RNA–Protein interactions for RNA: ENST00000520228.1

SDCBP-208, Transcript of syndecan binding protein, human

TSL 2

Gene SDCBP, Length 564 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SDCBP-208	ENST00000520228	SIX6	O95475	246 aa		4.95	□□□□□ -1.62
SDCBP-208	ENST00000520228	IL15RA	Q13261	267 aa		4.95	□□□□□ -1.62
SDCBP-208	ENST00000520228	APRG1	Q8IVJ8	170 aa		4.95	□□□□□ -1.62
SDCBP-208	ENST00000520228	BPIFC	Q8NFQ6	507 aa		4.95	□□□□□ -1.62
SDCBP-208	ENST00000520228	PPP1R14B	Q96C90	147 aa		4.95	□□□□□ -1.62
SDCBP-208	ENST00000520228	GGACT	Q9BVM4	153 aa		4.95	□□□□□ -1.62
SDCBP-208	ENST00000520228	NPVF	Q9HCQ7	196 aa		4.95	□□□□□ -1.62
SDCBP-208	ENST00000520228	FAM24A	A6NFZ4	105 aa		4.94	□□□□□ -1.62
SDCBP-208	ENST00000520228	CST7	O76096	145 aa		4.94	□□□□□ -1.62
SDCBP-208	ENST00000520228	PTTG1	O95997	202 aa		4.94	□□□□□ -1.62
SDCBP-208	ENST00000520228	RLN2	P04090	185 aa		4.94	□□□□□ -1.62
SDCBP-208	ENST00000520228	ORM2	P19652	201 aa		4.94	□□□□□ -1.62
SDCBP-208	ENST00000520228	S100A7	P31151	101 aa		4.94	□□□□□ -1.62
SDCBP-208	ENST00000520228	APOC4	P55056	127 aa		4.94	□□□□□ -1.62
SDCBP-208	ENST00000520228	DEFB131A	P59861	70 aa		4.94	□□□□□ -1.62
SDCBP-208	ENST00000520228	SELENOT	P62341	195 aa		4.94	□□□□□ -1.62
SDCBP-208	ENST00000520228	SLC38A11	Q08AI6	406 aa		4.94	□□□□□ -1.62
SDCBP-208	ENST00000520228	C1orf194	Q5T5A4	169 aa		4.94	□□□□□ -1.62
SDCBP-208	ENST00000520228		Q6ZR54	194 aa		4.94	□□□□□ -1.62
SDCBP-208	ENST00000520228	CYP2G1P	Q6ZSU1	146 aa		4.94	□□□□□ -1.62
SDCBP-208	ENST00000520228	LINC00518	Q8N0U6	118 aa		4.94	□□□□□ -1.62
SDCBP-208	ENST00000520228	TMEM147	Q9BVK8	224 aa		4.94	□□□□□ -1.62
SDCBP-208	ENST00000520228	NMES1	Q9C002	83 aa		4.94	□□□□□ -1.62
SDCBP-208	ENST00000520228	C11orf1	Q9H5F2	150 aa		4.94	□□□□□ -1.62
SDCBP-208	ENST00000520228	LYRM2	Q9NU23	88 aa	Predicted RBP	4.94	□□□□□ -1.62
SDCBP-208	ENST00000520228	KIR2DL5B	A0A0G2JN68	375 aa		4.93	□□□□□ -1.62
SDCBP-208	ENST00000520228	KIR2DL5B	A0A0G2JPC4	375 aa		4.93	□□□□□ -1.62
SDCBP-208	ENST00000520228	IGSF23	A1L1A6	192 aa		4.93	□□□□□ -1.62
SDCBP-208	ENST00000520228	HYPM	O75409	117 aa		4.93	□□□□□ -1.62
SDCBP-208	ENST00000520228	ZNF688	P0C7X2	276 aa		4.93	□□□□□ -1.62
SDCBP-208	ENST00000520228	LINC00869	P0C866	280 aa		4.93	□□□□□ -1.62
SDCBP-208	ENST00000520228	S100A11	P31949	105 aa		4.93	□□□□□ -1.62
SDCBP-208	ENST00000520228	SULT1A1	P50225	295 aa		4.93	□□□□□ -1.62
SDCBP-208	ENST00000520228	H2BFS	P57053	126 aa		4.93	□□□□□ -1.62
SDCBP-208	ENST00000520228	SNRPD3	P62318	126 aa	Known RBP	4.93	□□□□□ -1.62
SDCBP-208	ENST00000520228	HBG1	P69891	147 aa		4.93	□□□□□ -1.62
SDCBP-208	ENST00000520228	HBG2	P69892	147 aa		4.93	□□□□□ -1.62
SDCBP-208	ENST00000520228	RAB31	Q13636	194 aa		4.93	□□□□□ -1.62
SDCBP-208	ENST00000520228	LINC00242	Q5T6M2	205 aa		4.93	□□□□□ -1.62
SDCBP-208	ENST00000520228	S100A7A	Q86SG5	101 aa		4.93	□□□□□ -1.62
SDCBP-208	ENST00000520228	ZNF546	Q86UE3	836 aa		4.93	□□□□□ -1.62
SDCBP-208	ENST00000520228	STX12	Q86Y82	276 aa		4.93	□□□□□ -1.62
SDCBP-208	ENST00000520228	OR8I2	Q8N0Y5	310 aa		4.93	□□□□□ -1.62
SDCBP-208	ENST00000520228	KIR2DL5A	Q8N109	375 aa		4.93	□□□□□ -1.62
SDCBP-208	ENST00000520228	FAM24B	Q8N5W8	94 aa		4.93	□□□□□ -1.62
SDCBP-208	ENST00000520228	TMEM252	Q8N6L7	170 aa		4.93	□□□□□ -1.62
SDCBP-208	ENST00000520228	KIR2DL5B	Q8NHK3	375 aa		4.93	□□□□□ -1.62
SDCBP-208	ENST00000520228	DCANP1	Q8TF63	244 aa		4.93	□□□□□ -1.62
SDCBP-208	ENST00000520228	RETN	Q9HD89	108 aa		4.93	□□□□□ -1.62
SDCBP-208	ENST00000520228	NRN1	Q9NPD7	142 aa		4.93	□□□□□ -1.62
SDCBP-208	ENST00000520228	UQCC1	Q9NVA1	299 aa		4.93	□□□□□ -1.62
SDCBP-208	ENST00000520228	DOK5	Q9P104	306 aa		4.93	□□□□□ -1.62
SDCBP-208	ENST00000520228	ZNF98	A6NK75	572 aa		4.92	□□□□□ -1.62
SDCBP-208	ENST00000520228	AGPAT2	O15120	278 aa		4.92	□□□□□ -1.62
SDCBP-208	ENST00000520228	OR5G3	P0C626	314 aa		4.92	□□□□□ -1.62
SDCBP-208	ENST00000520228	GALR1	P47211	349 aa		4.92	□□□□□ -1.62
SDCBP-208	ENST00000520228	ATP6V1F	Q16864	119 aa		4.92	□□□□□ -1.62
SDCBP-208	ENST00000520228	PSMG4	Q5JS54	123 aa		4.92	□□□□□ -1.62
SDCBP-208	ENST00000520228	PPP1R1C	Q8WVI7	109 aa		4.92	□□□□□ -1.62
SDCBP-208	ENST00000520228	SLC25A39	Q9BZJ4	359 aa	Predicted RBP	4.92	□□□□□ -1.62
SDCBP-208	ENST00000520228	SLC25A31	Q9H0C2	315 aa		4.92	□□□□□ -1.62
SDCBP-208	ENST00000520228	SLC25A22	Q9H936	323 aa		4.92	□□□□□ -1.62
SDCBP-208	ENST00000520228	OR5AC2	Q9NZP5	309 aa		4.92	□□□□□ -1.62
SDCBP-208	ENST00000520228	HIGD1A	Q9Y241	93 aa		4.92	□□□□□ -1.62
SDCBP-208	ENST00000520228	ALG5	Q9Y673	324 aa		4.92	□□□□□ -1.62
SDCBP-208	ENST00000520228	DNAH9	Q9NYC9	4486 aa		4.92	□□□□□ -1.62
SDCBP-208	ENST00000520228	KNCN	A6PVL3	124 aa		4.91	□□□□□ -1.62
SDCBP-208	ENST00000520228	ATP6V1G1	O75348	118 aa		4.91	□□□□□ -1.62
SDCBP-208	ENST00000520228	PET100	P0DJ07	73 aa		4.91	□□□□□ -1.62
SDCBP-208	ENST00000520228	CAMLG	P49069	296 aa		4.91	□□□□□ -1.62
SDCBP-208	ENST00000520228	PLP1	P60201	277 aa		4.91	□□□□□ -1.62
SDCBP-208	ENST00000520228	EWSR1	Q01844	656 aa	Known RBP eCLIP	4.91	□□□□□ -1.62
SDCBP-208	ENST00000520228	RGS21	Q2M5E4	152 aa		4.91	□□□□□ -1.62
SDCBP-208	ENST00000520228	ACTL10	Q5JWF8	245 aa		4.91	□□□□□ -1.62
SDCBP-208	ENST00000520228	SAMD13	Q5VXD3	122 aa		4.91	□□□□□ -1.62
SDCBP-208	ENST00000520228	LINC00612	Q8N6U2	182 aa		4.91	□□□□□ -1.62
SDCBP-208	ENST00000520228	TYMSOS	Q8TAI1	123 aa		4.91	□□□□□ -1.62
SDCBP-208	ENST00000520228	GPR82	Q96P67	336 aa		4.91	□□□□□ -1.62
SDCBP-208	ENST00000520228	MGST2	Q99735	147 aa		4.91	□□□□□ -1.62
SDCBP-208	ENST00000520228	SHANK2-AS3	Q9BTD1	123 aa		4.91	□□□□□ -1.62
SDCBP-208	ENST00000520228	RSG1	Q9BU20	258 aa		4.91	□□□□□ -1.62
SDCBP-208	ENST00000520228	RNF126	Q9BV68	326 aa		4.91	□□□□□ -1.62
SDCBP-208	ENST00000520228	SCRT1	Q9BWW7	348 aa		4.91	□□□□□ -1.62
SDCBP-208	ENST00000520228	ARL6	Q9H0F7	186 aa		4.91	□□□□□ -1.62
SDCBP-208	ENST00000520228	MED28	Q9H204	178 aa		4.91	□□□□□ -1.62
SDCBP-208	ENST00000520228	RNF24	Q9Y225	148 aa		4.91	□□□□□ -1.62
SDCBP-208	ENST00000520228	TP53TG1	Q9Y2A0	90 aa		4.91	□□□□□ -1.62
SDCBP-208	ENST00000520228	UBE2L5P	A0A1B0GUS4	154 aa		4.9	□□□□□ -1.63
SDCBP-208	ENST00000520228		H3BRN7	92 aa		4.9	□□□□□ -1.63
SDCBP-208	ENST00000520228	ISLR	O14498	428 aa		4.9	□□□□□ -1.63
SDCBP-208	ENST00000520228	COX7A2P2	O60397	106 aa		4.9	□□□□□ -1.63
SDCBP-208	ENST00000520228	MPC2	O95563	127 aa		4.9	□□□□□ -1.63
SDCBP-208	ENST00000520228	CA1	P00915	261 aa	Predicted RBP	4.9	□□□□□ -1.63
SDCBP-208	ENST00000520228	RPL7	P18124	248 aa	Known RBP	4.9	□□□□□ -1.63
SDCBP-208	ENST00000520228	CXCL3	P19876	107 aa		4.9	□□□□□ -1.63
SDCBP-208	ENST00000520228	FGF7	P21781	194 aa		4.9	□□□□□ -1.63
SDCBP-208	ENST00000520228	PSMB3	P49720	205 aa		4.9	□□□□□ -1.63
SDCBP-208	ENST00000520228	MEOX2	P50222	304 aa		4.9	□□□□□ -1.63
SDCBP-208	ENST00000520228	BAX	Q07812	192 aa		4.9	□□□□□ -1.63
SDCBP-208	ENST00000520228	CLINT1	Q14677	625 aa		4.9	□□□□□ -1.63

Retrieved 100 of 20,778 RNA–protein pairs in 111.3 ms