RNA–Protein interactions for RNA: ENST00000513643.5

RNF4-221, Transcript of ring finger protein 4, humanhuman

TSL 3

Gene RNF4, Length 516 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-221ENST00000513643 DEFB131BA0A096LNP1 70 aa6.88□□□□□ -1.31
RNF4-221ENST00000513643 RBAKDNA6NC62 111 aa6.88□□□□□ -1.31
RNF4-221ENST00000513643 LYRM9A8MSI8 78 aa6.88□□□□□ -1.31
RNF4-221ENST00000513643 SLC25A5P05141 298 aaKnown RBP6.88□□□□□ -1.31
RNF4-221ENST00000513643 STAG3L2P0CL84 134 aa6.88□□□□□ -1.31
RNF4-221ENST00000513643 STAG3L3P0CL85 134 aa6.88□□□□□ -1.31
RNF4-221ENST00000513643 LEPP41159 167 aa6.88□□□□□ -1.31
RNF4-221ENST00000513643 TAS2R45P59539 299 aa6.88□□□□□ -1.31
RNF4-221ENST00000513643 KHDC3LQ587J8 217 aa6.88□□□□□ -1.31
RNF4-221ENST00000513643 PQLC2Q6ZP29 291 aa6.88□□□□□ -1.31
RNF4-221ENST00000513643 ZNF493Q6ZR52 646 aa6.88□□□□□ -1.31
RNF4-221ENST00000513643 OR10G4Q8NGN3 311 aa6.88□□□□□ -1.31
RNF4-221ENST00000513643 OR10G9Q8NGN4 311 aa6.88□□□□□ -1.31
RNF4-221ENST00000513643 OR10G7Q8NGN6 311 aa6.88□□□□□ -1.31
RNF4-221ENST00000513643 FAM210BQ96KR6 192 aa6.88□□□□□ -1.31
RNF4-221ENST00000513643 LINC01587Q99440 93 aa6.88□□□□□ -1.31
RNF4-221ENST00000513643 VGLL1Q99990 258 aa6.88□□□□□ -1.31
RNF4-221ENST00000513643 NIPSNAP3BQ9BS92 247 aa6.88□□□□□ -1.31
RNF4-221ENST00000513643 AAMDCQ9H7C9 122 aa6.88□□□□□ -1.31
RNF4-221ENST00000513643 ZNF492Q9P255 531 aa6.88□□□□□ -1.31
RNF4-221ENST00000513643 IGHV4-4A0A075B6R2 117 aa6.87□□□□□ -1.31
RNF4-221ENST00000513643 OR7C2O60412 319 aa6.87□□□□□ -1.31
RNF4-221ENST00000513643 EIF3GO75821 320 aaKnown RBP eCLIP6.87□□□□□ -1.31
RNF4-221ENST00000513643 EMP1P54849 157 aa6.87□□□□□ -1.31
RNF4-221ENST00000513643 RANP62826 216 aaKnown RBP6.87□□□□□ -1.31
RNF4-221ENST00000513643 UBE2L3P68036 154 aaKnown RBP6.87□□□□□ -1.31
RNF4-221ENST00000513643 RPL7L1Q6DKI1 246 aaKnown RBP6.87□□□□□ -1.31
RNF4-221ENST00000513643 HSD17B11Q8NBQ5 300 aa6.87□□□□□ -1.31
RNF4-221ENST00000513643 INO80EQ8NBZ0 244 aaPredicted RBP6.87□□□□□ -1.31
RNF4-221ENST00000513643 TMED6Q8WW62 240 aa6.87□□□□□ -1.31
RNF4-221ENST00000513643 RAB24Q969Q5 203 aa6.87□□□□□ -1.31
RNF4-221ENST00000513643 TMEM208Q9BTX3 173 aa6.87□□□□□ -1.31
RNF4-221ENST00000513643 SH3BGRL3Q9H299 93 aa6.87□□□□□ -1.31
RNF4-221ENST00000513643 Q9H3A6 140 aa6.87□□□□□ -1.31
RNF4-221ENST00000513643 IGKV2-40A0A087WW87 121 aaPredicted RBP6.86□□□□□ -1.31
RNF4-221ENST00000513643 FXYD6-FXYD2A0A087WZ82 144 aa6.86□□□□□ -1.31
RNF4-221ENST00000513643 IGLL5B9A064 214 aa6.86□□□□□ -1.31
RNF4-221ENST00000513643 DIRC3C9JPN6 131 aa6.86□□□□□ -1.31
RNF4-221ENST00000513643 IGKV2D-40P01614 121 aaPredicted RBP6.86□□□□□ -1.31
RNF4-221ENST00000513643 MBP02144 154 aa6.86□□□□□ -1.31
RNF4-221ENST00000513643 CD300CQ08708 224 aa6.86□□□□□ -1.31
RNF4-221ENST00000513643 PRR9Q5T870 116 aa6.86□□□□□ -1.31
RNF4-221ENST00000513643 FAM122CQ6P4D5 195 aa6.86□□□□□ -1.31
RNF4-221ENST00000513643 C11orf72Q8NBR9 251 aa6.86□□□□□ -1.31
RNF4-221ENST00000513643 OR11H4Q8NGC9 324 aa6.86□□□□□ -1.31
RNF4-221ENST00000513643 RXFP4Q8TDU9 374 aa6.86□□□□□ -1.31
RNF4-221ENST00000513643 TMEM263Q8WUH6 116 aaKnown RBP6.86□□□□□ -1.31
RNF4-221ENST00000513643 GNPNAT1Q96EK6 184 aaPredicted RBP6.86□□□□□ -1.31
RNF4-221ENST00000513643 C16orf74Q96GX8 76 aa6.86□□□□□ -1.31
RNF4-221ENST00000513643 PYGO2Q9BRQ0 406 aa6.86□□□□□ -1.31
RNF4-221ENST00000513643 OTORQ9NRC9 128 aa6.86□□□□□ -1.31
RNF4-221ENST00000513643 LENEPQ9Y5L5 61 aa6.86□□□□□ -1.31
RNF4-221ENST00000513643 HECTD4Q9Y4D8 3996 aa6.85□□□□□ -1.31
RNF4-221ENST00000513643 A0A1W2PPV4 95 aa6.85□□□□□ -1.31
RNF4-221ENST00000513643 C7orf71A4D174 169 aa6.85□□□□□ -1.31
RNF4-221ENST00000513643 HMSDA8MTL9 139 aa6.85□□□□□ -1.31
RNF4-221ENST00000513643 TAAR5O14804 337 aa6.85□□□□□ -1.31
RNF4-221ENST00000513643 LY6G6CO95867 125 aa6.85□□□□□ -1.31
RNF4-221ENST00000513643 CDC34P49427 236 aaPredicted RBP6.85□□□□□ -1.31
RNF4-221ENST00000513643 ZNF138P52744 262 aa6.85□□□□□ -1.31
RNF4-221ENST00000513643 DAZ2Q13117 558 aaKnown RBP6.85□□□□□ -1.31
RNF4-221ENST00000513643 ZNF345Q14585 488 aa6.85□□□□□ -1.31
RNF4-221ENST00000513643 ZNF726P1Q15940 193 aa6.85□□□□□ -1.31
RNF4-221ENST00000513643 ANXA2RQ3ZCQ2 193 aa6.85□□□□□ -1.31
RNF4-221ENST00000513643 SSX7Q7RTT5 188 aa6.85□□□□□ -1.31
RNF4-221ENST00000513643 TIMM8BQ9Y5J9 83 aaPredicted RBP6.85□□□□□ -1.31
RNF4-221ENST00000513643 TRAV12-3A0A0B4J271 114 aa6.84□□□□□ -1.31
RNF4-221ENST00000513643 PGPA6NDG6 321 aa6.84□□□□□ -1.31
RNF4-221ENST00000513643 CBY3A6NI87 242 aa6.84□□□□□ -1.31
RNF4-221ENST00000513643 SMLR1H3BR10 107 aa6.84□□□□□ -1.31
RNF4-221ENST00000513643 ARL14EPLP0DKL9 152 aa6.84□□□□□ -1.31
RNF4-221ENST00000513643 GCHFRP30047 84 aa6.84□□□□□ -1.31
RNF4-221ENST00000513643 DAD1P61803 113 aa6.84□□□□□ -1.31
RNF4-221ENST00000513643 BTN1A1Q13410 526 aa6.84□□□□□ -1.31
RNF4-221ENST00000513643 TMEM78Q5T7P6 136 aa6.84□□□□□ -1.31
RNF4-221ENST00000513643 Q6AWC8 147 aa6.84□□□□□ -1.31
RNF4-221ENST00000513643 Q6ZQT7 251 aa6.84□□□□□ -1.31
RNF4-221ENST00000513643 KCNRGQ8N5I3 272 aa6.84□□□□□ -1.31
RNF4-221ENST00000513643 TVP23CQ96ET8 276 aa6.84□□□□□ -1.31
RNF4-221ENST00000513643 ST6GAL2Q96JF0 529 aa6.84□□□□□ -1.31
RNF4-221ENST00000513643 C18orf15Q96N68 181 aa6.84□□□□□ -1.31
RNF4-221ENST00000513643 TP53TG3Q9ULZ0 132 aa6.84□□□□□ -1.31
RNF4-221ENST00000513643 BORCS7-ASMTA0A0B4J1R7 106 aa6.83□□□□□ -1.32
RNF4-221ENST00000513643 HMGB3O15347 200 aaKnown RBP6.83□□□□□ -1.32
RNF4-221ENST00000513643 ARPC5O15511 151 aa6.83□□□□□ -1.32
RNF4-221ENST00000513643 CSN1S1P47710 185 aa6.83□□□□□ -1.32
RNF4-221ENST00000513643 NDUFAF3Q9BU61 184 aa6.83□□□□□ -1.32
RNF4-221ENST00000513643 ACTR3CQ9C0K3 210 aaPredicted RBP6.83□□□□□ -1.32
RNF4-221ENST00000513643 NOP10Q9NPE3 64 aaKnown RBP6.83□□□□□ -1.32
RNF4-221ENST00000513643 DNAH11Q96DT5 4516 aa6.82□□□□□ -1.32
RNF4-221ENST00000513643 DYNC1H1Q14204 4646 aaKnown RBP6.82□□□□□ -1.32
RNF4-221ENST00000513643 J3KRW8 73 aa6.82□□□□□ -1.32
RNF4-221ENST00000513643 CXorf1O96002 111 aa6.82□□□□□ -1.32
RNF4-221ENST00000513643 IGLV2-11P01706 119 aa6.82□□□□□ -1.32
RNF4-221ENST00000513643 GPX1P07203 203 aa6.82□□□□□ -1.32
RNF4-221ENST00000513643 HTN1P15515 57 aa6.82□□□□□ -1.32
RNF4-221ENST00000513643 RNASE4P34096 147 aaKnown RBP6.82□□□□□ -1.32
RNF4-221ENST00000513643 TDRG1Q3Y452 100 aa6.82□□□□□ -1.32
RNF4-221ENST00000513643 IBA57Q5T440 356 aaKnown RBP6.82□□□□□ -1.32
RNF4-221ENST00000513643 Q6ZNX1 250 aa6.82□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 77.7 ms