RNA–Protein interactions for RNA: ENST00000536710.1

PRKDC-208, Transcript of protein kinase, DNA-activated, catalytic subunit, humanhuman

TSL 4

Gene PRKDC, Length 554 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDC-208ENST00000536710 UBR3Q6ZT12 1888 aa1.64□□□□□ -2.15
PRKDC-208ENST00000536710 LAMB2P55268 1798 aa1.64□□□□□ -2.15
PRKDC-208ENST00000536710 CPSF1Q10570 1443 aaKnown RBP1.64□□□□□ -2.15
PRKDC-208ENST00000536710 C5P01031 1676 aa1.64□□□□□ -2.15
PRKDC-208ENST00000536710 ZNF831Q5JPB2 1677 aa1.64□□□□□ -2.15
PRKDC-208ENST00000536710 RP1P56715 2156 aa1.64□□□□□ -2.15
PRKDC-208ENST00000536710 HEATR5BQ9P2D3 2071 aa1.63□□□□□ -2.15
PRKDC-208ENST00000536710 PCNTO95613 3336 aa1.63□□□□□ -2.15
PRKDC-208ENST00000536710 TRGC2P03986 189 aa1.63□□□□□ -2.15
PRKDC-208ENST00000536710 CD2P06729 351 aa1.63□□□□□ -2.15
PRKDC-208ENST00000536710 CXCL1P09341 107 aa1.63□□□□□ -2.15
PRKDC-208ENST00000536710 S100A5P33763 92 aa1.63□□□□□ -2.15
PRKDC-208ENST00000536710 ROMO1P60602 79 aa1.63□□□□□ -2.15
PRKDC-208ENST00000536710 C3orf33Q6P1S2 294 aa1.63□□□□□ -2.15
PRKDC-208ENST00000536710 CROCCP2Q86T23 111 aa1.63□□□□□ -2.15
PRKDC-208ENST00000536710 TP53RKQ96S44 253 aa1.63□□□□□ -2.15
PRKDC-208ENST00000536710 GPX7Q96SL4 187 aaPredicted RBP1.63□□□□□ -2.15
PRKDC-208ENST00000536710 TAS2R7Q9NYW3 318 aa1.63□□□□□ -2.15
PRKDC-208ENST00000536710 C22orf24Q9Y442 160 aa1.63□□□□□ -2.15
PRKDC-208ENST00000536710 DOCK3Q8IZD9 2030 aa1.62□□□□□ -2.15
PRKDC-208ENST00000536710 ODAMA1E959 279 aa1.62□□□□□ -2.15
PRKDC-208ENST00000536710 DNAL4O96015 105 aa1.62□□□□□ -2.15
PRKDC-208ENST00000536710 ARPP19P56211 112 aa1.62□□□□□ -2.15
PRKDC-208ENST00000536710 MPV17LQ2QL34 196 aa1.62□□□□□ -2.15
PRKDC-208ENST00000536710 GRINAQ7Z429 371 aa1.62□□□□□ -2.15
PRKDC-208ENST00000536710 DEFB132Q7Z7B7 95 aa1.62□□□□□ -2.15
PRKDC-208ENST00000536710 BIN3Q9NQY0 253 aa1.62□□□□□ -2.15
PRKDC-208ENST00000536710 CHCHD2Q9Y6H1 151 aaPredicted RBP1.62□□□□□ -2.15
PRKDC-208ENST00000536710 OVOS2A0A0J9YW53 1432 aa1.62□□□□□ -2.15
PRKDC-208ENST00000536710 OVOS2Q6IE36 1432 aa1.62□□□□□ -2.15
PRKDC-208ENST00000536710 PPIP5K1Q6PFW1 1433 aa1.62□□□□□ -2.15
PRKDC-208ENST00000536710 C4AP0C0L4 1744 aa1.62□□□□□ -2.15
PRKDC-208ENST00000536710 C4BP0C0L5 1744 aa1.62□□□□□ -2.15
PRKDC-208ENST00000536710 MICAL3Q7RTP6 2002 aa1.62□□□□□ -2.15
PRKDC-208ENST00000536710 ARFGEF1Q9Y6D6 1849 aa1.61□□□□□ -2.15
PRKDC-208ENST00000536710 OVOS2A0A0G2JMS6 1433 aa1.61□□□□□ -2.15
PRKDC-208ENST00000536710 PRRC2BQ5JSZ5 2229 aaKnown RBP1.61□□□□□ -2.15
PRKDC-208ENST00000536710 TRAV10A0A0B4J240 114 aa1.61□□□□□ -2.15
PRKDC-208ENST00000536710 TLCD2A6NGC4 264 aa1.61□□□□□ -2.15
PRKDC-208ENST00000536710 C17orf112F2Z3M2 114 aa1.61□□□□□ -2.15
PRKDC-208ENST00000536710 M0R233 179 aa1.61□□□□□ -2.15
PRKDC-208ENST00000536710 CCL16O15467 120 aa1.61□□□□□ -2.15
PRKDC-208ENST00000536710 OR10J4P0C629 311 aa1.61□□□□□ -2.15
PRKDC-208ENST00000536710 ZNF25P17030 456 aaPredicted RBP1.61□□□□□ -2.15
PRKDC-208ENST00000536710 SERPINB1P30740 379 aa1.61□□□□□ -2.15
PRKDC-208ENST00000536710 GLRXP35754 106 aa1.61□□□□□ -2.15
PRKDC-208ENST00000536710 CRYBA4P53673 196 aa1.61□□□□□ -2.15
PRKDC-208ENST00000536710 GDF5OSQ5U4N7 250 aa1.61□□□□□ -2.15
PRKDC-208ENST00000536710 FAM24BQ8N5W8 94 aa1.61□□□□□ -2.15
PRKDC-208ENST00000536710 OR5D16Q8NGK9 328 aa1.61□□□□□ -2.15
PRKDC-208ENST00000536710 CHCHD1Q96BP2 118 aaKnown RBP1.61□□□□□ -2.15
PRKDC-208ENST00000536710 SIPA1L3O60292 1781 aaPredicted RBP1.61□□□□□ -2.15
PRKDC-208ENST00000536710 UBR2Q8IWV8 1755 aa1.61□□□□□ -2.15
PRKDC-208ENST00000536710 SCN11AQ9UI33 1791 aa1.61□□□□□ -2.15
PRKDC-208ENST00000536710 DLEC1Q9Y238 1755 aa1.61□□□□□ -2.15
PRKDC-208ENST00000536710 ARFGEF3Q5TH69 2177 aa1.61□□□□□ -2.15
PRKDC-208ENST00000536710 INTS1Q8N201 2190 aaKnown RBP1.61□□□□□ -2.15
PRKDC-208ENST00000536710 SBF1O95248 1867 aa1.6□□□□□ -2.15
PRKDC-208ENST00000536710 TJP1Q07157 1748 aa1.6□□□□□ -2.15
PRKDC-208ENST00000536710 NRXN2Q9P2S2 1712 aa1.6□□□□□ -2.15
PRKDC-208ENST00000536710 EDC4Q6P2E9 1401 aaKnown RBP1.6□□□□□ -2.15
PRKDC-208ENST00000536710 M0R2N4 97 aa1.6□□□□□ -2.15
PRKDC-208ENST00000536710 INE1O15225 51 aa1.6□□□□□ -2.15
PRKDC-208ENST00000536710 CSN2P05814 226 aa1.6□□□□□ -2.15
PRKDC-208ENST00000536710 CDK6Q00534 326 aa1.6□□□□□ -2.15
PRKDC-208ENST00000536710 MSMO1Q15800 293 aa1.6□□□□□ -2.15
PRKDC-208ENST00000536710 DYDC1Q8WWB3 177 aa1.6□□□□□ -2.15
PRKDC-208ENST00000536710 POP5Q969H6 163 aaKnown RBP1.6□□□□□ -2.15
PRKDC-208ENST00000536710 LINC00526Q96FQ7 95 aa1.6□□□□□ -2.15
PRKDC-208ENST00000536710 MED11Q9P086 117 aa1.6□□□□□ -2.15
PRKDC-208ENST00000536710 N4BP2Q86UW6 1770 aaPredicted RBP1.59□□□□□ -2.15
PRKDC-208ENST00000536710 ARFGEF2Q9Y6D5 1785 aa1.59□□□□□ -2.15
PRKDC-208ENST00000536710 AFDNP55196 1824 aaKnown RBP1.59□□□□□ -2.15
PRKDC-208ENST00000536710 B4DSR2 109 aa1.59□□□□□ -2.15
PRKDC-208ENST00000536710 K7ERJ3 54 aa1.59□□□□□ -2.15
PRKDC-208ENST00000536710 PIAS1O75925 651 aa1.59□□□□□ -2.15
PRKDC-208ENST00000536710 IFNA4P05014 189 aa1.59□□□□□ -2.15
PRKDC-208ENST00000536710 IDO1P14902 403 aa1.59□□□□□ -2.15
PRKDC-208ENST00000536710 DSCR4P56555 118 aaPredicted RBP1.59□□□□□ -2.15
PRKDC-208ENST00000536710 PATE2Q6UY27 113 aa1.59□□□□□ -2.15
PRKDC-208ENST00000536710 PATE1Q8WXA2 126 aa1.59□□□□□ -2.15
PRKDC-208ENST00000536710 RAB37Q96AX2 223 aa1.59□□□□□ -2.15
PRKDC-208ENST00000536710 MAP1LC3BQ9GZQ8 125 aa1.59□□□□□ -2.15
PRKDC-208ENST00000536710 BOLA2Q9H3K6 86 aa1.59□□□□□ -2.15
PRKDC-208ENST00000536710 CACYBPQ9HB71 228 aaKnown RBP1.59□□□□□ -2.15
PRKDC-208ENST00000536710 ORMDL1Q9P0S3 153 aa1.59□□□□□ -2.15
PRKDC-208ENST00000536710 ALPK2Q86TB3 2170 aa1.59□□□□□ -2.16
PRKDC-208ENST00000536710 BCORQ6W2J9 1755 aa1.59□□□□□ -2.16
PRKDC-208ENST00000536710 ANKRD31Q8N7Z5 1873 aa1.58□□□□□ -2.16
PRKDC-208ENST00000536710 SMG6Q86US8 1419 aaKnown RBP1.58□□□□□ -2.16
PRKDC-208ENST00000536710 SCN7AQ01118 1682 aa1.58□□□□□ -2.16
PRKDC-208ENST00000536710 TNRC6CQ9HCJ0 1690 aaKnown RBP1.58□□□□□ -2.16
PRKDC-208ENST00000536710 TIAM2Q8IVF5 1701 aa1.58□□□□□ -2.16
PRKDC-208ENST00000536710 TNRC18O15417 2968 aaPredicted RBP1.58□□□□□ -2.16
PRKDC-208ENST00000536710 E7EUB6 86 aa1.58□□□□□ -2.16
PRKDC-208ENST00000536710 ERC2-IT1O76042 136 aa1.58□□□□□ -2.16
PRKDC-208ENST00000536710 RAB5CP51148 216 aa1.58□□□□□ -2.16
PRKDC-208ENST00000536710 KLRD1Q13241 179 aa1.58□□□□□ -2.16
PRKDC-208ENST00000536710 LTC4SQ16873 150 aa1.58□□□□□ -2.16
PRKDC-208ENST00000536710 DEFB115Q30KQ5 88 aa1.58□□□□□ -2.16
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms