RNA–Protein interactions for RNA: ENST00000531118.5

CD44-232, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 877 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-232ENST00000531118 PRRT1Q99946 306 aa5.36□□□□□ -1.55
CD44-232ENST00000531118 C1orf43Q9BWL3 253 aa5.36□□□□□ -1.55
CD44-232ENST00000531118 MIXL1Q9H2W2 232 aa5.36□□□□□ -1.55
CD44-232ENST00000531118 SCP2D1Q9UJQ7 156 aa5.36□□□□□ -1.55
CD44-232ENST00000531118 HHLA3Q9XRX5 114 aa5.36□□□□□ -1.55
CD44-232ENST00000531118 KLF12Q9Y4X4 402 aa5.36□□□□□ -1.55
CD44-232ENST00000531118 U3KQ87 197 aa5.36□□□□□ -1.55
CD44-232ENST00000531118 PIGBOS1A0A0B4J2F0 54 aa5.35□□□□□ -1.55
CD44-232ENST00000531118 TEX13DA0A0J9YY54 714 aaPredicted RBP5.35□□□□□ -1.55
CD44-232ENST00000531118 RPL7P18124 248 aaKnown RBP5.35□□□□□ -1.55
CD44-232ENST00000531118 ORM2P19652 201 aa5.35□□□□□ -1.55
CD44-232ENST00000531118 S100A7P31151 101 aa5.35□□□□□ -1.55
CD44-232ENST00000531118 LEPP41159 167 aa5.35□□□□□ -1.55
CD44-232ENST00000531118 GGNBP1Q5YKI7 109 aa5.35□□□□□ -1.55
CD44-232ENST00000531118 LHFPL1Q86WI0 220 aa5.35□□□□□ -1.55
CD44-232ENST00000531118 BPIFCQ8NFQ6 507 aa5.35□□□□□ -1.55
CD44-232ENST00000531118 BLNKQ8WV28 456 aa5.35□□□□□ -1.55
CD44-232ENST00000531118 ODF3Q96PU9 254 aa5.35□□□□□ -1.55
CD44-232ENST00000531118 TXNDC17Q9BRA2 123 aa5.35□□□□□ -1.55
CD44-232ENST00000531118 SHANK2-AS3Q9BTD1 123 aa5.35□□□□□ -1.55
CD44-232ENST00000531118 TM2D2Q9BX73 214 aa5.35□□□□□ -1.55
CD44-232ENST00000531118 SLIRPQ9GZT3 109 aaKnown RBP5.35□□□□□ -1.55
CD44-232ENST00000531118 TMEM222Q9H0R3 208 aa5.35□□□□□ -1.55
CD44-232ENST00000531118 KCNIP3Q9Y2W7 256 aa5.35□□□□□ -1.55
CD44-232ENST00000531118 TRGV4A0A0C4DH28 118 aa5.34□□□□□ -1.55
CD44-232ENST00000531118 RBFOX3A6NFN3 312 aa5.34□□□□□ -1.55
CD44-232ENST00000531118 PRAC2D3DTV9 90 aa5.34□□□□□ -1.55
CD44-232ENST00000531118 CDS2O95674 445 aa5.34□□□□□ -1.55
CD44-232ENST00000531118 IGHV3-30P01768 117 aa5.34□□□□□ -1.55
CD44-232ENST00000531118 IGHV3-33P01772 117 aa5.34□□□□□ -1.55
CD44-232ENST00000531118 ORM1P02763 201 aa5.34□□□□□ -1.55
CD44-232ENST00000531118 IGHV3-30-3P0DP02 117 aa5.34□□□□□ -1.55
CD44-232ENST00000531118 IGHV3-30-5P0DP03 117 aa5.34□□□□□ -1.55
CD44-232ENST00000531118 CXCL2P19875 107 aa5.34□□□□□ -1.55
CD44-232ENST00000531118 TNFSF8P32971 234 aa5.34□□□□□ -1.55
CD44-232ENST00000531118 PPT1P50897 306 aa5.34□□□□□ -1.55
CD44-232ENST00000531118 TIRAPP58753 221 aa5.34□□□□□ -1.55
CD44-232ENST00000531118 ZNF846Q147U1 533 aa5.34□□□□□ -1.55
CD44-232ENST00000531118 ANXA2RQ3ZCQ2 193 aa5.34□□□□□ -1.55
CD44-232ENST00000531118 SPANXN2Q5MJ10 180 aa5.34□□□□□ -1.55
CD44-232ENST00000531118 IBA57Q5T440 356 aaKnown RBP5.34□□□□□ -1.55
CD44-232ENST00000531118 C9orf47Q6ZRZ4 202 aa5.34□□□□□ -1.55
CD44-232ENST00000531118 EIF4E3Q8N5X7 224 aaKnown RBP5.34□□□□□ -1.55
CD44-232ENST00000531118 OR13C8Q8NGS7 320 aa5.34□□□□□ -1.55
CD44-232ENST00000531118 OR1S1Q8NH92 325 aa5.34□□□□□ -1.55
CD44-232ENST00000531118 LRRC20Q8TCA0 184 aa5.34□□□□□ -1.55
CD44-232ENST00000531118 MARCH1Q8TCQ1 289 aa5.34□□□□□ -1.55
CD44-232ENST00000531118 MRPL32Q9BYC8 188 aaKnown RBP5.34□□□□□ -1.55
CD44-232ENST00000531118 MCUBQ9NWR8 336 aa5.34□□□□□ -1.55
CD44-232ENST00000531118 CACFD1Q9UGQ2 172 aa5.34□□□□□ -1.55
CD44-232ENST00000531118 ANKRD20A5PA0PJZ0 165 aa5.33□□□□□ -1.56
CD44-232ENST00000531118 C7orf71A4D174 169 aa5.33□□□□□ -1.56
CD44-232ENST00000531118 SFTA3P0C7M3 94 aa5.33□□□□□ -1.56
CD44-232ENST00000531118 SULT1A3P0DMM9 295 aa5.33□□□□□ -1.56
CD44-232ENST00000531118 SULT1A4P0DMN0 295 aa5.33□□□□□ -1.56
CD44-232ENST00000531118 ANXA3P12429 323 aa5.33□□□□□ -1.56
CD44-232ENST00000531118 INPP1P49441 399 aa5.33□□□□□ -1.56
CD44-232ENST00000531118 PYDC2Q56P42 97 aa5.33□□□□□ -1.56
CD44-232ENST00000531118 TMEM268Q5VZI3 342 aa5.33□□□□□ -1.56
CD44-232ENST00000531118 LCN15Q6UWW0 184 aa5.33□□□□□ -1.56
CD44-232ENST00000531118 TMEM182Q6ZP80 229 aaPredicted RBP5.33□□□□□ -1.56
CD44-232ENST00000531118 SELENOHQ8IZQ5 122 aaKnown RBP5.33□□□□□ -1.56
CD44-232ENST00000531118 TOMM5Q8N4H5 51 aa5.33□□□□□ -1.56
CD44-232ENST00000531118 OR4D10Q8NGI6 311 aa5.33□□□□□ -1.56
CD44-232ENST00000531118 ZNF431Q8TF32 576 aaPredicted RBP5.33□□□□□ -1.56
CD44-232ENST00000531118 DEDD2Q8WXF8 326 aa5.33□□□□□ -1.56
CD44-232ENST00000531118 SLC50A1Q9BRV3 221 aa5.33□□□□□ -1.56
CD44-232ENST00000531118 RBKSQ9H477 322 aa5.33□□□□□ -1.56
CD44-232ENST00000531118 ZNF331Q9NQX6 463 aaPredicted RBP5.33□□□□□ -1.56
CD44-232ENST00000531118 NDUFA13Q9P0J0 144 aa5.33□□□□□ -1.56
CD44-232ENST00000531118 HSPB7Q9UBY9 170 aa5.33□□□□□ -1.56
CD44-232ENST00000531118 RPH3ALQ9UNE2 315 aa5.33□□□□□ -1.56
CD44-232ENST00000531118 HIGD1AQ9Y241 93 aa5.33□□□□□ -1.56
CD44-232ENST00000531118 TRGV11A0A075B6L2 103 aa5.32□□□□□ -1.56
CD44-232ENST00000531118 LOC100131303A0A0U1RQF7 123 aa5.32□□□□□ -1.56
CD44-232ENST00000531118 C9JCJ5 164 aa5.32□□□□□ -1.56
CD44-232ENST00000531118 SLC17A3O00476 420 aa5.32□□□□□ -1.56
CD44-232ENST00000531118 MRPS12O15235 138 aaKnown RBP5.32□□□□□ -1.56
CD44-232ENST00000531118 SLPIP03973 132 aa5.32□□□□□ -1.56
CD44-232ENST00000531118 CT45A10P0DMU9 189 aa5.32□□□□□ -1.56
CD44-232ENST00000531118 SRPXP78539 464 aa5.32□□□□□ -1.56
CD44-232ENST00000531118 OR51S1Q8NGJ8 323 aa5.32□□□□□ -1.56
CD44-232ENST00000531118 GLYATL2Q8WU03 294 aa5.32□□□□□ -1.56
CD44-232ENST00000531118 ZNF479Q96JC4 524 aa5.32□□□□□ -1.56
CD44-232ENST00000531118 PAXXQ9BUH6 204 aa5.32□□□□□ -1.56
CD44-232ENST00000531118 KRTAP4-11Q9BYQ6 195 aa5.32□□□□□ -1.56
CD44-232ENST00000531118 SLC25A31Q9H0C2 315 aa5.32□□□□□ -1.56
CD44-232ENST00000531118 NAA60Q9H7X0 242 aa5.32□□□□□ -1.56
CD44-232ENST00000531118 GPR132Q9UNW8 380 aa5.32□□□□□ -1.56
CD44-232ENST00000531118 TRAV8-6A0A0B4J262 113 aa5.31□□□□□ -1.56
CD44-232ENST00000531118 CRYM-AS1A6NIL9 109 aa5.31□□□□□ -1.56
CD44-232ENST00000531118 PRSS46E5RG02 174 aa5.31□□□□□ -1.56
CD44-232ENST00000531118 SLC25A5P05141 298 aaKnown RBP5.31□□□□□ -1.56
CD44-232ENST00000531118 AKR1C4P17516 323 aa5.31□□□□□ -1.56
CD44-232ENST00000531118 ATP5IP56385 69 aaPredicted RBP5.31□□□□□ -1.56
CD44-232ENST00000531118 AKR1C1Q04828 323 aa5.31□□□□□ -1.56
CD44-232ENST00000531118 BTN1A1Q13410 526 aa5.31□□□□□ -1.56
CD44-232ENST00000531118 OR10J3Q5JRS4 329 aa5.31□□□□□ -1.56
CD44-232ENST00000531118 FAAP20Q6NZ36 180 aa5.31□□□□□ -1.56
CD44-232ENST00000531118 ZBTB8BQ8NAP8 495 aaPredicted RBP5.31□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms