RNA–Protein interactions for RNA: ENST00000533523.5

CHMP4A-207, Transcript of charged multivesicular body protein 4A, humanhuman

TSL 1 (best)

Gene CHMP4A, Length 1,266 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4A-207ENST00000533523 TMEM167BQ9NRX6 74 aa11.32□□□□□ -0.6
CHMP4A-207ENST00000533523 DNAH5Q8TE73 4624 aa11.31□□□□□ -0.6
CHMP4A-207ENST00000533523 PRSS29PA6NIE9 313 aa11.31□□□□□ -0.6
CHMP4A-207ENST00000533523 ISLRO14498 428 aa11.31□□□□□ -0.6
CHMP4A-207ENST00000533523 SNRPCP09234 159 aaKnown RBP11.31□□□□□ -0.6
CHMP4A-207ENST00000533523 P0DMU3 169 aa11.31□□□□□ -0.6
CHMP4A-207ENST00000533523 FAM231AP0DMU4 169 aa11.31□□□□□ -0.6
CHMP4A-207ENST00000533523 FAM231CP0DMU5 169 aa11.31□□□□□ -0.6
CHMP4A-207ENST00000533523 IGLC2P0DOY2 106 aa11.31□□□□□ -0.6
CHMP4A-207ENST00000533523 HIST1H1EP10412 219 aaKnown RBP11.31□□□□□ -0.6
CHMP4A-207ENST00000533523 NUTF2P61970 127 aaKnown RBP11.31□□□□□ -0.6
CHMP4A-207ENST00000533523 C12orf74Q32Q52 190 aa11.31□□□□□ -0.6
CHMP4A-207ENST00000533523 POM121L12Q8N7R1 296 aa11.31□□□□□ -0.6
CHMP4A-207ENST00000533523 SUN5Q8TC36 379 aa11.31□□□□□ -0.6
CHMP4A-207ENST00000533523 NDUFAF3Q9BU61 184 aa11.31□□□□□ -0.6
CHMP4A-207ENST00000533523 GNG13Q9P2W3 67 aa11.31□□□□□ -0.6
CHMP4A-207ENST00000533523 H3BQ15 152 aa11.3□□□□□ -0.6
CHMP4A-207ENST00000533523 H3BTX0 84 aa11.3□□□□□ -0.6
CHMP4A-207ENST00000533523 SOCS3O14543 225 aa11.3□□□□□ -0.6
CHMP4A-207ENST00000533523 NBEAP1P0C6P0 100 aa11.3□□□□□ -0.6
CHMP4A-207ENST00000533523 MED14OSP0DP75 135 aa11.3□□□□□ -0.6
CHMP4A-207ENST00000533523 HLA-DRB4P13762 266 aa11.3□□□□□ -0.6
CHMP4A-207ENST00000533523 PPT1P50897 306 aa11.3□□□□□ -0.6
CHMP4A-207ENST00000533523 CSNK1G2-AS1Q8NCQ2 148 aa11.3□□□□□ -0.6
CHMP4A-207ENST00000533523 BLNKQ8WV28 456 aa11.3□□□□□ -0.6
CHMP4A-207ENST00000533523 LINC00052Q96N35 136 aa11.3□□□□□ -0.6
CHMP4A-207ENST00000533523 ZNF586Q9NXT0 402 aa11.3□□□□□ -0.6
CHMP4A-207ENST00000533523 HLA-DRB4X5D2U9 266 aa11.3□□□□□ -0.6
CHMP4A-207ENST00000533523 NACAE9PAV3 2078 aa11.3□□□□□ -0.6
CHMP4A-207ENST00000533523 A0A087X0K7 114 aa11.29□□□□□ -0.6
CHMP4A-207ENST00000533523 RTL8CO15255 209 aa11.29□□□□□ -0.6
CHMP4A-207ENST00000533523 IFNA1P01562 189 aa11.29□□□□□ -0.6
