RNA–Protein interactions for RNA: ENST00000513960.5

VCAN-210, Transcript of versican, humanhuman

TSL 1 (best)

Gene VCAN, Length 3,973 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-210ENST00000513960 TRGV9Q99603 122 aa7.62□□□□□ -1.19
VCAN-210ENST00000513960 SPTA1P02549 2419 aa7.62□□□□□ -1.19
VCAN-210ENST00000513960 IGHV3OR16-13A0A075B7E8 117 aa7.61□□□□□ -1.19
VCAN-210ENST00000513960 IGHV3-74A0A0B4J1X5 117 aa7.61□□□□□ -1.19
VCAN-210ENST00000513960 IGHV1-8P0DP01 117 aa7.61□□□□□ -1.19
VCAN-210ENST00000513960 GATA1P15976 413 aaPredicted RBP7.61□□□□□ -1.19
VCAN-210ENST00000513960 NBL1P41271 181 aa7.61□□□□□ -1.19
VCAN-210ENST00000513960 C8orf31Q8N9H6 132 aa7.61□□□□□ -1.19
VCAN-210ENST00000513960 THAP8Q8NA92 274 aa7.61□□□□□ -1.19
VCAN-210ENST00000513960 IGFBPL1Q8WX77 278 aa7.61□□□□□ -1.19
VCAN-210ENST00000513960 CITED1Q99966 193 aa7.61□□□□□ -1.19
VCAN-210ENST00000513960 MUC6Q6W4X9 2439 aa7.61□□□□□ -1.19
VCAN-210ENST00000513960 APOMO95445 188 aa7.61□□□□□ -1.19
VCAN-210ENST00000513960 MYCNOSP40205 109 aa7.61□□□□□ -1.19
VCAN-210ENST00000513960 TMEM155Q4W5P6 130 aa7.61□□□□□ -1.19
VCAN-210ENST00000513960 MYOZ3Q8TDC0 251 aa7.61□□□□□ -1.19
VCAN-210ENST00000513960 RPEQ96AT9 228 aa7.61□□□□□ -1.19
VCAN-210ENST00000513960 MSRB1Q9NZV6 116 aa7.61□□□□□ -1.19
VCAN-210ENST00000513960 KAAG1Q9UBP8 84 aa7.61□□□□□ -1.19
VCAN-210ENST00000513960 SPENQ96T58 3664 aaKnown RBP7.61□□□□□ -1.19
VCAN-210ENST00000513960 INS-IGF2F8WCM5 200 aa7.61□□□□□ -1.19
VCAN-210ENST00000513960 FCN3O75636 299 aa7.61□□□□□ -1.19
VCAN-210ENST00000513960 TMEM158Q8WZ71 300 aa7.61□□□□□ -1.19
VCAN-210ENST00000513960 NBASA2RRP1 2371 aa7.61□□□□□ -1.19
VCAN-210ENST00000513960 TRAV26-1A0A087WT03 109 aa7.61□□□□□ -1.19
VCAN-210ENST00000513960 SHISA9B4DS77 424 aa7.61□□□□□ -1.19
VCAN-210ENST00000513960 B9A039 149 aa7.61□□□□□ -1.19
VCAN-210ENST00000513960 SRSF9Q13242 221 aaKnown RBP eCLIP7.61□□□□□ -1.19
VCAN-210ENST00000513960 MALRD1Q5VYJ5 2156 aa7.6□□□□□ -1.19
VCAN-210ENST00000513960 AKAP13Q12802 2813 aa7.6□□□□□ -1.19
VCAN-210ENST00000513960 TMEM8BA6NDV4 472 aa7.6□□□□□ -1.19
VCAN-210ENST00000513960 SMIM17P0DL12 118 aa7.6□□□□□ -1.19
VCAN-210ENST00000513960 PSMB2P49721 201 aa7.6□□□□□ -1.19
VCAN-210ENST00000513960 MRPL16Q9NX20 251 aaKnown RBP7.6□□□□□ -1.19
VCAN-210ENST00000513960 CYSLTR1Q9Y271 337 aa7.6□□□□□ -1.19
VCAN-210ENST00000513960 TRBV25-1A0A075B6N4 114 aa7.6□□□□□ -1.19
VCAN-210ENST00000513960 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP7.6□□□□□ -1.19
VCAN-210ENST00000513960 NCBP2LA6PVI3 153 aaKnown RBP7.6□□□□□ -1.19
VCAN-210ENST00000513960 DPM2O94777 84 aa7.6□□□□□ -1.19
VCAN-210ENST00000513960 A0A1B0GW15 77 aa7.6□□□□□ -1.19
VCAN-210ENST00000513960 ZNF785A8K8V0 405 aa7.6□□□□□ -1.19
VCAN-210ENST00000513960 GEMIN7Q9H840 131 aaKnown RBP7.6□□□□□ -1.19
VCAN-210ENST00000513960 LAMA5O15230 3695 aa7.59□□□□□ -1.19
VCAN-210ENST00000513960 IGHV3-66A0A0C4DH42 116 aa7.59□□□□□ -1.19
VCAN-210ENST00000513960 TNFRSF13BO14836 293 aaPredicted RBP7.59□□□□□ -1.19
VCAN-210ENST00000513960 IGLV2-23P01705 113 aa7.59□□□□□ -1.19
VCAN-210ENST00000513960 SCGB1C2P0DMR2 95 aa7.59□□□□□ -1.19
VCAN-210ENST00000513960 INSL3P51460 131 aa7.59□□□□□ -1.19
VCAN-210ENST00000513960 Q6AWC8 147 aa7.59□□□□□ -1.19
VCAN-210ENST00000513960 VKORC1Q9BQB6 163 aa7.59□□□□□ -1.19
VCAN-210ENST00000513960 ABCA4P78363 2273 aa7.59□□□□□ -1.19
VCAN-210ENST00000513960 A0A096LNJ9 63 aa7.59□□□□□ -1.19
VCAN-210ENST00000513960 ZNF502Q8TBZ5 544 aa7.59□□□□□ -1.19
VCAN-210ENST00000513960 RNF125Q96EQ8 232 aa7.59□□□□□ -1.19
VCAN-210ENST00000513960 SPAG8Q99932 426 aaPredicted RBP7.59□□□□□ -1.19
VCAN-210ENST00000513960 TRBV19A0A075B6N1 114 aa7.59□□□□□ -1.2
VCAN-210ENST00000513960 LYNX1G3V0Z9 82 aa7.59□□□□□ -1.2
VCAN-210ENST00000513960 LYNX1P0DP58 116 aa7.59□□□□□ -1.2
VCAN-210ENST00000513960 DLX6P56179 175 aa7.59□□□□□ -1.2
VCAN-210ENST00000513960 FAM90A27PA6NNH2 459 aa7.58□□□□□ -1.2
VCAN-210ENST00000513960 CCDC144NLQ6NUI1 221 aa7.58□□□□□ -1.2
VCAN-210ENST00000513960 SYT8Q8NBV8 401 aa7.58□□□□□ -1.2
VCAN-210ENST00000513960 LINC01560Q8TB33 94 aa7.58□□□□□ -1.2
VCAN-210ENST00000513960 MRPL35Q9NZE8 188 aaKnown RBP7.58□□□□□ -1.2
VCAN-210ENST00000513960 IGHV3-49A0A0A0MS15 119 aa7.58□□□□□ -1.2
VCAN-210ENST00000513960 IGLL5B9A064 214 aa7.58□□□□□ -1.2
VCAN-210ENST00000513960 PPP1R27Q86WC6 154 aa7.58□□□□□ -1.2
VCAN-210ENST00000513960 CEND1Q8N111 149 aa7.58□□□□□ -1.2
VCAN-210ENST00000513960 SRSF8Q9BRL6 282 aaKnown RBP7.58□□□□□ -1.2
VCAN-210ENST00000513960 TRAV26-2A0A0B4J265 109 aa7.58□□□□□ -1.2
VCAN-210ENST00000513960 OR11H12B2RN74 326 aa7.58□□□□□ -1.2
VCAN-210ENST00000513960 H7C2G1 150 aa7.58□□□□□ -1.2
VCAN-210ENST00000513960 GAS8-AS1O95177 125 aa7.58□□□□□ -1.2
VCAN-210ENST00000513960 SPINK8P0C7L1 97 aa7.58□□□□□ -1.2
VCAN-210ENST00000513960 HLA-DMBP28068 263 aa7.58□□□□□ -1.2
VCAN-210ENST00000513960 CRIP1P50238 77 aa7.58□□□□□ -1.2
VCAN-210ENST00000513960 OR11H1Q8NG94 326 aa7.58□□□□□ -1.2
VCAN-210ENST00000513960 OR11H2Q8NH07 326 aa7.58□□□□□ -1.2
VCAN-210ENST00000513960 C20orf78Q9BR46 151 aa7.58□□□□□ -1.2
VCAN-210ENST00000513960 K7ENP7 123 aa7.57□□□□□ -1.2
VCAN-210ENST00000513960 SIVA1O15304 175 aa7.57□□□□□ -1.2
VCAN-210ENST00000513960 ONECUT1Q9UBC0 465 aa7.57□□□□□ -1.2
VCAN-210ENST00000513960 TNFRSF6BO95407 300 aa7.57□□□□□ -1.2
VCAN-210ENST00000513960 EFNA4P52798 201 aa7.57□□□□□ -1.2
VCAN-210ENST00000513960 PIP4P2Q8N4L2 257 aa7.57□□□□□ -1.2
VCAN-210ENST00000513960 PGPEP1Q9NXJ5 209 aa7.57□□□□□ -1.2
VCAN-210ENST00000513960 IGLV2-11P01706 119 aa7.57□□□□□ -1.2
VCAN-210ENST00000513960 EGR2P11161 476 aaPredicted RBP7.57□□□□□ -1.2
VCAN-210ENST00000513960 CRYBA4P53673 196 aa7.57□□□□□ -1.2
VCAN-210ENST00000513960 C12orf74Q32Q52 190 aa7.57□□□□□ -1.2
VCAN-210ENST00000513960 C16orf54Q6UWD8 224 aa7.57□□□□□ -1.2
VCAN-210ENST00000513960 TLN1Q9Y490 2541 aaKnown RBP7.57□□□□□ -1.2
VCAN-210ENST00000513960 FSTL3O95633 263 aa7.56□□□□□ -1.2
VCAN-210ENST00000513960 SPANXN1Q5VSR9 72 aa7.56□□□□□ -1.2
VCAN-210ENST00000513960 IGHV1-3A0A0C4DH29 117 aa7.56□□□□□ -1.2
VCAN-210ENST00000513960 F8W1H4 67 aa7.56□□□□□ -1.2
VCAN-210ENST00000513960 SPANXB1Q9NS25 103 aaPredicted RBP7.56□□□□□ -1.2
VCAN-210ENST00000513960 SIGLEC9Q9Y336 463 aa7.56□□□□□ -1.2
VCAN-210ENST00000513960 BUB1B-PAK6H3BSN5 160 aa7.56□□□□□ -1.2
VCAN-210ENST00000513960 ERCC8Q13216 396 aa7.56□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 385.6 ms