RNA–Protein interactions for RNA: ENST00000526553.5

CD44-223, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 571 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-223ENST00000526553 HIST2H2BEQ16778 126 aa1.89□□□□□ -2.11
CD44-223ENST00000526553 HIST2H2BFQ5QNW6 126 aaPredicted RBP1.89□□□□□ -2.11
CD44-223ENST00000526553 ZNF705AQ6ZN79 300 aaPredicted RBP1.89□□□□□ -2.11
CD44-223ENST00000526553 GKN2Q86XP6 184 aa1.89□□□□□ -2.11
CD44-223ENST00000526553 GDPD1Q8N9F7 314 aa1.89□□□□□ -2.11
CD44-223ENST00000526553 MAFIPQ8WZ33 124 aa1.89□□□□□ -2.11
CD44-223ENST00000526553 HIST1H2BHQ93079 126 aa1.89□□□□□ -2.11
CD44-223ENST00000526553 ERMAPQ96PL5 475 aaPredicted RBP1.89□□□□□ -2.11
CD44-223ENST00000526553 HIST1H2BNQ99877 126 aa1.89□□□□□ -2.11
CD44-223ENST00000526553 HIST1H2BMQ99879 126 aa1.89□□□□□ -2.11
CD44-223ENST00000526553 TMEM147Q9BVK8 224 aa1.89□□□□□ -2.11
CD44-223ENST00000526553 TCEAL2Q9H3H9 227 aaPredicted RBP1.89□□□□□ -2.11
CD44-223ENST00000526553 CISHQ9NSE2 258 aa1.89□□□□□ -2.11
CD44-223ENST00000526553 SPANXCQ9NY87 97 aa1.89□□□□□ -2.11
CD44-223ENST00000526553 IDI2-AS1Q9NZ38 188 aa1.89□□□□□ -2.11
CD44-223ENST00000526553 PRO2289Q9P1D8 64 aa1.89□□□□□ -2.11
CD44-223ENST00000526553 TPRKBQ9Y3C4 175 aa1.89□□□□□ -2.11
CD44-223ENST00000526553 RBM7Q9Y580 266 aaKnown RBP1.89□□□□□ -2.11
CD44-223ENST00000526553 ARL5AQ9Y689 179 aa1.89□□□□□ -2.11
CD44-223ENST00000526553 NIPBLQ6KC79 2804 aaeCLIP1.88□□□□□ -2.11
CD44-223ENST00000526553 INTS1Q8N201 2190 aaKnown RBP1.88□□□□□ -2.11
CD44-223ENST00000526553 TRAV7A0A075B6U4 112 aa1.88□□□□□ -2.11
CD44-223ENST00000526553 TRAV38-1A0A0B4J264 116 aa1.88□□□□□ -2.11
CD44-223ENST00000526553 SPTY2D1-AS1A0A0U1RR47 76 aa1.88□□□□□ -2.11
CD44-223ENST00000526553 EXOC1LA0A1B0GW35 172 aa1.88□□□□□ -2.11
CD44-223ENST00000526553 hADV38S2A0JD32 116 aa1.88□□□□□ -2.11
CD44-223ENST00000526553 DPRXA6NFQ7 191 aa1.88□□□□□ -2.11
CD44-223ENST00000526553 FABP5P3A8MUU1 101 aa1.88□□□□□ -2.11
CD44-223ENST00000526553 H7C2G1 150 aa1.88□□□□□ -2.11
CD44-223ENST00000526553 PDE6DO43924 150 aa1.88□□□□□ -2.11
CD44-223ENST00000526553 SERPINA1P01009 418 aa1.88□□□□□ -2.11
CD44-223ENST00000526553 IGHV3-7P01780 117 aa1.88□□□□□ -2.11
CD44-223ENST00000526553 CST2P09228 141 aa1.88□□□□□ -2.11
CD44-223ENST00000526553 LGALS1P09382 135 aaKnown RBP1.88□□□□□ -2.11
CD44-223ENST00000526553 SULT1A3P0DMM9 295 aa1.88□□□□□ -2.11
CD44-223ENST00000526553 SULT1A4P0DMN0 295 aa1.88□□□□□ -2.11
CD44-223ENST00000526553 IL7P13232 177 aa1.88□□□□□ -2.11
CD44-223ENST00000526553 OGNP20774 298 aaKnown RBP1.88□□□□□ -2.11
CD44-223ENST00000526553 RPL28P46779 137 aaKnown RBP1.88□□□□□ -2.11
CD44-223ENST00000526553 AKR1D1P51857 326 aa1.88□□□□□ -2.11
CD44-223ENST00000526553 NCALDP61601 193 aa1.88□□□□□ -2.11
CD44-223ENST00000526553 GLO1Q04760 184 aa1.88□□□□□ -2.11
CD44-223ENST00000526553 HMGN3Q15651 99 aa1.88□□□□□ -2.11
CD44-223ENST00000526553 HACD4Q5VWC8 232 aa1.88□□□□□ -2.11
CD44-223ENST00000526553 RPL13AP3Q6NVV1 102 aa1.88□□□□□ -2.11
CD44-223ENST00000526553 Q6ZTI0 123 aa1.88□□□□□ -2.11
CD44-223ENST00000526553 RPP25LQ8N5L8 163 aaKnown RBP1.88□□□□□ -2.11
CD44-223ENST00000526553 LINC00301Q8NCQ3 95 aa1.88□□□□□ -2.11
CD44-223ENST00000526553 OR4X2Q8NGF9 303 aa1.88□□□□□ -2.11
CD44-223ENST00000526553 OR51A2Q8NGJ7 313 aa1.88□□□□□ -2.11
CD44-223ENST00000526553 OR51T1Q8NGJ9 327 aa1.88□□□□□ -2.11
CD44-223ENST00000526553 AP3S1Q92572 193 aa1.88□□□□□ -2.11
CD44-223ENST00000526553 TOMM6Q96B49 74 aa1.88□□□□□ -2.11
CD44-223ENST00000526553 PHB2Q99623 299 aa1.88□□□□□ -2.11
CD44-223ENST00000526553 SIGMAR1Q99720 223 aa1.88□□□□□ -2.11
CD44-223ENST00000526553 CCDC32Q9BV29 185 aa1.88□□□□□ -2.11
CD44-223ENST00000526553 PBDC1Q9BVG4 233 aa1.88□□□□□ -2.11
CD44-223ENST00000526553 TMEM138Q9NPI0 162 aa1.88□□□□□ -2.11
CD44-223ENST00000526553 COPZ2Q9P299 210 aa1.88□□□□□ -2.11
CD44-223ENST00000526553 SCP2D1Q9UJQ7 156 aa1.88□□□□□ -2.11
CD44-223ENST00000526553 ANKHD1Q8IWZ3 2542 aaKnown RBP1.88□□□□□ -2.11
CD44-223ENST00000526553 ABCA4P78363 2273 aa1.88□□□□□ -2.11
CD44-223ENST00000526553 ABCA2Q9BZC7 2435 aa1.88□□□□□ -2.11
CD44-223ENST00000526553 AKAP6Q13023 2319 aa1.88□□□□□ -2.11
CD44-223ENST00000526553 TACC2O95359 2948 aa1.87□□□□□ -2.11
CD44-223ENST00000526553 OTOGQ6ZRI0 2925 aa1.87□□□□□ -2.11
CD44-223ENST00000526553 PDZD2O15018 2839 aa1.87□□□□□ -2.11
CD44-223ENST00000526553 MAP1AP78559 2803 aaPredicted RBP1.87□□□□□ -2.11
CD44-223ENST00000526553 TRAV9-1A0A075B6T8 112 aa1.87□□□□□ -2.11
CD44-223ENST00000526553 FAM236DA0A1B0GTK5 79 aa1.87□□□□□ -2.11
CD44-223ENST00000526553 LOC105371267A0A1B0GV96 52 aa1.87□□□□□ -2.11
CD44-223ENST00000526553 GNG14A0A1W2PPG7 69 aa1.87□□□□□ -2.11
CD44-223ENST00000526553 G3V2T6 193 aa1.87□□□□□ -2.11
CD44-223ENST00000526553 H3BT86 120 aa1.87□□□□□ -2.11
CD44-223ENST00000526553 ORC5O43913 435 aa1.87□□□□□ -2.11
CD44-223ENST00000526553 TFPTP0C1Z6 253 aa1.87□□□□□ -2.11
CD44-223ENST00000526553 SMIM6P0DI80 62 aa1.87□□□□□ -2.11
CD44-223ENST00000526553 FAM236CP0DP71 79 aa1.87□□□□□ -2.11
CD44-223ENST00000526553 COX6B1P14854 86 aa1.87□□□□□ -2.11
CD44-223ENST00000526553 HLA-DMBP28068 263 aa1.87□□□□□ -2.11
CD44-223ENST00000526553 ETV6P41212 452 aa1.87□□□□□ -2.11
CD44-223ENST00000526553 MAGEA12P43365 314 aa1.87□□□□□ -2.11
CD44-223ENST00000526553 SERPINB9P50453 376 aa1.87□□□□□ -2.11
CD44-223ENST00000526553 RPS20P60866 119 aaKnown RBP1.87□□□□□ -2.11
CD44-223ENST00000526553 TMEM258P61165 79 aa1.87□□□□□ -2.11
CD44-223ENST00000526553 RPL19P84098 196 aaKnown RBP1.87□□□□□ -2.11
CD44-223ENST00000526553 SPANXN3Q5MJ09 141 aa1.87□□□□□ -2.11
CD44-223ENST00000526553 AADACL3Q5VUY0 350 aa1.87□□□□□ -2.11
CD44-223ENST00000526553 TEX36Q5VZQ5 186 aa1.87□□□□□ -2.11
CD44-223ENST00000526553 TMEM42Q69YG0 159 aa1.87□□□□□ -2.11
CD44-223ENST00000526553 TAC4Q86UU9 113 aa1.87□□□□□ -2.11
CD44-223ENST00000526553 DHFR2Q86XF0 187 aa1.87□□□□□ -2.11
CD44-223ENST00000526553 C12orf45Q8N5I9 185 aaPredicted RBP1.87□□□□□ -2.11
CD44-223ENST00000526553 ZNF676Q8N7Q3 588 aa1.87□□□□□ -2.11
CD44-223ENST00000526553 OR52L1Q8NGH7 329 aa1.87□□□□□ -2.11
CD44-223ENST00000526553 C1orf54Q8WWF1 131 aa1.87□□□□□ -2.11
CD44-223ENST00000526553 PFDN5Q99471 154 aa1.87□□□□□ -2.11
CD44-223ENST00000526553 S100A13Q99584 98 aa1.87□□□□□ -2.11
CD44-223ENST00000526553 C12orf57Q99622 126 aa1.87□□□□□ -2.11
CD44-223ENST00000526553 DOHHQ9BU89 302 aa1.87□□□□□ -2.11
Retrieved 100 of 20,778 RNA–protein pairs in 65.9 ms