CHMP4A-207ENST00000533523 UBE2G2P60604 165 aa11.29□□□□□ -0.6
CHMP4A-207ENST00000533523 FOXI2Q6ZQN5 318 aa11.29□□□□□ -0.6
CHMP4A-207ENST00000533523 C16orf92Q96LL3 132 aa11.29□□□□□ -0.6
CHMP4A-207ENST00000533523 C17orf77Q96MU5 243 aa11.29□□□□□ -0.6
CHMP4A-207ENST00000533523 C1QTNF4Q9BXJ3 329 aa11.29□□□□□ -0.6
CHMP4A-207ENST00000533523 MANBALQ9NQG1 85 aa11.29□□□□□ -0.6
CHMP4A-207ENST00000533523 XCL2Q9UBD3 114 aa11.29□□□□□ -0.6
CHMP4A-207ENST00000533523 TRBV19A0A075B6N1 114 aa11.28□□□□□ -0.6
CHMP4A-207ENST00000533523 LINC00862A6NCI5 91 aa11.28□□□□□ -0.6
CHMP4A-207ENST00000533523 H3BMM0 161 aa11.28□□□□□ -0.6
CHMP4A-207ENST00000533523 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa11.28□□□□□ -0.6
CHMP4A-207ENST00000533523 UBE2DNLQ8IWF7 75 aa11.28□□□□□ -0.6
CHMP4A-207ENST00000533523 SLC17A3O00476 420 aa11.27□□□□□ -0.61
CHMP4A-207ENST00000533523 PAGE4O60829 102 aa11.27□□□□□ -0.61
CHMP4A-207ENST00000533523 BCL2P10415 239 aa11.27□□□□□ -0.61
CHMP4A-207ENST00000533523 GUK1Q16774 197 aa11.27□□□□□ -0.61
CHMP4A-207ENST00000533523 EBLN2Q6P2I7 272 aa11.27□□□□□ -0.61
CHMP4A-207ENST00000533523 FAM210AQ96ND0 272 aa11.27□□□□□ -0.61
CHMP4A-207ENST00000533523 SAV1Q9H4B6 383 aaPredicted RBP11.27□□□□□ -0.61
CHMP4A-207ENST00000533523 MED9Q9NWA0 146 aa11.27□□□□□ -0.61
CHMP4A-207ENST00000533523 YTHDF2Q9Y5A9 579 aaKnown RBP11.27□□□□□ -0.61
CHMP4A-207ENST00000533523 LOC102723971A0A1B0GUV8 181 aa11.26□□□□□ -0.61
CHMP4A-207ENST00000533523 RBFOX3A6NFN3 312 aa11.26□□□□□ -0.61
CHMP4A-207ENST00000533523 FAM74A7A6NL05 159 aa11.26□□□□□ -0.61
CHMP4A-207ENST00000533523 NDUFB4O95168 129 aa11.26□□□□□ -0.61
CHMP4A-207ENST00000533523 EMP1P54849 157 aa11.26□□□□□ -0.61
CHMP4A-207ENST00000533523 PDE6HQ13956 83 aa11.26□□□□□ -0.61
CHMP4A-207ENST00000533523 TOR2AQ5JU69 321 aa11.26□□□□□ -0.61
CHMP4A-207ENST00000533523 CST9LP1Q5W188 147 aa11.26□□□□□ -0.61
CHMP4A-207ENST00000533523 COMMD7Q86VX2 200 aa11.26□□□□□ -0.61
CHMP4A-207ENST00000533523 CLUHP3Q96NS8 147 aa11.26□□□□□ -0.61
CHMP4A-207ENST00000533523 ARL2-SNX15V9GYD0 113 aa11.26□□□□□ -0.61
CHMP4A-207ENST00000533523 IGLV2-18A0A075B6J9 118 aa11.25□□□□□ -0.61
CHMP4A-207ENST00000533523 A0A1W2PRE2 83 aa11.25□□□□□ -0.61
CHMP4A-207ENST00000533523 ZNF253O75346 499 aa11.25□□□□□ -0.61
CHMP4A-207ENST00000533523 TAGLN2P37802 199 aaKnown RBP11.25□□□□□ -0.61
CHMP4A-207ENST00000533523 RANP62826 216 aaKnown RBP11.25□□□□□ -0.61
CHMP4A-207ENST00000533523 ICAM4Q14773 271 aa11.25□□□□□ -0.61
CHMP4A-207ENST00000533523 ZNF506Q5JVG8 444 aa11.25□□□□□ -0.61
CHMP4A-207ENST00000533523 Q9H3A6 140 aa11.25□□□□□ -0.61
CHMP4A-207ENST00000533523 VAX2Q9UIW0 290 aa11.25□□□□□ -0.61
CHMP4A-207ENST00000533523 RAB19A4D1S5 217 aa11.24□□□□□ -0.61
CHMP4A-207ENST00000533523 GGTLC3B5MD39 225 aa11.24□□□□□ -0.61
CHMP4A-207ENST00000533523 ATP5G3P48201 142 aa11.24□□□□□ -0.61
CHMP4A-207ENST00000533523 PSG9Q00887 426 aa11.24□□□□□ -0.61
CHMP4A-207ENST00000533523 RXFP4Q8TDU9 374 aa11.24□□□□□ -0.61
CHMP4A-207ENST00000533523 SLC50A1Q9BRV3 221 aa11.24□□□□□ -0.61
CHMP4A-207ENST00000533523 EIF5A2Q9GZV4 153 aaKnown RBP11.24□□□□□ -0.61
CHMP4A-207ENST00000533523 ZNF331Q9NQX6 463 aaPredicted RBP11.24□□□□□ -0.61
CHMP4A-207ENST00000533523 OTORQ9NRC9 128 aa11.24□□□□□ -0.61
CHMP4A-207ENST00000533523 IGHV3OR16-12A0A075B7B8 117 aa11.23□□□□□ -0.61
CHMP4A-207ENST00000533523 IGKV3-20P01619 116 aa11.23□□□□□ -0.61
CHMP4A-207ENST00000533523 FXYD7P58549 80 aa11.23□□□□□ -0.61
CHMP4A-207ENST00000533523 LGALS9BQ3B8N2 356 aa11.23□□□□□ -0.61
CHMP4A-207ENST00000533523 GDF5OSQ5U4N7 250 aa11.23□□□□□ -0.61
CHMP4A-207ENST00000533523 LYPD1Q8N2G4 141 aa11.23□□□□□ -0.61
CHMP4A-207ENST00000533523 EXOC3-AS1Q8N2X6 119 aa11.23□□□□□ -0.61
CHMP4A-207ENST00000533523 OR4B1Q8NGF8 309 aa11.23□□□□□ -0.61
CHMP4A-207ENST00000533523 TRAV8-2A0A0B4J237 113 aa11.22□□□□□ -0.61
CHMP4A-207ENST00000533523 A0A0J9YX75 114 aa11.22□□□□□ -0.61
CHMP4A-207ENST00000533523 PGPA6NDG6 321 aa11.22□□□□□ -0.61
CHMP4A-207ENST00000533523 DUSP14O95147 198 aaKnown RBP11.22□□□□□ -0.61
CHMP4A-207ENST00000533523 SPART-AS1P0CW21 52 aa11.22□□□□□ -0.61
CHMP4A-207ENST00000533523 SUMO1P63165 101 aaKnown RBP11.22□□□□□ -0.61
CHMP4A-207ENST00000533523 SRSF3P84103 164 aaKnown RBP11.22□□□□□ -0.61
CHMP4A-207ENST00000533523 MEF2BQ02080 365 aaPredicted RBP11.22□□□□□ -0.61
CHMP4A-207ENST00000533523 PEA15Q15121 130 aa11.22□□□□□ -0.61
CHMP4A-207ENST00000533523 IGFL4Q6B9Z1 124 aa11.22□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 72.5 ms