.09□□□□□ -1.27
SNHG1-209ENST00000538654 LEPP41159 167 aa7.09□□□□□ -1.27
SNHG1-209ENST00000538654 FXYD7P58549 80 aa7.09□□□□□ -1.27
SNHG1-209ENST00000538654 RPL32P62910 135 aaKnown RBP7.09□□□□□ -1.27
SNHG1-209ENST00000538654 C12orf74Q32Q52 190 aa7.09□□□□□ -1.27
SNHG1-209ENST00000538654 ARPC1AQ92747 370 aa7.09□□□□□ -1.27
SNHG1-209ENST00000538654 AAMDCQ9H7C9 122 aa7.09□□□□□ -1.27
SNHG1-209ENST00000538654 NAV3Q8IVL0 2385 aa7.09□□□□□ -1.27
SNHG1-209ENST00000538654 PDE6HQ13956 83 aa7.09□□□□□ -1.27
SNHG1-209ENST00000538654 RUSC1-AS1Q66K80 236 aa7.09□□□□□ -1.27
SNHG1-209ENST00000538654 LCNL1Q6ZST4 164 aa7.09□□□□□ -1.27
SNHG1-209ENST00000538654 COX8CQ7Z4L0 72 aa7.09□□□□□ -1.27
SNHG1-209ENST00000538654 C9orf106Q8NAJ2 232 aa7.09□□□□□ -1.27
SNHG1-209ENST00000538654 C18orf15Q96N68 181 aa7.09□□□□□ -1.27
SNHG1-209ENST00000538654 PLA2G2DQ9UNK4 145 aa7.09□□□□□ -1.27
SNHG1-209ENST00000538654 CYSLTR1Q9Y271 337 aa7.09□□□□□ -1.27
SNHG1-209ENST00000538654 LINC01619G3V211 115 aa7.08□□□□□ -1.28
SNHG1-209ENST00000538654 SH2D1AO60880 128 aa7.08□□□□□ -1.28
SNHG1-209ENST00000538654 RRN3P1Q2M238 152 aa7.08□□□□□ -1.28
SNHG1-209ENST00000538654 SH2D6Q7Z4S9 175 aa7.08□□□□□ -1.28
SNHG1-209ENST00000538654 ZNF418Q8TF45 676 aaPredicted RBP7.08□□□□□ -1.28
SNHG1-209ENST00000538654 CFAP54Q96N23 3096 aa7.08□□□□□ -1.28
SNHG1-209ENST00000538654 SPTBN5Q9NRC6 3674 aaKnown RBP7.08□□□□□ -1.28
SNHG1-209ENST00000538654 PATE3B3GLJ2 98 aa7.08□□□□□ -1.28
SNHG1-209ENST00000538654 H3BRN7 92 aa7.08□□□□□ -1.28
SNHG1-209ENST00000538654 M0R1B8 84 aa7.08□□□□□ -1.28
SNHG1-209ENST00000538654 ZC2HC1BQ5TFG8 222 aa7.08□□□□□ -1.28
SNHG1-209ENST00000538654 Q8N1Y9 231 aa7.08□□□□□ -1.28
SNHG1-209ENST00000538654 TMEM133Q9H2Q1 129 aa7.08□□□□□ -1.28
SNHG1-209ENST00000538654 MYO15AQ9UKN7 3530 aa7.08□□□□□ -1.28
SNHG1-209ENST00000538654 APOMO95445 188 aa7.08□□□□□ -1.28
SNHG1-209ENST00000538654 IGHV1-46P01743 117 aa7.08□□□□□ -1.28
SNHG1-209ENST00000538654 RBP4P02753 201 aa7.08□□□□□ -1.28
SNHG1-209ENST00000538654 KLRD1Q13241 179 aa7.08□□□□□ -1.28
SNHG1-209ENST00000538654 MRGPRG-AS1Q2M3A8 158 aa7.08□□□□□ -1.28
SNHG1-209ENST00000538654 Q71RC1 249 aaPredicted RBP7.08□□□□□ -1.28
SNHG1-209ENST00000538654 GTSCR1Q86UQ5 136 aa7.08□□□□□ -1.28
SNHG1-209ENST00000538654 C8orf49Q96NF6 230 aa7.08□□□□□ -1.28
SNHG1-209ENST00000538654 HIST1H4GQ99525 98 aa7.08□□□□□ -1.28
SNHG1-209ENST00000538654 TPSG1Q9NRR2 321 aa7.08□□□□□ -1.28
SNHG1-209ENST00000538654 PRO0461Q9UI25 63 aa7.08□□□□□ -1.28
SNHG1-209ENST00000538654 TMSB15BA0A087X1C1 80 aa7.07□□□□□ -1.28
SNHG1-209ENST00000538654 IGHV3-21A0A0B4J1V1 117 aa7.07□□□□□ -1.28
SNHG1-209ENST00000538654 A0A1B0GWB2 263 aa7.07□□□□□ -1.28
SNHG1-209ENST00000538654 NCBP2LA6PVI3 153 aaKnown RBP7.07□□□□□ -1.28
SNHG1-209ENST00000538654 TMEM105Q8N8V8 129 aa7.07□□□□□ -1.28
SNHG1-209ENST00000538654 FOXC2Q99958 501 aa7.07□□□□□ -1.28
SNHG1-209ENST00000538654 C1QTNF4Q9BXJ3 329 aa7.07□□□□□ -1.28
SNHG1-209ENST00000538654 MED13Q9UHV7 2174 aa7.07□□□□□ -1.28
SNHG1-209ENST00000538654 TMEM8BA6NDV4 472 aa7.07□□□□□ -1.28
SNHG1-209ENST00000538654 SMKR1H3BMG3 65 aa7.07□□□□□ -1.28
SNHG1-209ENST00000538654 CCL3L1P16619 93 aa7.07□□□□□ -1.28
SNHG1-209ENST00000538654 ZNF415Q09FC8 603 aa7.07□□□□□ -1.28
SNHG1-209ENST00000538654 TMEM200BQ69YZ2 307 aa7.07□□□□□ -1.28
SNHG1-209ENST00000538654 PLNP26678 52 aa7.06□□□□□ -1.28
SNHG1-209ENST00000538654 FOXI1Q12951 378 aa7.06□□□□□ -1.28
SNHG1-209ENST00000538654 SPAARA0A1B0GVQ0 90 aa7.06□□□□□ -1.28
SNHG1-209ENST00000538654 I3L2K1 104 aa7.06□□□□□ -1.28
SNHG1-209ENST00000538654 IGLC6P0CF74 106 aa7.06□□□□□ -1.28
SNHG1-209ENST00000538654 Q8N8P6 123 aa7.06□□□□□ -1.28
SNHG1-209ENST00000538654 MYOZ3Q8TDC0 251 aa7.06□□□□□ -1.28
SNHG1-209ENST00000538654 C17orf77Q96MU5 243 aa7.06□□□□□ -1.28
SNHG1-209ENST00000538654 CNFNQ9BYD5 112 aa7.06□□□□□ -1.28
SNHG1-209ENST00000538654 TTTY13Q9BZ97 58 aa7.06□□□□□ -1.28
SNHG1-209ENST00000538654 UFC1Q9Y3C8 167 aa7.06□□□□□ -1.28
SNHG1-209ENST00000538654 CACNA1GO43497 2377 aa7.05□□□□□ -1.28
SNHG1-209ENST00000538654 OR11H12B2RN74 326 aa7.05□□□□□ -1.28
SNHG1-209ENST00000538654 SPINK8P0C7L1 97 aa7.05□□□□□ -1.28
SNHG1-209ENST00000538654 WT1P19544 449 aaPredicted RBP7.05□□□□□ -1.28
SNHG1-209ENST00000538654 DIAPH2-AS1Q14236 149 aa7.05□□□□□ -1.28
SNHG1-209ENST00000538654 LINC00528Q8N1L1 170 aa7.05□□□□□ -1.28
SNHG1-209ENST00000538654 OR11H1Q8NG94 326 aa7.05□□□□□ -1.28
SNHG1-209ENST00000538654 OR11H2Q8NH07 326 aa7.05□□□□□ -1.28
SNHG1-209ENST00000538654 SIGLEC9Q9Y336 463 aa7.05□□□□□ -1.28
SNHG1-209ENST00000538654 MRPS12O15235 138 aaKnown RBP7.05□□□□□ -1.28
SNHG1-209ENST00000538654 IGKV1-17P01599 117 aa7.05□□□□□ -1.28
SNHG1-209ENST00000538654 LYRM7Q5U5X0 104 aa7.05□□□□□ -1.28
SNHG1-209ENST00000538654 TMEM158Q8WZ71 300 aa7.05□□□□□ -1.28
SNHG1-209ENST00000538654 RPEQ96AT9 228 aa7.05□□□□□ -1.28
SNHG1-209ENST00000538654 RNF185Q96GF1 192 aa7.05□□□□□ -1.28
SNHG1-209ENST00000538654 CEP290O15078 2479 aa7.04□□□□□ -1.28
SNHG1-209ENST00000538654 HOXA3O43365 443 aaPredicted RBP7.04□□□□□ -1.28
SNHG1-209ENST00000538654 ATP5G2Q06055 141 aa7.04□□□□□ -1.28
SNHG1-209ENST00000538654 AMTNQ6UX39 209 aa7.04□□□□□ -1.28
SNHG1-209ENST00000538654 PPP1R27Q86WC6 154 aa7.04□□□□□ -1.28
SNHG1-209ENST00000538654 DLX4Q92988 240 aaPredicted RBP7.04□□□□□ -1.28
SNHG1-209ENST00000538654 PRR25Q96S07 402 aa7.04□□□□□ -1.28
SNHG1-209ENST00000538654 A0A087WX48 190 aa7.04□□□□□ -1.28
SNHG1-209ENST00000538654 TRAV40A0A0B4J280 105 aa7.04□□□□□ -1.28
SNHG1-209ENST00000538654 M0R3E3 92 aa7.04□□□□□ -1.28
SNHG1-209ENST00000538654 NDUFB3O43676 98 aa7.04□□□□□ -1.28
SNHG1-209ENST00000538654 IL4P05112 153 aa7.04□□□□□ -1.28
SNHG1-209ENST00000538654 EGR2P11161 476 aaPredicted RBP7.04□□□□□ -1.28
SNHG1-209ENST00000538654 SYT8Q8NBV8 401 aa7.04□□□□□ -1.28
SNHG1-209ENST00000538654 U3KQE9 123 aa7.04□□□□□ -1.28
SNHG1-209ENST00000538654 TRBV7-3A0A075B6L6 115 aa7.03□□□□□ -1.28
SNHG1-209ENST00000538654 C16orf97H3BN30 126 aa7.03□□□□□ -1.28
SNHG1-209ENST00000538654 APELAP0DMC3 54 aa7.03□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms