RNA–Protein interactions for RNA: ENST00000525078.1

USP47-204, Transcript of ubiquitin specific peptidase 47, humanhuman

TSL 1 (best)

Gene USP47, Length 978 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP47-204ENST00000525078 FAM208AQ9UK61 1670 aaKnown RBP3.17□□□□□ -1.9
USP47-204ENST00000525078 ARID1AO14497 2285 aa3.17□□□□□ -1.9
USP47-204ENST00000525078 PRR14LQ5THK1 2151 aa3.17□□□□□ -1.9
USP47-204ENST00000525078 DIP2AQ14689 1571 aa3.17□□□□□ -1.9
USP47-204ENST00000525078 SCN8AQ9UQD0 1980 aa3.16□□□□□ -1.9
USP47-204ENST00000525078 LRRC37A3O60309 1634 aa3.16□□□□□ -1.9
USP47-204ENST00000525078 KIF26AQ9ULI4 1882 aaPredicted RBP3.16□□□□□ -1.9
USP47-204ENST00000525078 IGKV1D-42A0A075B6H8 117 aa3.16□□□□□ -1.9
USP47-204ENST00000525078 OR51F1A6NGY5 319 aa3.16□□□□□ -1.9
USP47-204ENST00000525078 BBIP1A8MTZ0 92 aa3.16□□□□□ -1.9
USP47-204ENST00000525078 HIST1H1BP16401 226 aaKnown RBP3.16□□□□□ -1.9
USP47-204ENST00000525078 SNRPD3P62318 126 aaKnown RBP3.16□□□□□ -1.9
USP47-204ENST00000525078 RNASE10Q5GAN6 216 aaKnown RBP3.16□□□□□ -1.9
USP47-204ENST00000525078 TCTEX1D1Q8N7M0 179 aa3.16□□□□□ -1.9
USP47-204ENST00000525078 OR4X2Q8NGF9 303 aa3.16□□□□□ -1.9
USP47-204ENST00000525078 OR10AC1Q8NH08 325 aa3.16□□□□□ -1.9
USP47-204ENST00000525078 NAA38Q9BRA0 125 aaKnown RBP3.16□□□□□ -1.9
USP47-204ENST00000525078 NDUFB11Q9NX14 153 aa3.16□□□□□ -1.9
USP47-204ENST00000525078 TPRKBQ9Y3C4 175 aa3.16□□□□□ -1.9
USP47-204ENST00000525078 ADAMTS9Q9P2N4 1935 aa3.16□□□□□ -1.9
USP47-204ENST00000525078 COL2A1P02458 1487 aaPredicted RBP3.16□□□□□ -1.9
USP47-204ENST00000525078 SLX4Q8IY92 1834 aa3.15□□□□□ -1.91
USP47-204ENST00000525078 CTSDP07339 412 aaPredicted RBP3.15□□□□□ -1.91
USP47-204ENST00000525078 SMIM6P0DI80 62 aa3.15□□□□□ -1.91
USP47-204ENST00000525078 MOBPQ13875 183 aa3.15□□□□□ -1.91
USP47-204ENST00000525078 ZNF181Q2M3W8 571 aa3.15□□□□□ -1.91
USP47-204ENST00000525078 SPANXN5Q5MJ07 72 aa3.15□□□□□ -1.91
USP47-204ENST00000525078 LCE1EQ5T753 118 aa3.15□□□□□ -1.91
USP47-204ENST00000525078 TMEM91Q6ZNR0 172 aa3.15□□□□□ -1.91
USP47-204ENST00000525078 LINC00301Q8NCQ3 95 aa3.15□□□□□ -1.91
USP47-204ENST00000525078 TMEM191AQ9H0A3 160 aa3.15□□□□□ -1.91
USP47-204ENST00000525078 MON2Q7Z3U7 1717 aa3.15□□□□□ -1.91
USP47-204ENST00000525078 XRN1Q8IZH2 1706 aaKnown RBP3.15□□□□□ -1.91
USP47-204ENST00000525078 CD163L1Q9NR16 1453 aa3.15□□□□□ -1.91
USP47-204ENST00000525078 RGPD1P0DJD0 1748 aa3.14□□□□□ -1.91
USP47-204ENST00000525078 NALCNQ8IZF0 1738 aa3.14□□□□□ -1.91
USP47-204ENST00000525078 ERCC6L2Q5T890 1561 aa3.14□□□□□ -1.91
USP47-204ENST00000525078 C17orf112F2Z3M2 114 aa3.14□□□□□ -1.91
USP47-204ENST00000525078 OR1I1O60431 355 aa3.14□□□□□ -1.91
USP47-204ENST00000525078 CTSGP08311 255 aa3.14□□□□□ -1.91
USP47-204ENST00000525078 CSRP1P21291 193 aaKnown RBP3.14□□□□□ -1.91
USP47-204ENST00000525078 ZNF345Q14585 488 aa3.14□□□□□ -1.91
USP47-204ENST00000525078 IZUMO2Q6UXV1 221 aa3.14□□□□□ -1.91
USP47-204ENST00000525078 OR8B3Q8NGG8 313 aa3.14□□□□□ -1.91
USP47-204ENST00000525078 OR5D14Q8NGL3 314 aa3.14□□□□□ -1.91
USP47-204ENST00000525078 OR2T35Q8NGX2 323 aa3.14□□□□□ -1.91
USP47-204ENST00000525078 POP5Q969H6 163 aaKnown RBP3.14□□□□□ -1.91
USP47-204ENST00000525078 FKBP11Q9NYL4 201 aa3.14□□□□□ -1.91
USP47-204ENST00000525078 SCN9AQ15858 1988 aa3.14□□□□□ -1.91
USP47-204ENST00000525078 MYO5AQ9Y4I1 1855 aaKnown RBP3.13□□□□□ -1.91
USP47-204ENST00000525078 AKAP12Q02952 1782 aa3.13□□□□□ -1.91
USP47-204ENST00000525078 CASZ1Q86V15 1759 aa3.13□□□□□ -1.91
USP47-204ENST00000525078 TMSB15BA0A087X1C1 80 aa3.13□□□□□ -1.91
USP47-204ENST00000525078 TRAV1-1A0A0B4J248 108 aa3.13□□□□□ -1.91
USP47-204ENST00000525078 A0A0G2JMM0 328 aa3.13□□□□□ -1.91
USP47-204ENST00000525078 LOC107986453A0A1B0GWG9 222 aa3.13□□□□□ -1.91
USP47-204ENST00000525078 A0A1W2PNM2 257 aa3.13□□□□□ -1.91
USP47-204ENST00000525078 A0A1W2PPB8 328 aa3.13□□□□□ -1.91
USP47-204ENST00000525078 C20orf202A1L168 122 aa3.13□□□□□ -1.91
USP47-204ENST00000525078 C9orf170A2RU37 121 aa3.13□□□□□ -1.91
USP47-204ENST00000525078 A8MU10 97 aa3.13□□□□□ -1.91
USP47-204ENST00000525078 KIR3DP1A8MWS1 328 aa3.13□□□□□ -1.91
USP47-204ENST00000525078 ODF3BA8MYP8 253 aa3.13□□□□□ -1.91
USP47-204ENST00000525078 M0R233 179 aa3.13□□□□□ -1.91
USP47-204ENST00000525078 CDC42EP2O14613 210 aa3.13□□□□□ -1.91
USP47-204ENST00000525078 PROSCO94903 275 aa3.13□□□□□ -1.91
USP47-204ENST00000525078 PEBP1P30086 187 aaKnown RBP3.13□□□□□ -1.91
USP47-204ENST00000525078 PCBD1P61457 104 aa3.13□□□□□ -1.91
USP47-204ENST00000525078 PLGLB1Q02325 96 aa3.13□□□□□ -1.91
USP47-204ENST00000525078 TEN1Q86WV5 123 aa3.13□□□□□ -1.91
USP47-204ENST00000525078 RPS19BP1Q86WX3 136 aaKnown RBP3.13□□□□□ -1.91
USP47-204ENST00000525078 KRTAP11-1Q8IUC1 163 aa3.13□□□□□ -1.91
USP47-204ENST00000525078 Q8IYB0 196 aa3.13□□□□□ -1.91
USP47-204ENST00000525078 OR4C12Q96R67 309 aa3.13□□□□□ -1.91
USP47-204ENST00000525078 C14orf132Q9NPU4 83 aa3.13□□□□□ -1.91
USP47-204ENST00000525078 CCDC167Q9P0B6 97 aa3.13□□□□□ -1.91
USP47-204ENST00000525078 USP54Q70EL1 1684 aa3.13□□□□□ -1.91
USP47-204ENST00000525078 ABCC6O95255 1503 aa3.13□□□□□ -1.91
USP47-204ENST00000525078 FANCMQ8IYD8 2048 aa3.12□□□□□ -1.91
USP47-204ENST00000525078 C3P01024 1663 aa3.12□□□□□ -1.91
USP47-204ENST00000525078 FNDC10F2Z333 226 aa3.12□□□□□ -1.91
USP47-204ENST00000525078 M0R129 80 aa3.12□□□□□ -1.91
USP47-204ENST00000525078 APODP05090 189 aa3.12□□□□□ -1.91
USP47-204ENST00000525078 SAA1P0DJI8 122 aaPredicted RBP3.12□□□□□ -1.91
USP47-204ENST00000525078 BLCAPP62952 87 aa3.12□□□□□ -1.91
USP47-204ENST00000525078 ZNF791Q3KP31 576 aaPredicted RBP3.12□□□□□ -1.91
USP47-204ENST00000525078 CLLU1Q5K131 121 aa3.12□□□□□ -1.91
USP47-204ENST00000525078 LCE1FQ5T754 118 aa3.12□□□□□ -1.91
USP47-204ENST00000525078 SH2D6Q7Z4S9 175 aa3.12□□□□□ -1.91
USP47-204ENST00000525078 ZNF436-AS1Q8NC38 126 aaPredicted RBP3.12□□□□□ -1.91
USP47-204ENST00000525078 CLEC2BQ92478 149 aa3.12□□□□□ -1.91
USP47-204ENST00000525078 C14orf144Q96I85 54 aa3.12□□□□□ -1.91
USP47-204ENST00000525078 SLC50A1Q9BRV3 221 aa3.12□□□□□ -1.91
USP47-204ENST00000525078 PSMG3Q9BT73 122 aaPredicted RBP3.12□□□□□ -1.91
USP47-204ENST00000525078 CXCL16Q9H2A7 254 aa3.12□□□□□ -1.91
USP47-204ENST00000525078 PSORS1C2Q9UIG4 136 aa3.12□□□□□ -1.91
USP47-204ENST00000525078 ANAPC1Q9H1A4 1944 aa3.12□□□□□ -1.91
USP47-204ENST00000525078 DDX60Q8IY21 1712 aaKnown RBP3.12□□□□□ -1.91
USP47-204ENST00000525078 FMN2Q9NZ56 1722 aa3.12□□□□□ -1.91
USP47-204ENST00000525078 KIDINS220Q9ULH0 1771 aa3.12□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms