RNA–Protein interactions for RNA: ENST00000512228.5

LIMCH1-214, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 4

Gene LIMCH1, Length 473 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-214ENST00000512228 BTN1A1Q13410 526 aa7.72□□□□□ -1.17
LIMCH1-214ENST00000512228 RAB31Q13636 194 aa7.72□□□□□ -1.17
LIMCH1-214ENST00000512228 S100A7AQ86SG5 101 aa7.72□□□□□ -1.17
LIMCH1-214ENST00000512228 OR1L4Q8NGR5 311 aa7.72□□□□□ -1.17
LIMCH1-214ENST00000512228 C20orf144Q9BQM9 153 aa7.72□□□□□ -1.17
LIMCH1-214ENST00000512228 NPCDR1Q9BY65 106 aa7.72□□□□□ -1.17
LIMCH1-214ENST00000512228 IGKV2-40A0A087WW87 121 aaPredicted RBP7.71□□□□□ -1.18
LIMCH1-214ENST00000512228 PRAF2O60831 178 aa7.71□□□□□ -1.18
LIMCH1-214ENST00000512228 PTTG1O95997 202 aa7.71□□□□□ -1.18
LIMCH1-214ENST00000512228 IGKV2D-40P01614 121 aaPredicted RBP7.71□□□□□ -1.18
LIMCH1-214ENST00000512228 HIST1H1EP10412 219 aaKnown RBP7.71□□□□□ -1.18
LIMCH1-214ENST00000512228 LEPP41159 167 aa7.71□□□□□ -1.18
LIMCH1-214ENST00000512228 CCL18P55774 89 aa7.71□□□□□ -1.18
LIMCH1-214ENST00000512228 DAZ2Q13117 558 aaKnown RBP7.71□□□□□ -1.18
LIMCH1-214ENST00000512228 GUK1Q16774 197 aa7.71□□□□□ -1.18
LIMCH1-214ENST00000512228 C6orf223Q8N319 242 aa7.71□□□□□ -1.18
LIMCH1-214ENST00000512228 ZFAND2AQ8N6M9 145 aa7.71□□□□□ -1.18
LIMCH1-214ENST00000512228 RXFP4Q8TDU9 374 aa7.71□□□□□ -1.18
LIMCH1-214ENST00000512228 GNPNAT1Q96EK6 184 aaPredicted RBP7.71□□□□□ -1.18
LIMCH1-214ENST00000512228 ZNF503Q96F45 646 aa7.71□□□□□ -1.18
LIMCH1-214ENST00000512228 ODF3Q96PU9 254 aa7.71□□□□□ -1.18
LIMCH1-214ENST00000512228 GPN1Q9HCN4 374 aaPredicted RBP7.71□□□□□ -1.18
LIMCH1-214ENST00000512228 RNF24Q9Y225 148 aa7.71□□□□□ -1.18
LIMCH1-214ENST00000512228 ABCA13Q86UQ4 5058 aa7.7□□□□□ -1.18
LIMCH1-214ENST00000512228 C7orf71A4D174 169 aa7.7□□□□□ -1.18
LIMCH1-214ENST00000512228 ZNF253O75346 499 aa7.7□□□□□ -1.18
LIMCH1-214ENST00000512228 RLN2P04090 185 aa7.7□□□□□ -1.18
LIMCH1-214ENST00000512228 PVALBP20472 110 aaPredicted RBP7.7□□□□□ -1.18
LIMCH1-214ENST00000512228 M6PRP20645 277 aa7.7□□□□□ -1.18
LIMCH1-214ENST00000512228 H2BFSP57053 126 aa7.7□□□□□ -1.18
LIMCH1-214ENST00000512228 ICAM4Q14773 271 aa7.7□□□□□ -1.18
LIMCH1-214ENST00000512228 ATP6V1FQ16864 119 aa7.7□□□□□ -1.18
LIMCH1-214ENST00000512228 LRRC37A5PQ49AS3 106 aa7.7□□□□□ -1.18
LIMCH1-214ENST00000512228 FAM122CQ6P4D5 195 aa7.7□□□□□ -1.18
LIMCH1-214ENST00000512228 C9orf47Q6ZRZ4 202 aa7.7□□□□□ -1.18
LIMCH1-214ENST00000512228 CCDC28AQ8IWP9 274 aa7.7□□□□□ -1.18
LIMCH1-214ENST00000512228 OR5C1Q8NGR4 320 aa7.7□□□□□ -1.18
LIMCH1-214ENST00000512228 FXYD5Q96DB9 178 aa7.7□□□□□ -1.18
LIMCH1-214ENST00000512228 PFDN5Q99471 154 aa7.7□□□□□ -1.18
LIMCH1-214ENST00000512228 PYGO2Q9BRQ0 406 aa7.7□□□□□ -1.18
LIMCH1-214ENST00000512228 HSPG2P98160 4391 aa7.7□□□□□ -1.18
LIMCH1-214ENST00000512228 A0A096LPF7 62 aa7.69□□□□□ -1.18
LIMCH1-214ENST00000512228 SLC25A5P05141 298 aaKnown RBP7.69□□□□□ -1.18
LIMCH1-214ENST00000512228 OR10J4P0C629 311 aa7.69□□□□□ -1.18
LIMCH1-214ENST00000512228 FUSP35637 526 aaKnown RBP eCLIP7.69□□□□□ -1.18
LIMCH1-214ENST00000512228 KRTAP10-2P60368 255 aa7.69□□□□□ -1.18
LIMCH1-214ENST00000512228 CLINT1Q14677 625 aa7.69□□□□□ -1.18
LIMCH1-214ENST00000512228 SOHLH1Q5JUK2 328 aa7.69□□□□□ -1.18
LIMCH1-214ENST00000512228 MRPL53Q96EL3 112 aaKnown RBP7.69□□□□□ -1.18
LIMCH1-214ENST00000512228 LINC00477Q96M19 166 aa7.69□□□□□ -1.18
LIMCH1-214ENST00000512228 MARVELD1Q9BSK0 173 aa7.69□□□□□ -1.18
LIMCH1-214ENST00000512228 TIMM9Q9Y5J7 89 aa7.69□□□□□ -1.18
LIMCH1-214ENST00000512228 TNFRSF18Q9Y5U5 241 aa7.69□□□□□ -1.18
LIMCH1-214ENST00000512228 SNURFLB1AK76 121 aa7.68□□□□□ -1.18
LIMCH1-214ENST00000512228 INMT-MINDY4F8WBC2 141 aa7.68□□□□□ -1.18
LIMCH1-214ENST00000512228 SPINK4O60575 86 aa7.68□□□□□ -1.18
LIMCH1-214ENST00000512228 NBEAP1P0C6P0 100 aa7.68□□□□□ -1.18
LIMCH1-214ENST00000512228 CRISP2P16562 243 aa7.68□□□□□ -1.18
LIMCH1-214ENST00000512228 HBG1P69891 147 aa7.68□□□□□ -1.18
LIMCH1-214ENST00000512228 HBG2P69892 147 aa7.68□□□□□ -1.18
LIMCH1-214ENST00000512228 STX12Q86Y82 276 aa7.68□□□□□ -1.18
LIMCH1-214ENST00000512228 Q8TAT8 98 aa7.68□□□□□ -1.18
LIMCH1-214ENST00000512228 PHYHIPLQ96FC7 376 aa7.68□□□□□ -1.18
LIMCH1-214ENST00000512228 LINC00467Q9BRT7 94 aa7.68□□□□□ -1.18
LIMCH1-214ENST00000512228 WDR61Q9GZS3 305 aaKnown RBP7.68□□□□□ -1.18
LIMCH1-214ENST00000512228 OR51M1Q9H341 326 aa7.68□□□□□ -1.18
LIMCH1-214ENST00000512228 ZNF492Q9P255 531 aa7.68□□□□□ -1.18
LIMCH1-214ENST00000512228 LRP1BQ9NZR2 4599 aa7.68□□□□□ -1.18
LIMCH1-214ENST00000512228 TRGV1A0A0A0MS02 117 aa7.67□□□□□ -1.18
LIMCH1-214ENST00000512228 C16orf90A8MZG2 172 aa7.67□□□□□ -1.18
LIMCH1-214ENST00000512228 IGHV3-53P01767 116 aa7.67□□□□□ -1.18
LIMCH1-214ENST00000512228 GPX1P07203 203 aa7.67□□□□□ -1.18
LIMCH1-214ENST00000512228 RGS21Q2M5E4 152 aa7.67□□□□□ -1.18
LIMCH1-214ENST00000512228 ANXA2RQ3ZCQ2 193 aa7.67□□□□□ -1.18
LIMCH1-214ENST00000512228 UPK3BQ9BT76 320 aa7.67□□□□□ -1.18
LIMCH1-214ENST00000512228 NMES1Q9C002 83 aa7.67□□□□□ -1.18
LIMCH1-214ENST00000512228 WFDC1Q9HC57 220 aa7.67□□□□□ -1.18
LIMCH1-214ENST00000512228 MRPL16Q9NX20 251 aaKnown RBP7.67□□□□□ -1.18
LIMCH1-214ENST00000512228 MDFICQ9P1T7 246 aa7.67□□□□□ -1.18
LIMCH1-214ENST00000512228 FUT9Q9Y231 359 aa7.67□□□□□ -1.18
LIMCH1-214ENST00000512228 E5RGE8 158 aa7.66□□□□□ -1.18
LIMCH1-214ENST00000512228 H3BNG1 76 aa7.66□□□□□ -1.18
LIMCH1-214ENST00000512228 MPDU1O75352 247 aa7.66□□□□□ -1.18
LIMCH1-214ENST00000512228 RANP62826 216 aaKnown RBP7.66□□□□□ -1.18
LIMCH1-214ENST00000512228 PDE6HQ13956 83 aa7.66□□□□□ -1.18
LIMCH1-214ENST00000512228 FHL2Q14192 279 aa7.66□□□□□ -1.18
LIMCH1-214ENST00000512228 SPATA12Q7Z6I5 190 aa7.66□□□□□ -1.18
LIMCH1-214ENST00000512228 EIF4E3Q8N5X7 224 aaKnown RBP7.66□□□□□ -1.18
LIMCH1-214ENST00000512228 C18orf15Q96N68 181 aa7.66□□□□□ -1.18
LIMCH1-214ENST00000512228 PAXXQ9BUH6 204 aa7.66□□□□□ -1.18
LIMCH1-214ENST00000512228 Q9H3A6 140 aa7.66□□□□□ -1.18
LIMCH1-214ENST00000512228 PRELID1Q9Y255 219 aa7.66□□□□□ -1.18
LIMCH1-214ENST00000512228 MRPS16Q9Y3D3 137 aaKnown RBP7.66□□□□□ -1.18
LIMCH1-214ENST00000512228 TRGV2A0A075B6R0 118 aa7.65□□□□□ -1.18
LIMCH1-214ENST00000512228 TCL1AP56279 114 aa7.65□□□□□ -1.18
LIMCH1-214ENST00000512228 MUC21Q5SSG8 566 aa7.65□□□□□ -1.18
LIMCH1-214ENST00000512228 Q6ZRN7 208 aaPredicted RBP7.65□□□□□ -1.18
LIMCH1-214ENST00000512228 PPP1R1CQ8WVI7 109 aa7.65□□□□□ -1.18
LIMCH1-214ENST00000512228 SMIM3Q9BZL3 60 aa7.65□□□□□ -1.18
LIMCH1-214ENST00000512228 SLC25A31Q9H0C2 315 aa7.65□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 56.2 ms