RNA–Protein interactions for RNA: ENST00000535896.6

SYNE1-233, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5

Gene SYNE1, Length 1,388 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-233ENST00000535896 C22orf34Q6ZV56 151 aa4.97□□□□□ -1.61
SYNE1-233ENST00000535896 GTF2H5Q6ZYL4 71 aa4.97□□□□□ -1.61
SYNE1-233ENST00000535896 SMIM15Q7Z3B0 74 aa4.97□□□□□ -1.61
SYNE1-233ENST00000535896 BOD1L2Q8IYS8 172 aa4.97□□□□□ -1.61
SYNE1-233ENST00000535896 KRTAP4-5Q9BYR2 181 aa4.97□□□□□ -1.61
SYNE1-233ENST00000535896 RABAC1Q9UI14 185 aa4.97□□□□□ -1.61
SYNE1-233ENST00000535896 NBPF19A0A087WUL8 3843 aa4.97□□□□□ -1.61
SYNE1-233ENST00000535896 IGLV11-55A0A075B6I3 123 aa4.96□□□□□ -1.62
SYNE1-233ENST00000535896 A0A087X0K7 114 aa4.96□□□□□ -1.62
SYNE1-233ENST00000535896 TRAV8-1A0A0A6YYK1 113 aa4.96□□□□□ -1.62
SYNE1-233ENST00000535896 PPIAL4CA0A0B4J2A2 164 aa4.96□□□□□ -1.62
SYNE1-233ENST00000535896 MUC21A0A0G2JKD1 596 aa4.96□□□□□ -1.62
SYNE1-233ENST00000535896 MUC21A0A140T8X8 626 aa4.96□□□□□ -1.62
SYNE1-233ENST00000535896 hDV102S1A0JD36 115 aa4.96□□□□□ -1.62
SYNE1-233ENST00000535896 A1L4Q6 167 aa4.96□□□□□ -1.62
SYNE1-233ENST00000535896 TMEM189A5PLL7 270 aa4.96□□□□□ -1.62
SYNE1-233ENST00000535896 E7EQL1 145 aa4.96□□□□□ -1.62
SYNE1-233ENST00000535896 H3BRM9 83 aa4.96□□□□□ -1.62
SYNE1-233ENST00000535896 GNG7O60262 68 aa4.96□□□□□ -1.62
SYNE1-233ENST00000535896 IGHV3-48P01763 117 aa4.96□□□□□ -1.62
SYNE1-233ENST00000535896 IL4P05112 153 aa4.96□□□□□ -1.62
SYNE1-233ENST00000535896 CD3EP07766 207 aa4.96□□□□□ -1.62
SYNE1-233ENST00000535896 PPIAL4GP0DN37 164 aa4.96□□□□□ -1.62
SYNE1-233ENST00000535896 FGF6P10767 208 aa4.96□□□□□ -1.62
SYNE1-233ENST00000535896 COX6B1P14854 86 aa4.96□□□□□ -1.62
SYNE1-233ENST00000535896 PAX8Q06710 450 aa4.96□□□□□ -1.62
SYNE1-233ENST00000535896 TMEM97Q5BJF2 176 aa4.96□□□□□ -1.62
SYNE1-233ENST00000535896 MUC21Q5SSG8 566 aa4.96□□□□□ -1.62
SYNE1-233ENST00000535896 C1orf122Q6ZSJ8 110 aa4.96□□□□□ -1.62
SYNE1-233ENST00000535896 C2orf91Q6ZV80 131 aa4.96□□□□□ -1.62
SYNE1-233ENST00000535896 EXOC3-AS1Q8N2X6 119 aa4.96□□□□□ -1.62
SYNE1-233ENST00000535896 RNASE8Q8TDE3 154 aaKnown RBP4.96□□□□□ -1.62
SYNE1-233ENST00000535896 RITA1Q96K30 269 aa4.96□□□□□ -1.62
SYNE1-233ENST00000535896 PRELID3AQ96N28 172 aa4.96□□□□□ -1.62
SYNE1-233ENST00000535896 ATP6V0BQ99437 205 aa4.96□□□□□ -1.62
SYNE1-233ENST00000535896 FBXL15Q9H469 300 aa4.96□□□□□ -1.62
SYNE1-233ENST00000535896 NXT2Q9NPJ8 142 aaKnown RBP4.96□□□□□ -1.62
SYNE1-233ENST00000535896 HIGD1BQ9P298 99 aa4.96□□□□□ -1.62
SYNE1-233ENST00000535896 DPM3Q9P2X0 92 aa4.96□□□□□ -1.62
SYNE1-233ENST00000535896 SMPXQ9UHP9 88 aa4.96□□□□□ -1.62
SYNE1-233ENST00000535896 SPG11Q96JI7 2443 aa4.96□□□□□ -1.62
SYNE1-233ENST00000535896 PLXNB1O43157 2135 aa4.96□□□□□ -1.62
SYNE1-233ENST00000535896 SETXQ7Z333 2677 aaKnown RBP4.95□□□□□ -1.62
SYNE1-233ENST00000535896 NAV2Q8IVL1 2488 aa4.95□□□□□ -1.62
SYNE1-233ENST00000535896 ROS1P08922 2347 aa4.95□□□□□ -1.62
SYNE1-233ENST00000535896 A0A096LNJ9 63 aa4.95□□□□□ -1.62
SYNE1-233ENST00000535896 C7orf71A4D174 169 aa4.95□□□□□ -1.62
SYNE1-233ENST00000535896 ZNF785A8K8V0 405 aa4.95□□□□□ -1.62
SYNE1-233ENST00000535896 ODF3BA8MYP8 253 aa4.95□□□□□ -1.62
SYNE1-233ENST00000535896 C19orf84I3L1E1 186 aa4.95□□□□□ -1.62
SYNE1-233ENST00000535896 M0QZ24 198 aa4.95□□□□□ -1.62
SYNE1-233ENST00000535896 CNIH1O95406 144 aa4.95□□□□□ -1.62
SYNE1-233ENST00000535896 IGLC6P0CF74 106 aa4.95□□□□□ -1.62
SYNE1-233ENST00000535896 KIR3DS1Q14943 382 aa4.95□□□□□ -1.62
SYNE1-233ENST00000535896 KRTAP19-4Q3LI73 84 aa4.95□□□□□ -1.62
SYNE1-233ENST00000535896 MINOS1Q5TGZ0 78 aa4.95□□□□□ -1.62
SYNE1-233ENST00000535896 RUSC1-AS1Q66K80 236 aa4.95□□□□□ -1.62
SYNE1-233ENST00000535896 CRYBG3Q68DQ2 2970 aa4.95□□□□□ -1.62
SYNE1-233ENST00000535896 ZNF562Q6V9R5 426 aa4.95□□□□□ -1.62
SYNE1-233ENST00000535896 LINC00173Q6ZV60 143 aa4.95□□□□□ -1.62
SYNE1-233ENST00000535896 TTC9CQ8N5M4 171 aa4.95□□□□□ -1.62
SYNE1-233ENST00000535896 OR5A1Q8NGJ0 315 aa4.95□□□□□ -1.62
SYNE1-233ENST00000535896 CFHR4Q92496 578 aa4.95□□□□□ -1.62
SYNE1-233ENST00000535896 MRPL53Q96EL3 112 aaKnown RBP4.95□□□□□ -1.62
SYNE1-233ENST00000535896 SGK494Q96LW2 274 aa4.95□□□□□ -1.62
SYNE1-233ENST00000535896 AP1S3Q96PC3 154 aa4.95□□□□□ -1.62
SYNE1-233ENST00000535896 FANCD2OSQ96PS1 177 aa4.95□□□□□ -1.62
SYNE1-233ENST00000535896 CST9LQ9H4G1 147 aa4.95□□□□□ -1.62
SYNE1-233ENST00000535896 HIF1ANQ9NWT6 349 aa4.95□□□□□ -1.62
SYNE1-233ENST00000535896 SIGLEC8Q9NYZ4 499 aa4.95□□□□□ -1.62
SYNE1-233ENST00000535896 MINOS1-NBL1R4GNA1 71 aa4.95□□□□□ -1.62
SYNE1-233ENST00000535896 ITPR2Q14571 2701 aa4.95□□□□□ -1.62
SYNE1-233ENST00000535896 TACC2O95359 2948 aa4.95□□□□□ -1.62
SYNE1-233ENST00000535896 CELSR2Q9HCU4 2923 aa4.94□□□□□ -1.62
SYNE1-233ENST00000535896 IGHV3-72A0A0B4J1Y9 119 aa4.94□□□□□ -1.62
SYNE1-233ENST00000535896 C9orf118A6NHY6 69 aa4.94□□□□□ -1.62
SYNE1-233ENST00000535896 D6R8Y8 96 aa4.94□□□□□ -1.62
SYNE1-233ENST00000535896 SH2D1AO60880 128 aa4.94□□□□□ -1.62
SYNE1-233ENST00000535896 SMIM17P0DL12 118 aa4.94□□□□□ -1.62
SYNE1-233ENST00000535896 CNTFRP26992 372 aa4.94□□□□□ -1.62
SYNE1-233ENST00000535896 CRIP1P50238 77 aa4.94□□□□□ -1.62
SYNE1-233ENST00000535896 EBI3Q14213 229 aa4.94□□□□□ -1.62
SYNE1-233ENST00000535896 C5orf64Q2M2E5 130 aa4.94□□□□□ -1.62
SYNE1-233ENST00000535896 OCIAD2Q56VL3 154 aa4.94□□□□□ -1.62
SYNE1-233ENST00000535896 UFSP1Q6NVU6 142 aa4.94□□□□□ -1.62
SYNE1-233ENST00000535896 FER1L6-AS1Q8NA97 138 aa4.94□□□□□ -1.62
SYNE1-233ENST00000535896 ARPC1AQ92747 370 aa4.94□□□□□ -1.62
SYNE1-233ENST00000535896 IFI27L1Q96BM0 104 aa4.94□□□□□ -1.62
SYNE1-233ENST00000535896 TIMD4Q96H15 378 aa4.94□□□□□ -1.62
SYNE1-233ENST00000535896 PRR25Q96S07 402 aa4.94□□□□□ -1.62
SYNE1-233ENST00000535896 SLC50A1Q9BRV3 221 aa4.94□□□□□ -1.62
SYNE1-233ENST00000535896 MAP1LC3AQ9H492 121 aa4.94□□□□□ -1.62
SYNE1-233ENST00000535896 C21orf62Q9NYP8 219 aa4.94□□□□□ -1.62
SYNE1-233ENST00000535896 DCHS2Q6V1P9 2916 aa4.94□□□□□ -1.62
SYNE1-233ENST00000535896 POLQO75417 2590 aa4.94□□□□□ -1.62
SYNE1-233ENST00000535896 APCP25054 2843 aa4.93□□□□□ -1.62
SYNE1-233ENST00000535896 GAGE12BA1L429 117 aa4.93□□□□□ -1.62
SYNE1-233ENST00000535896 OR2T8A6NH00 312 aa4.93□□□□□ -1.62
SYNE1-233ENST00000535896 K7EMI3 77 aa4.93□□□□□ -1.62
SYNE1-233ENST00000535896 TIMM23O14925 209 aa4.93□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms